EsuBft1350_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1350_8a-0001
Unique NameEsuBft1350_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:382131..383014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1350_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length36
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_8aEsuBft1350_8aEctocarpus subulatus male Bft15bgeneScaffold_30 382131..383014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_8a-0001-exonEsuBft1350_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 382131..382156 +
EsuBft1350_8a-0001-exonagat-exon-42523Ectocarpus subulatus male Bft15bexonScaffold_30 382678..383014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_8a-0001-cdsEsuBft1350_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 382131..382156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_8a-0001EsuBft1350_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 382131..383014 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1350_8a-0001 ID=EsuBft1350_8a-0001|Name=EsuBft1350_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_30:382131..383014+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATCACATCAAAACCTCAAGCTGGTGTGACCTCGGAGTGTCCAT
CGGCGTTGGCGGCGGGAAAGGGCTCCTGGGCGTGCTTATGATCTGCTACG
GCATTGGCTTAGTCGGCCGGACAAATTCACGAGGACAGTTGAACAACGCG
GCCGGCCTCATGGGCATTGCGCTCGGAACGGTCTGGTGCCTGTCATGGTC
TTCGGGCGTCGTCATCTGGGAGGGCGAGGTCGGTGCTACCTACGTGGGCA
TCATGTGGGGTGTGCCCATCGTGCTGGCGGCGGTGGTGGCGGCGTCCCGG
TGCTTCGTCGTCTACCGCGTTCGCACCAAGGACGAGCAAGAGCTGCCGGT
CTCCGGCGCATGA
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protein sequence of EsuBft1350_8a-0001

>EsuBft1350_8 ID=EsuBft1350_8|Name=EsuBft1350_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MKDHIKTSSWCDLGVSIGVGGGKGLLGVLMICYGIGLVGRTNSRGQLNNA
AGLMGIALGTVWCLSWSSGVVIWEGEVGATYVGIMWGVPIVLAAVVAASR
CFVVYRVRTKDEQELPVSGA
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mRNA from alignment at Scaffold_30:382131..383014+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1350_8a-0001 ID=EsuBft1350_8a-0001|Name=EsuBft1350_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_30:382131..383014+ (Ectocarpus subulatus male Bft15b)
ATGAAAGATCACATCAAAACCTCAAGGTAATATTCTTGTGGTATAAAAAG
GAGCTAAAATCCAAAGATCAAACACCACGTCTGCTCCTTCTGGGAGTGTG
AAGATGCGAAAGTTTTGGGGGTAGTGAAAAGGAGTGGTTCTCCGTGACAT
AACCAACAACGGCCACTTCATGCGGACCGATACTGTACCCGAAAACTTCG
TCGAGATCATGAAGCCGTTGCTGGGTCATCCCCTTCCTGTTCTCCACCTT
CCACAACGGCCTCCTTTGTGGGTTATATAGATTCCCCCGACTACGCACCG
CCCCCCCCTAACGCACTTGCCTACCGTACGTCATCGGTGCATCCTCATTC
CCCACATATTCCGATAATATTCGATGCAATGCGTGTGCTTGTTGCTCCCT
CGCAGCGTTGGTTTTGCTTCCCTAACCCAAACCACCCACATTCCCTTTCG
CGTCACCGACGATTCTGTTGGCGACAAACTAGCCTCTACCGCCTCCCCCC
CTTGAGAGAAGAGCTTGACCTGTCCACGTGCAGCAGTGCGGGCGCAGCTG
GTGTGACCTCGGAGTGTCCATCGGCGTTGGCGGCGGGAAAGGGCTCCTGG
GCGTGCTTATGATCTGCTACGGCATTGGCTTAGTCGGCCGGACAAATTCA
CGAGGACAGTTGAACAACGCGGCCGGCCTCATGGGCATTGCGCTCGGAAC
GGTCTGGTGCCTGTCATGGTCTTCGGGCGTCGTCATCTGGGAGGGCGAGG
TCGGTGCTACCTACGTGGGCATCATGTGGGGTGTGCCCATCGTGCTGGCG
GCGGTGGTGGCGGCGTCCCGGTGCTTCGTCGTCTACCGCGTTCGCACCAA
GGACGAGCAAGAGCTGCCGGTCTCCGGCGCATGA
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Coding sequence (CDS) from alignment at Scaffold_30:382131..383014+

>EsuBft1350_8a-0001 ID=EsuBft1350_8a-0001|Name=EsuBft1350_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_30:382131..383014+ (Ectocarpus subulatus male Bft15b)
ATGAAAGATCACATCAAAACCTCAAGCTGGTGTGACCTCGGAGTGTCCAT
CGGCGTTGGCGGCGGGAAAGGGCTCCTGGGCGTGCTTATGATCTGCTACG
GCATTGGCTTAGTCGGCCGGACAAATTCACGAGGACAGTTGAACAACGCG
GCCGGCCTCATGGGCATTGCGCTCGGAACGGTCTGGTGCCTGTCATGGTC
TTCGGGCGTCGTCATCTGGGAGGGCGAGGTCGGTGCTACCTACGTGGGCA
TCATGTGGGGTGTGCCCATCGTGCTGGCGGCGGTGGTGGCGGCGTCCCGG
TGCTTCGTCGTCTACCGCGTTCGCACCAAGGACGAGCAAGAGCTGCCGGT
CTCCGGCGCATGA
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