EsuBft1350_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1350_9a-0001
Unique Name	EsuBft1350_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:372571..374676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85518
ProteomeId	EsuBft1350_9
Protein domains	SSF56672
Protein domains	Coil
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	2106
Hectar predicted targeting category	other localisation
Evalue	8.77e-90
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1350_9a	EsuBft1350_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 372571..374676 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1350_9a-0001-exon	EsuBft1350_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 372571..374676 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1350_9a-0001-cds	EsuBft1350_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 372571..374676 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1350_9a-0001	EsuBft1350_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 372571..374676 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:372571..374676+
coding sequence from alignment at Scaffold_30:372571..374676+

spliced messenger RNA

>EsuBft1350_9a-0001 ID=EsuBft1350_9a-0001|Name=EsuBft1350_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_30:372571..374676+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGACGG
GCACGAGGACGAACATGGAAACGGGCAAGATCTCGGCGACGGGGACGCTC
CATCACCACATCTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCCAC
GCATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACTTC
TGCATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCA
GCACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTT
CCTGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTAC
AACGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGA
TAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCC
CACGTTGCGGAAGACCCCTTCACGGTGCCGCGTGCTCACGCCTACGTCAC
GACCACTCACGAACACCACGGGATCTTGGAGGAGACGAATCAAGCGATCA
AAATCCCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAA
TGGAAAGGAGCGTGCAGCAAGGAAATGTACAATCTGCGGAAACACAACGT
CTACATTCTGGTGCCCCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTCG
GAACGAAATTCGTCTTCAAGAAAACGCTGGACGGACGCTTCAAAGCTCGC
CTGGTAGTCGGAGGACATCGTCAAGAGCCAGGACAGGACTACGGACGCAG
CTACGCACCAGTATGCCGTATCGGGAGCATTCGGATGACGTGCGCCATTG
GCTGCCACAACAACTGGCCCATCTACCAACTGGACGTTGTCGGTGCCTTC
CTGAACGCCCTCTGCGACAGAGATGTGTACGTCAGACCCGCCCCCGGTAC
ATCCGCCAAGAACTCCGCGACGGGAGAACCCATGGTGTACAAACTAGAAC
GGAGCCTCTACGGCCTATCGCAGTCGCATGCGCTCTGGAACGACACCCTG
GACGAATCCCTCACGGTGTTGGGATGGAAAAGGACTCAATCCGACCCCTG
CGTGTACGTGTATACCAGCGGCAACATCATCGTGATTCTCACGGTCTACG
TAGACGACATTCTCATCACAGGAGGAGACCAGCAGCTCGTGGACCAGAAG
AAGAAGGAGCTCACGGATCGATTCGAGATGACCGACATGGGAGAGGTAAA
GCGGATCCTCGGGATCGACGTGCAGCGAGACTACGAGCAAGGAACCCTGG
CCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGCGGTTCGGAATG
CAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCGGAAATCTCCAC
GAATCAACCTCAGGACCAAATCCTAGGACCCACGGACAAGAAAATCTACC
AGTCGATGGCGGGAAGCATCCTCTACCTGGCCCAGTGCACGCGATTCGAC
CTCTCCTACGCTGCCCTACAACTTTCCAAGGCCTGCAGCAACCCAGCGCA
GGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGGGGTAATC
CAGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTT
ACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTACCACGGG
ATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGAAGACTC
AAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGC
TACTCAGCCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGAACTCAA
CTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGC
TGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGCC
CTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAATCACTCT
TCACCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGTACC
TCCCAAAGCACCGATTCGCCTCCATCATTCAGCAGATTAAGGACTTCTCG
TGTTGA

protein sequence of EsuBft1350_9a-0001

>EsuBft1350_9 ID=EsuBft1350_9|Name=EsuBft1350_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=701bp
MQQDNLAREKLRLELDGHEDEHGNGQDLGDGDAPSPHLPSTPAGSSSETH
ASSPSPSSSNPTEPDTSASTGSSGMRRLQVTRASTRGKPTSDDHIDVNLV
PANLEVTMNDRGRAHATTGRVEPSGLSFTQLAEIADQAQLPCPGDTEDFA
HVAEDPFTVPRAHAYVTTTHEHHGILEETNQAIKIPNTYDEAMSSPQREE
WKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKAR
LVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF
LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTL
DESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQK
KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGM
QEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFD
LSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAF
TDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALS
YSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVA
LRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS
C

mRNA from alignment at Scaffold_30:372571..374676+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1350_9a-0001 ID=EsuBft1350_9a-0001|Name=EsuBft1350_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_30:372571..374676+ (Ectocarpus subulatus male Bft15b)
ATGCAGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGACGG
GCACGAGGACGAACATGGAAACGGGCAAGATCTCGGCGACGGGGACGCTC
CATCACCACATCTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCCAC
GCATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACTTC
TGCATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCA
GCACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTT
CCTGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTAC
AACGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGA
TAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCC
CACGTTGCGGAAGACCCCTTCACGGTGCCGCGTGCTCACGCCTACGTCAC
GACCACTCACGAACACCACGGGATCTTGGAGGAGACGAATCAAGCGATCA
AAATCCCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAA
TGGAAAGGAGCGTGCAGCAAGGAAATGTACAATCTGCGGAAACACAACGT
CTACATTCTGGTGCCCCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTCG
GAACGAAATTCGTCTTCAAGAAAACGCTGGACGGACGCTTCAAAGCTCGC
CTGGTAGTCGGAGGACATCGTCAAGAGCCAGGACAGGACTACGGACGCAG
CTACGCACCAGTATGCCGTATCGGGAGCATTCGGATGACGTGCGCCATTG
GCTGCCACAACAACTGGCCCATCTACCAACTGGACGTTGTCGGTGCCTTC
CTGAACGCCCTCTGCGACAGAGATGTGTACGTCAGACCCGCCCCCGGTAC
ATCCGCCAAGAACTCCGCGACGGGAGAACCCATGGTGTACAAACTAGAAC
GGAGCCTCTACGGCCTATCGCAGTCGCATGCGCTCTGGAACGACACCCTG
GACGAATCCCTCACGGTGTTGGGATGGAAAAGGACTCAATCCGACCCCTG
CGTGTACGTGTATACCAGCGGCAACATCATCGTGATTCTCACGGTCTACG
TAGACGACATTCTCATCACAGGAGGAGACCAGCAGCTCGTGGACCAGAAG
AAGAAGGAGCTCACGGATCGATTCGAGATGACCGACATGGGAGAGGTAAA
GCGGATCCTCGGGATCGACGTGCAGCGAGACTACGAGCAAGGAACCCTGG
CCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGCGGTTCGGAATG
CAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCGGAAATCTCCAC
GAATCAACCTCAGGACCAAATCCTAGGACCCACGGACAAGAAAATCTACC
AGTCGATGGCGGGAAGCATCCTCTACCTGGCCCAGTGCACGCGATTCGAC
CTCTCCTACGCTGCCCTACAACTTTCCAAGGCCTGCAGCAACCCAGCGCA
GGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGGGGTAATC
CAGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTT
ACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTACCACGGG
ATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGAAGACTC
AAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGC
TACTCAGCCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGAACTCAA
CTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGC
TGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGCC
CTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAATCACTCT
TCACCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGTACC
TCCCAAAGCACCGATTCGCCTCCATCATTCAGCAGATTAAGGACTTCTCG
TGTTGA

Coding sequence (CDS) from alignment at Scaffold_30:372571..374676+

>EsuBft1350_9a-0001 ID=EsuBft1350_9a-0001|Name=EsuBft1350_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2106bp|location=Sequence derived from alignment at Scaffold_30:372571..374676+ (Ectocarpus subulatus male Bft15b)
ATGCAGCAAGACAATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGACGG
GCACGAGGACGAACATGGAAACGGGCAAGATCTCGGCGACGGGGACGCTC
CATCACCACATCTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCCAC
GCATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACTTC
TGCATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCA
GCACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTT
CCTGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTAC
AACGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGA
TAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTTCGCC
CACGTTGCGGAAGACCCCTTCACGGTGCCGCGTGCTCACGCCTACGTCAC
GACCACTCACGAACACCACGGGATCTTGGAGGAGACGAATCAAGCGATCA
AAATCCCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAA
TGGAAAGGAGCGTGCAGCAAGGAAATGTACAATCTGCGGAAACACAACGT
CTACATTCTGGTGCCCCTCAGCAGCGTTCCCGAGGGAGAGAAGATCCTCG
GAACGAAATTCGTCTTCAAGAAAACGCTGGACGGACGCTTCAAAGCTCGC
CTGGTAGTCGGAGGACATCGTCAAGAGCCAGGACAGGACTACGGACGCAG
CTACGCACCAGTATGCCGTATCGGGAGCATTCGGATGACGTGCGCCATTG
GCTGCCACAACAACTGGCCCATCTACCAACTGGACGTTGTCGGTGCCTTC
CTGAACGCCCTCTGCGACAGAGATGTGTACGTCAGACCCGCCCCCGGTAC
ATCCGCCAAGAACTCCGCGACGGGAGAACCCATGGTGTACAAACTAGAAC
GGAGCCTCTACGGCCTATCGCAGTCGCATGCGCTCTGGAACGACACCCTG
GACGAATCCCTCACGGTGTTGGGATGGAAAAGGACTCAATCCGACCCCTG
CGTGTACGTGTATACCAGCGGCAACATCATCGTGATTCTCACGGTCTACG
TAGACGACATTCTCATCACAGGAGGAGACCAGCAGCTCGTGGACCAGAAG
AAGAAGGAGCTCACGGATCGATTCGAGATGACCGACATGGGAGAGGTAAA
GCGGATCCTCGGGATCGACGTGCAGCGAGACTACGAGCAAGGAACCCTGG
CCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGCGGTTCGGAATG
CAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCGGAAATCTCCAC
GAATCAACCTCAGGACCAAATCCTAGGACCCACGGACAAGAAAATCTACC
AGTCGATGGCGGGAAGCATCCTCTACCTGGCCCAGTGCACGCGATTCGAC
CTCTCCTACGCTGCCCTACAACTTTCCAAGGCCTGCAGCAACCCAGCGCA
GGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGGGGTAATC
CAGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGCGGCGTTT
ACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTACCACGGG
ATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCGAAGACTC
AAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGATTCAAGCACTTAGC
TACTCAGCCAGAGAGGCGGTCTACATCTCAAATTTTATGACGGAACTCAA
CTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGCACCGGAGCGC
TGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGCC
CTGAGGTACTTTTTCATCCGGGAGCTAGTACTACGGGGACAAATCACTCT
TCACCACCGGCCCAGCGAGCACCAGTTGGCTGATATCGCGACCAAGTACC
TCCCAAAGCACCGATTCGCCTCCATCATTCAGCAGATTAAGGACTTCTCG
TGTTGA