EsuBft1352_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1352_2a-0001
Unique NameEsuBft1352_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:173745..174371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1352_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2aEsuBft1352_2aEctocarpus subulatus male Bft15bgeneScaffold_70 173745..174371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2a-0001-exonEsuBft1352_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 173745..174371 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2a-0001-exonagat-five_prime_utr-2106Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 173745..173782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2a-0001-cdsEsuBft1352_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 173783..174235 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2a-0001-exonagat-three_prime_utr-3201Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 174236..174371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_2a-0001EsuBft1352_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 173783..174235 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1352_2a-0001 ID=EsuBft1352_2a-0001|Name=EsuBft1352_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_70:173745..174371+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGCTGCTCACAACCAAGATTATAGTACAATAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATGCGGAACCACAACCCCAGCGACGGGGTA
CCAAAGTGTGCGGTACACTTCTCCGTTCAGCGGGAAATCGAAAGATTTCA
ACGAATGGCTAAATGATTTCCGCATGACAGCTAATGGCGCAAACCTGTTG
GAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAACAGCGGAAA
GAGCAAGTTTTCGCTGTCGCAGCAGTACCGGAGCGAGCAAGTAGAGCTCG
CATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAGAAAGATCGG
AAAATCATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAA
GACCATACACGACCCTGAATCATCTGTTCAGCCGTCAGAGGACCTCAAGT
CCCTGACGTCGACCAAGATCTCTCGAGGTGAAAACCCCTAAAACGCCCTC
AATGAGATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGGACTATCTGT
CAACGAAACATTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGA
ATGCCATGACAAAGCGCAACCTGCGAC
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protein sequence of EsuBft1352_2a-0001

>EsuBft1352_2 ID=EsuBft1352_2|Name=EsuBft1352_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MGDGGAAVGFGCGTTTPATGYQSVRYTSPFSGKSKDFNEWLNDFRMTANG
ANLLEQFEESGSLEIPVNSGKSKFSLSQQYRSEQVELAFHAWNFLSHALK
EKDRKIMKRAETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENP
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mRNA from alignment at Scaffold_70:173745..174371+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1352_2a-0001 ID=EsuBft1352_2a-0001|Name=EsuBft1352_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_70:173745..174371+ (Ectocarpus subulatus male Bft15b)
GCCGCTGCTCACAACCAAGATTATAGTACAATAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATGCGGAACCACAACCCCAGCGACGGGGTA
CCAAAGTGTGCGGTACACTTCTCCGTTCAGCGGGAAATCGAAAGATTTCA
ACGAATGGCTAAATGATTTCCGCATGACAGCTAATGGCGCAAACCTGTTG
GAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAACAGCGGAAA
GAGCAAGTTTTCGCTGTCGCAGCAGTACCGGAGCGAGCAAGTAGAGCTCG
CATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAGAAAGATCGG
AAAATCATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAA
GACCATACACGACCCTGAATCATCTGTTCAGCCGTCAGAGGACCTCAAGT
CCCTGACGTCGACCAAGATCTCTCGAGGTGAAAACCCCTAAAACGCCCTC
AATGAGATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGGACTATCTGT
CAACGAAACATTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGA
ATGCCATGACAAAGCGCAACCTGCGAC
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Coding sequence (CDS) from alignment at Scaffold_70:173745..174371+

>EsuBft1352_2a-0001 ID=EsuBft1352_2a-0001|Name=EsuBft1352_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_70:173745..174371+ (Ectocarpus subulatus male Bft15b)
ATGGGAGATGGTGGTGCTGCTGTTGGCTTTGGATGCGGAACCACAACCCC
AGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCGTTCAGCGGGAAAT
CGAAAGATTTCAACGAATGGCTAAATGATTTCCGCATGACAGCTAATGGC
GCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGT
CAACAGCGGAAAGAGCAAGTTTTCGCTGTCGCAGCAGTACCGGAGCGAGC
AAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAA
GAGAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCCCAGGGAGCTCT
TCGTGAGCTCAAGACCATACACGACCCTGAATCATCTGTTCAGCCGTCAG
AGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTCGAGGTGAAAACCCC
TAA
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