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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 164328.Phyra86833 |
| ProteomeId | EsuBft1352_3 |
| Protein domains | Coil |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Protein domains | IPR001878 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 2704 |
| Evalue | 9.31e-29 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHRV@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0005515 |
| EC | 3.1 |
| GO | 0003824 |
| GO | 0004518 |
| GO | 0090304 |
| GO | 0016740 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1352_3a-0001 ID=EsuBft1352_3a-0001|Name=EsuBft1352_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2704bp|location=Sequence derived from alignment at Scaffold_70:174373..177076+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAAT ACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAG GGCGCAGAGCAAGCGTACTTTGCCGACGGTGAGGGCCGCAAGGAGCGGTA CTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCC GCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGTCGGC GGCGGTCGCGGCGGCCGCTCAGGCAGATCCGGAGGAGTCGAGGAGAGCCA GGGAAGCAGCAGTGGAGGCGCCGATGGCGGCTGTGGCGGGGACTATAAGT TCCCGGGCCGGTGCTTTAGGGGTGGACATCGTGGACATCAAGCGATCGGC TGCACTACCAATGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGG GTGGGGCCACATCAAAGAAAATTGCGCGACGGAGGAGGCCGTCCTAGCGC AAGTGATGGAGCATGAGAGCGACGTGGACTCTGTGGAAGACCAGGCGTTT TGTGCCGTGGCTGTCCCCACAGCCACCCCAACTGACCTCAACGAGTACCA CCTTGCGCACGACCATGCCCACGAGACATTGCTCAGGATCACGGCGGAGC AGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTCTTGGCTGT TCGATGTCCAAAGGACAGCTGCTACCTCTCGCAGATGACGAGGAGGGCGG GGAGGGAAAGAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGANG GTGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAATGAGAAGGAC TTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACANNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTG AGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCG TTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGAAATTCCGGGGGA CGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGGCCCTTCGGGAAGGAGCGA CTTCGGCGGAGGCAGTGACAGCTCCACCGACAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCATCAGCAGCCCGAGCAGCAACAGCAGTGACGCC GGTGGTGCCGGCGGCCCCGGCGGCGAAGAGTCCGGCGACCCAGGTGGGGA CGGCGGTAGCGATGGTGANAAATTCCGGGGGACGGAGGCAGCGTTCCCCC GTCGCCCCCTTCGGCCCTTCGGGAAGGAGCGACTTCGGCGGAGGCAGTGA CAGCTCCACCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA TCAGCAGCCCGAGCAGCAACAGCAGTGACGCCGGTGGTGCCGGCGGCCCC GGCGGCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGA TCCCGGCGACTCCGAGAACCTTGAGGAGTTGAAGTATGATCCAGCCGACG ACCGCTACCCCCGCAGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCG AACGCTGGCCCGCTGCGCCATGGGCTCGAGAGTGGCCGCACGCGGAAGCA GACCCGGGAGAAGAAAGGTGCCGGGGAGATGCCGGGACCCGGAGAAACAC CGGACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAACTGGCGGGACG GGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGA CGAGGAGCAGACACGCCGTATGGAGGAAATGTACAGGCGCGAGATGCAGG AGGTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGC GGGTCTTCGCAACCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAAT CGGGCAGAAGCCGAGTGATGTGAAAGCAGTGCCGATGACGTACAAGGATG TGATGTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAG ATAGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCC CGAGGGGCGGAAGGCCATAGGTTCAAAGTGGGTGTTCTCTTGGAAGACGA ATGAGAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGT TTCTCTCAAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGCCC GTCTGCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCA AGAAACTCGGTCACTGGGATGTGAAGCAAGCGTACATCCACGCTAAGCTA AAAGAAGAAATATACCTCAGGTTCCCAGAGGGCTGTGATAGCATGTCCGG CAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCC CTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATAGATACGAG CAGTGCAGGGTTGACCCGTGTGTCTTCAGGAAGGTGCTGGATGGAGAGGT CGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNN back to topprotein sequence of EsuBft1352_3a-0001 >EsuBft1352_3 ID=EsuBft1352_3|Name=EsuBft1352_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=851bp
MIEYKAIKDKLEQGKGKGAKGAEQAYFADGEGRKERYSSRSQGQGRGRGG GRGRSSSRGRGGGGRGGGVGGGRGGRSGRSGGVEESQGSSSGGADGGCGG DYKFPGRCFRGGHRGHQAIGCTTNEKDFVPWCARCEGWGHIKENCATEEA VLAQVMEHESDVDSVEDQAFCAVAVPTATPTDLNEYHLAHDHAHETLLRI TAEQQGVQLTDGPLLPCLGCSMSKGQLLPLADDEEGGEGKSRADASRQGW GGXGGHRGHQAIGCTTNEKDFVPWCARCEGWGHXXXXXXXXXXXXXXXXX XXSESDLDVMEARGPGQATPFVREEAPTAPGNEIPGDGGSVPPSPPSALR EGATSAEAVTAPPTAAAAAAAAAAAASAARAATAVTPVVPAAPAAKSPAT QVGTAVAMVXNSGGRRQRSPVAPFGPSGRSDFGGGSDSSTDSSSSSSSSS SSSISSPSSNSSDAGGAGGPGGEESGDPGGDGGSDGDPGDSENLEELKYD PADDRYPRRLEGKKLLWGASNAGPLRHGLESGRTRKQTREKKGAGEMPGP GETPDPEEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRR EMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVKAVPMT YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFS WKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVAT EKGKKLGHWDVKQAYIHAKLKEEIYLRFPEGCDSMSGKVVKVERALYGLK QSGPEWGFEAADALIENRYEQCRVDPCVFRKVLDGEVVGLIVIYVDDILV X back to topmRNA from alignment at Scaffold_70:174373..177076+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1352_3a-0001 ID=EsuBft1352_3a-0001|Name=EsuBft1352_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2704bp|location=Sequence derived from alignment at Scaffold_70:174373..177076+ (Ectocarpus subulatus male Bft15b) CGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAAT
ACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAG
GGCGCAGAGCAAGCGTACTTTGCCGACGGTGAGGGCCGCAAGGAGCGGTA
CTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCC
GCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGTCGGC
GGCGGTCGCGGCGGCCGCTCAGGCAGATCCGGAGGAGTCGAGGAGAGCCA
GGGAAGCAGCAGTGGAGGCGCCGATGGCGGCTGTGGCGGGGACTATAAGT
TCCCGGGCCGGTGCTTTAGGGGTGGACATCGTGGACATCAAGCGATCGGC
TGCACTACCAATGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGG
GTGGGGCCACATCAAAGAAAATTGCGCGACGGAGGAGGCCGTCCTAGCGC
AAGTGATGGAGCATGAGAGCGACGTGGACTCTGTGGAAGACCAGGCGTTT
TGTGCCGTGGCTGTCCCCACAGCCACCCCAACTGACCTCAACGAGTACCA
CCTTGCGCACGACCATGCCCACGAGACATTGCTCAGGATCACGGCGGAGC
AGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTCTTGGCTGT
TCGATGTCCAAAGGACAGCTGCTACCTCTCGCAGATGACGAGGAGGGCGG
GGAGGGAAAGAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGANG
GTGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAATGAGAAGGAC
TTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTG
AGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCG
TTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGAAATTCCGGGGGA
CGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGGCCCTTCGGGAAGGAGCGA
CTTCGGCGGAGGCAGTGACAGCTCCACCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCATCAGCAGCCCGAGCAGCAACAGCAGTGACGCC
GGTGGTGCCGGCGGCCCCGGCGGCGAAGAGTCCGGCGACCCAGGTGGGGA
CGGCGGTAGCGATGGTGANAAATTCCGGGGGACGGAGGCAGCGTTCCCCC
GTCGCCCCCTTCGGCCCTTCGGGAAGGAGCGACTTCGGCGGAGGCAGTGA
CAGCTCCACCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCAGCAGCCCGAGCAGCAACAGCAGTGACGCCGGTGGTGCCGGCGGCCCC
GGCGGCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGA
TCCCGGCGACTCCGAGAACCTTGAGGAGTTGAAGTATGATCCAGCCGACG
ACCGCTACCCCCGCAGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCG
AACGCTGGCCCGCTGCGCCATGGGCTCGAGAGTGGCCGCACGCGGAAGCA
GACCCGGGAGAAGAAAGGTGCCGGGGAGATGCCGGGACCCGGAGAAACAC
CGGACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAACTGGCGGGACG
GGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGA
CGAGGAGCAGACACGCCGTATGGAGGAAATGTACAGGCGCGAGATGCAGG
AGGTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGC
GGGTCTTCGCAACCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAAT
CGGGCAGAAGCCGAGTGATGTGAAAGCAGTGCCGATGACGTACAAGGATG
TGATGTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAG
ATAGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCC
CGAGGGGCGGAAGGCCATAGGTTCAAAGTGGGTGTTCTCTTGGAAGACGA
ATGAGAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGT
TTCTCTCAAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGCCC
GTCTGCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCA
AGAAACTCGGTCACTGGGATGTGAAGCAAGCGTACATCCACGCTAAGCTA
AAAGAAGAAATATACCTCAGGTTCCCAGAGGGCTGTGATAGCATGTCCGG
CAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCC
CTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATAGATACGAG
CAGTGCAGGGTTGACCCGTGTGTCTTCAGGAAGGTGCTGGATGGAGAGGT
CGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNN back to topCoding sequence (CDS) from alignment at Scaffold_70:174373..177076+ >EsuBft1352_3a-0001 ID=EsuBft1352_3a-0001|Name=EsuBft1352_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2553bp|location=Sequence derived from alignment at Scaffold_70:174373..177076+ (Ectocarpus subulatus male Bft15b) ATGATCGAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAA AGGGGCGAAGGGCGCAGAGCAAGCGTACTTTGCCGACGGTGAGGGCCGCA AGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGC GGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGG CGGCGTCGGCGGCGGTCGCGGCGGCCGCTCAGGCAGATCCGGAGGAGTCG AGGAGAGCCAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCTGTGGCGGG GACTATAAGTTCCCGGGCCGGTGCTTTAGGGGTGGACATCGTGGACATCA AGCGATCGGCTGCACTACCAATGAGAAGGACTTCGTGCCGTGGTGTGCGC GCTGCGAGGGGTGGGGCCACATCAAAGAAAATTGCGCGACGGAGGAGGCC GTCCTAGCGCAAGTGATGGAGCATGAGAGCGACGTGGACTCTGTGGAAGA CCAGGCGTTTTGTGCCGTGGCTGTCCCCACAGCCACCCCAACTGACCTCA ACGAGTACCACCTTGCGCACGACCATGCCCACGAGACATTGCTCAGGATC ACGGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTG TCTTGGCTGTTCGATGTCCAAAGGACAGCTGCTACCTCTCGCAGATGACG AGGAGGGCGGGGAGGGAAAGAGCAGAGCGGATGCATCACGCCAAGGTTGG GGGGGGGANGGTGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAA TGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNAGAGTGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCA AGCGACGCCGTTTGTGCGCGAGGAGGCGCCGACGGCACCCGGCAACGAAA TTCCGGGGGACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGGCCCTTCGG GAAGGAGCGACTTCGGCGGAGGCAGTGACAGCTCCACCGACAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCCCGAGCAGCAACAG CAGTGACGCCGGTGGTGCCGGCGGCCCCGGCGGCGAAGAGTCCGGCGACC CAGGTGGGGACGGCGGTAGCGATGGTGANAAATTCCGGGGGACGGAGGCA GCGTTCCCCCGTCGCCCCCTTCGGCCCTTCGGGAAGGAGCGACTTCGGCG GAGGCAGTGACAGCTCCACCGACAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCATCAGCAGCCCGAGCAGCAACAGCAGTGACGCCGGTGGTGC CGGCGGCCCCGGCGGCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTA GCGATGGTGATCCCGGCGACTCCGAGAACCTTGAGGAGTTGAAGTATGAT CCAGCCGACGACCGCTACCCCCGCAGGCTAGAAGGGAAGAAACTCCTCTG GGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGGCTCGAGAGTGGCCGCA CGCGGAAGCAGACCCGGGAGAAGAAAGGTGCCGGGGAGATGCCGGGACCC GGAGAAACACCGGACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAAC TGGCGGGACGGGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGG AGCAGTGGGACGAGGAGCAGACACGCCGTATGGAGGAAATGTACAGGCGC GAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGT CGACGCCAGCGGGTCTTCGCAACCACTCCCAGACCCACAGCTAAGTATGA CCTCGCCAATCGGGCAGAAGCCGAGTGATGTGAAAGCAGTGCCGATGACG TACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCAT GAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCA AGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAGTGGGTGTTCTCT TGGAAGACGAATGAGAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGT TGCGCGGGGTTTCTCTCAAATCCCCGGCATCGACTTCCACCACTCATCCT CAGCGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACT GAAAAGGGCAAGAAACTCGGTCACTGGGATGTGAAGCAAGCGTACATCCA CGCTAAGCTAAAAGAAGAAATATACCTCAGGTTCCCAGAGGGCTGTGATA GCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAG CAGAGTGGCCCTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAA TAGATACGAGCAGTGCAGGGTTGACCCGTGTGTCTTCAGGAAGGTGCTGG ATGGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTN NNN back to top
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