EsuBft1332_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1332_5a-0001
Unique NameEsuBft1332_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:379615..382292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1332_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length221
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_001750.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5aEsuBft1332_5aEctocarpus subulatus male Bft15bgeneScaffold_94 379615..382292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5a-0001EsuBft1332_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 380225..382220 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5a-0001-exonEsuBft1332_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 379615..381441 -
EsuBft1332_5a-0001-exonagat-exon-36558Ectocarpus subulatus male Bft15bexonScaffold_94 381513..381519 -
EsuBft1332_5a-0001-exonagat-exon-36559Ectocarpus subulatus male Bft15bexonScaffold_94 381912..382292 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5a-0001-exonagat-three_prime_utr-3058Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_94 379615..380224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5a-0001-cdsEsuBft1332_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 380225..381441 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1332_5a-0001-exonagat-five_prime_utr-2009Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_94 382221..382292 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1332_5a-0001 ID=EsuBft1332_5a-0001|Name=EsuBft1332_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2215bp|location=Sequence derived from alignment at Scaffold_94:379615..382292- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCTCGCTGCAGGCGTCGCCGCAGGAACCCGAGGAAGAGCCGGAAGAGGG
CGAGCTGGTCCTCGACCCTTCGATGGCGCTGCCCAACCCACCGGCGCCAT
CCGTGAGGAAATCCCGCTGGGGGAACGTGGAGAGAGCGGCCACGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGACAGGGGTTTCGTCGCCGCCGCCGC
CCGTGGAGAATCCCGGTGGTCGCAAGAAGAGAAGGGAGAAAGGTCGGTTG
GTGATGGCGACGGAGGCAAGCGGACTCCAGGGGGTGGGGATGATGCTGGC
GAGAGTGGAGAGCTCACGGTGGCTACCGAAGACCAAACCGACGTCATCGA
AGAGGAACTCAGCATCGCCGCAGAGGTCCCCGCGTGGGACAGCATCATCG
TCGAGAAAGGGATTGGCGGAGGAGGAGACAACGGCAACGACTTCGCCCGA
GATAGAGACTCAAGCCTCTTCTTCTTCAGCGGCACAATCGTCGAAAGAAC
GCCCTTCCTCGTCACCGACCGTCACGGCAGACGAACGAGGGGGATCGAAC
GAGAGCGGTAGAAATCGGGAAGCAGCGGCTCCCGCGGACGACAACCCAGG
ACCCGAGTTGCTGCCGGAACAGACGTCGACGGTCGAGGACAGGGGACAAC
AGGAAACACAAGAAGGACGTGATGCGTCTTCTTCGGCCGCCGGAGCCGAG
GGAGAGGCACCCGTCGAGCGCTCAGGAGTCAAGAAGCCAAGCGACGCCGC
CTCCTGCGGGAAGCCAAGCGGAGGTGAAGCGAGCGACGGGCCCGAAGCAG
ACGACGCATCCTCCCCGGTAGCCGCCGCTCGCCAGCCCGCTTCCTTGCAG
AGGAGCGATTCCGACCATTCTACGGGCGGGACGCCCGATGCATCGGCGGC
GGGGGTGCGCCACAGGAGGCGTTCTTCCGGCGACATCGGGTCCTTCCTCA
GGAAGGGCGGCCGTAGGAGACCGGGGGAACCCGCCTCGCCGGCCGCCGCG
CCAGCCGCCGAGGCCACCGTCGAAACGGCGGCGGGCCCGTCGTCGTCTGC
TCCGGACCCCAGTAGTCCGGTGGAAGGCACGCCTTCAGCACCCGACGTGG
GGGGCTCCGCGGTCGAGACGAAGACGCAACGGGCGAGCGTGTTCTCGCGC
CTCGGGGCCCCGCCGAGCGAAGCTAAGAAAGACGGCAAGACCCCCCCCTC
TGCCGCTAACCCGTCGGGGACCCCTGAGGCCGCCCCCGCTCGGGGACTGC
ACGCCTGGGGGAGCTGTACCTCCACTGCCGCCGACGGTCCAGCGAGCGGC
GAAGGCAAGAACGCCGCCGGTGCTACCGCGGCCTCCGACGATTCACCAGC
GCTTGCACCGATAAGGAGAGTCAAGGGCAGCGGGGACAAGCACGACGGGA
GGAAGGTCGGGGGAGGGGCAGGACGGCTCATGAACGCCGCCCTGTCCAGC
TCGCGTGAAAGCGGGCGAAGCGCGAAGAGGGGTATGGCAGGCGGGCGGGG
GCGGGACGGCAGAGGGTGGGGACGGGGCGGCGGAAGCGGGGGCGGCAATG
ACTGAACGGTGCTTTTTTTGCGTTCGCGTCGAATGTTGTCACAGAGGCGG
CGGCAAGCGATGGCGACAAATTTGGCGCAGGGTTAGGCGAGAGAGCCACA
GGGGTAGACGGCGAGGGGGGTTCGATCGGCGGCGAGGCCAAAACTAGCTC
CCCTGTACTTGGGTGCAAACTTCGAGCCCTTCGGTGTGTTTGGTGTCTCG
TGGTGATTCGCGTTGTTCGTGGTCTATACAGTGAGGTGTTGAGATCGAAG
TCGGCCAATTGTTGTTTTTGCTCTTGGTGGTGGTTGCGCGTGTTACACCT
CTGCCGCTCTGCTTCGGACGACGTATTTTTCGTTGCTGCGCGTCTAAAGG
GCGCCTGGTTTTGCTCGATCTTGTTTCAGAATGGAGTATTTGCTAGCCCG
GGCGGGTCCTGCGGATGATGCGCCTACGACCTCGAACGACGCAACAGCAA
CATAGCAAGGGTGATGGCTTCTTCTTCGAGGTGCGTAGGAGGTACATGGA
GGGATTCGTGCAGACACAGACGTGCGCGTGCACCTCTCGGGTCCAGACAA
GCGACGTATTCCACTGGTTTGAGGTTATCATTACGTGAGCGAGCTCTCTC
GATATCCAAGCAACG
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protein sequence of EsuBft1332_5a-0001

>EsuBft1332_5 ID=EsuBft1332_5|Name=EsuBft1332_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=510bp
MALPNPPAPSVRKSRWGNVERAATXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGVSSPPPPVENPGGRKKRREKGRLVMATEASGLQGVGMMLARVESSRW
LPKTKPTSSKRNSASPQRSPRGTASSSRKGLAEEETTATTSPEIETQASS
SSAAQSSKERPSSSPTVTADERGGSNESGRNREAAAPADDNPGPELLPEQ
TSTVEDRGQQETQEGRDASSSAAGAEGEAPVERSGVKKPSDAASCGKPSG
GEASDGPEADDASSPVAAARQPASLQRSDSDHSTGGTPDASAAGVRHRRR
SSGDIGSFLRKGGRRRPGEPASPAAAPAAEATVETAAGPSSSAPDPSSPV
EGTPSAPDVGGSAVETKTQRASVFSRLGAPPSEAKKDGKTPPSAANPSGT
PEAAPARGLHAWGSCTSTAADGPASGEGKNAAGATAASDDSPALAPIRRV
KGSGDKHDGRKVGGGAGRLMNAALSSSRESGRSAKRGMAGGRGRDGRGWG
RGGGSGGGND
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mRNA from alignment at Scaffold_94:379615..382292-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1332_5a-0001 ID=EsuBft1332_5a-0001|Name=EsuBft1332_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2678bp|location=Sequence derived from alignment at Scaffold_94:379615..382292- (Ectocarpus subulatus male Bft15b)
GCCTCGCTGCAGGCGTCGCCGCAGGAACCCGAGGAAGAGCCGGAAGAGGG
CGAGCTGGTCCTCGACCCTTCGATGGCGCTGCCCAACCCACCGGCGCCAT
CCGTGAGGAAATCCCGCTGGGGGAACGTGGAGAGAGCGGCCACGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGACAGGGGTTTCGTCGCCGCCGCCGC
CCGTGGAGAATCCCGGTGGTCGCAAGAAGAGAAGGGAGAAAGGTCGGTTG
GTGATGGCGACGGAGGCAAGCGGACTCCAGGGGGTGGGGATGATGCTGGC
GAGAGTGGAGAGCTCACGGTGGCTACCGAAGGTGCGAGCGTGCGTCACTG
AGTAGTGGCACATCTCGTGTGCAGGCAGACGTCGGCAATGCATGCTGGAG
GGGCACCGTGATGAGAATCTTGTGCCGGTGACAATGGGTGGTGTGTGGTG
CCCCCCTTTCCTTGTCTTATTTCCTAGTTTCTCTCTTTTCGCTTCATCCG
TTCCCCATCACGTAGCGTAGCTGCGGTCGCGCATTTTTGGGCGTGCCACT
GGGGTATAATGGATGCATTTTTTTAGGCATCAACCTTTCTTCGGGTTGTG
TCATCTTTGGTAGATGCTCTGGGTTTTCTCCGCCACTACGCACTTCACCG
GCATAGGTCATTGACGGAGGAAATCTCTTGTTCACGCGGAAGTGCTGCTG
CGCAATCTAATGTACAGGGTTAGACCAAACGTGAACAACCAGCAACAAGA
GCACCAAGATGAGCAATGATAAAAGCGCCTCTGTATCTTCTCTCACCACA
GCGACGTCATCGAAGAGGAACTCAGCATCGCCGCAGAGGTCCCCGCGTGG
GACAGCATCATCGTCGAGAAAGGGATTGGCGGAGGAGGAGACAACGGCAA
CGACTTCGCCCGAGATAGAGACTCAAGCCTCTTCTTCTTCAGCGGCACAA
TCGTCGAAAGAACGCCCTTCCTCGTCACCGACCGTCACGGCAGACGAACG
AGGGGGATCGAACGAGAGCGGTAGAAATCGGGAAGCAGCGGCTCCCGCGG
ACGACAACCCAGGACCCGAGTTGCTGCCGGAACAGACGTCGACGGTCGAG
GACAGGGGACAACAGGAAACACAAGAAGGACGTGATGCGTCTTCTTCGGC
CGCCGGAGCCGAGGGAGAGGCACCCGTCGAGCGCTCAGGAGTCAAGAAGC
CAAGCGACGCCGCCTCCTGCGGGAAGCCAAGCGGAGGTGAAGCGAGCGAC
GGGCCCGAAGCAGACGACGCATCCTCCCCGGTAGCCGCCGCTCGCCAGCC
CGCTTCCTTGCAGAGGAGCGATTCCGACCATTCTACGGGCGGGACGCCCG
ATGCATCGGCGGCGGGGGTGCGCCACAGGAGGCGTTCTTCCGGCGACATC
GGGTCCTTCCTCAGGAAGGGCGGCCGTAGGAGACCGGGGGAACCCGCCTC
GCCGGCCGCCGCGCCAGCCGCCGAGGCCACCGTCGAAACGGCGGCGGGCC
CGTCGTCGTCTGCTCCGGACCCCAGTAGTCCGGTGGAAGGCACGCCTTCA
GCACCCGACGTGGGGGGCTCCGCGGTCGAGACGAAGACGCAACGGGCGAG
CGTGTTCTCGCGCCTCGGGGCCCCGCCGAGCGAAGCTAAGAAAGACGGCA
AGACCCCCCCCTCTGCCGCTAACCCGTCGGGGACCCCTGAGGCCGCCCCC
GCTCGGGGACTGCACGCCTGGGGGAGCTGTACCTCCACTGCCGCCGACGG
TCCAGCGAGCGGCGAAGGCAAGAACGCCGCCGGTGCTACCGCGGCCTCCG
ACGATTCACCAGCGCTTGCACCGATAAGGAGAGTCAAGGGCAGCGGGGAC
AAGCACGACGGGAGGAAGGTCGGGGGAGGGGCAGGACGGCTCATGAACGC
CGCCCTGTCCAGCTCGCGTGAAAGCGGGCGAAGCGCGAAGAGGGGTATGG
CAGGCGGGCGGGGGCGGGACGGCAGAGGGTGGGGACGGGGCGGCGGAAGC
GGGGGCGGCAATGACTGAACGGTGCTTTTTTTGCGTTCGCGTCGAATGTT
GTCACAGAGGCGGCGGCAAGCGATGGCGACAAATTTGGCGCAGGGTTAGG
CGAGAGAGCCACAGGGGTAGACGGCGAGGGGGGTTCGATCGGCGGCGAGG
CCAAAACTAGCTCCCCTGTACTTGGGTGCAAACTTCGAGCCCTTCGGTGT
GTTTGGTGTCTCGTGGTGATTCGCGTTGTTCGTGGTCTATACAGTGAGGT
GTTGAGATCGAAGTCGGCCAATTGTTGTTTTTGCTCTTGGTGGTGGTTGC
GCGTGTTACACCTCTGCCGCTCTGCTTCGGACGACGTATTTTTCGTTGCT
GCGCGTCTAAAGGGCGCCTGGTTTTGCTCGATCTTGTTTCAGAATGGAGT
ATTTGCTAGCCCGGGCGGGTCCTGCGGATGATGCGCCTACGACCTCGAAC
GACGCAACAGCAACATAGCAAGGGTGATGGCTTCTTCTTCGAGGTGCGTA
GGAGGTACATGGAGGGATTCGTGCAGACACAGACGTGCGCGTGCACCTCT
CGGGTCCAGACAAGCGACGTATTCCACTGGTTTGAGGTTATCATTACGTG
AGCGAGCTCTCTCGATATCCAAGCAACG
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Coding sequence (CDS) from alignment at Scaffold_94:379615..382292-

>EsuBft1332_5a-0001 ID=EsuBft1332_5a-0001|Name=EsuBft1332_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1533bp|location=Sequence derived from alignment at Scaffold_94:379615..382292- (Ectocarpus subulatus male Bft15b)
ATGGCGCTGCCCAACCCACCGGCGCCATCCGTGAGGAAATCCCGCTGGGG
GAACGTGGAGAGAGCGGCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGACAGGGGTTTCGTCGCCGCCGCCGCCCGTGGAGAATCCCGGTGGTCG
CAAGAAGAGAAGGGAGAAAGGTCGGTTGGTGATGGCGACGGAGGCAAGCG
GACTCCAGGGGGTGGGGATGATGCTGGCGAGAGTGGAGAGCTCACGGTGG
CTACCGAAGACCAAACCGACGTCATCGAAGAGGAACTCAGCATCGCCGCA
GAGGTCCCCGCGTGGGACAGCATCATCGTCGAGAAAGGGATTGGCGGAGG
AGGAGACAACGGCAACGACTTCGCCCGAGATAGAGACTCAAGCCTCTTCT
TCTTCAGCGGCACAATCGTCGAAAGAACGCCCTTCCTCGTCACCGACCGT
CACGGCAGACGAACGAGGGGGATCGAACGAGAGCGGTAGAAATCGGGAAG
CAGCGGCTCCCGCGGACGACAACCCAGGACCCGAGTTGCTGCCGGAACAG
ACGTCGACGGTCGAGGACAGGGGACAACAGGAAACACAAGAAGGACGTGA
TGCGTCTTCTTCGGCCGCCGGAGCCGAGGGAGAGGCACCCGTCGAGCGCT
CAGGAGTCAAGAAGCCAAGCGACGCCGCCTCCTGCGGGAAGCCAAGCGGA
GGTGAAGCGAGCGACGGGCCCGAAGCAGACGACGCATCCTCCCCGGTAGC
CGCCGCTCGCCAGCCCGCTTCCTTGCAGAGGAGCGATTCCGACCATTCTA
CGGGCGGGACGCCCGATGCATCGGCGGCGGGGGTGCGCCACAGGAGGCGT
TCTTCCGGCGACATCGGGTCCTTCCTCAGGAAGGGCGGCCGTAGGAGACC
GGGGGAACCCGCCTCGCCGGCCGCCGCGCCAGCCGCCGAGGCCACCGTCG
AAACGGCGGCGGGCCCGTCGTCGTCTGCTCCGGACCCCAGTAGTCCGGTG
GAAGGCACGCCTTCAGCACCCGACGTGGGGGGCTCCGCGGTCGAGACGAA
GACGCAACGGGCGAGCGTGTTCTCGCGCCTCGGGGCCCCGCCGAGCGAAG
CTAAGAAAGACGGCAAGACCCCCCCCTCTGCCGCTAACCCGTCGGGGACC
CCTGAGGCCGCCCCCGCTCGGGGACTGCACGCCTGGGGGAGCTGTACCTC
CACTGCCGCCGACGGTCCAGCGAGCGGCGAAGGCAAGAACGCCGCCGGTG
CTACCGCGGCCTCCGACGATTCACCAGCGCTTGCACCGATAAGGAGAGTC
AAGGGCAGCGGGGACAAGCACGACGGGAGGAAGGTCGGGGGAGGGGCAGG
ACGGCTCATGAACGCCGCCCTGTCCAGCTCGCGTGAAAGCGGGCGAAGCG
CGAAGAGGGGTATGGCAGGCGGGCGGGGGCGGGACGGCAGAGGGTGGGGA
CGGGGCGGCGGAAGCGGGGGCGGCAATGACTGA
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