Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra85923 |
| ProteomeId | EsuBft1352_4 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 4776|Peronosporales |
| Length | 608 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.24e-27 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=608bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCG
ATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCC
TCTGAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGA
ACGCGCTTAAGCGGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGC
ATCACCTACGTACGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
GCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCC
GAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCT
CGCCTTAATAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCG
ACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACT
GCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGT
CCTTGGCAGAAAGAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTAC
CGGTGTAG back to topprotein sequence of EsuBft1352_4a-0001 >EsuBft1352_4 ID=EsuBft1352_4|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MWTKLTRPDIALPLNKLQKIAHSPTGRIWNALKRIMPYLNFTKDFGITYV
RGSGLDLSVFVNASYADNEVDRRSTTGLAGVKEALFVRGVLSFIAPETSG
AKIKVLEDNNGALALIIENPFSSARSKHIDVRFHFIRELFKSGKITAEYV
PTGEQHADMLTKVLGRKKLDYHRKALMNLPV back to topmRNA from alignment at Scaffold_70:177092..177795+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=704bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)
GGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCG
ATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCC
TCTGAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGA
ACGCGCTTAAGCGGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGC
ATCACCTACGTACGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
TGACCGTAGGTGGTACCGTAGTGTGTGCTTCCACCAAGACGCAGCCAGTG
ACGGCTCAGTCGACCTTGGAAGCAGAGTTTATGGCAGCCGGGGAGGGCGT
GAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGA
CGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCTCGCC
TTAATAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGT
GCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAG
AGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTT
GGCAGAAAGAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTACCGGT
GTAG back to topCoding sequence (CDS) from alignment at Scaffold_70:177092..177795+ >EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)
ATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGCT
CCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTAAGC
GGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGCATCACCTACGTA
CGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGCCAGCTACGCTGA
CAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGG
CGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGAGTGGG
GCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCTCGCCTTAATAAT
CGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGGTTCC
ATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATGTT
CCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAAA
GAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTACCGGTGTAG back to top
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