EsuBft1332_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1332_4a-0001
Unique Name	EsuBft1332_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:374779..379306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LF56
ProteomeId	EsuBft1332_4
Protein domains	PTHR23029
Protein domains	IPR029033
Protein domains	IPR013078
Owner	apollo_admin@sb-roscoff.fr
Note	probable fructose- -bisphosphatase tigar a os:danio rerio gn:tigara pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2880.D8LF56\|-
Length	2666
Hectar predicted targeting category	other localisation
Evalue	5.76e-167
EggNOG OGs	COG0588@1\|root,KOG0235@2759\|Eukaryota
Ec32 ortholog description	Phosphoglycerate mutase
Ec32 ortholog	Ec-06_001760.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	regulation of pentose-phosphate shunt
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a	EsuBft1332_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 374779..379306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a-0001	EsuBft1332_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 374816..377532 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a-0001-exon	EsuBft1332_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 374779..374916 +
EsuBft1332_4a-0001-exon	agat-exon-36556	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 376364..376609 +
EsuBft1332_4a-0001-exon	agat-exon-36557	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 377025..379306 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a-0001-exon	agat-five_prime_utr-2008	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 374779..374815 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a-0001-cds	EsuBft1332_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 374816..374916 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1332_4a-0001-exon	agat-three_prime_utr-3057	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 377533..379306 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:374779..379306+
coding sequence from alignment at Scaffold_94:374779..379306+

spliced messenger RNA

>EsuBft1332_4a-0001 ID=EsuBft1332_4a-0001|Name=EsuBft1332_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2666bp|location=Sequence derived from alignment at Scaffold_94:374779..379306+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCAGGGGAGAGAGAAAGAGAAGGAGTGAATGTGTGCATGGTCTCGACCA
GTCACAACATACCGCCGGTAGTGACAACGATGCCACGACTGCTGTGCACG
ATCCACTTCGTCCGGCATGGAGAGACAACCGCGAACCGGGAGGGCATTAT
CCAAGGGCACCAGGACTACGACCTAACCCCCATCGGCATAAACCAAGCGG
TCGCCACCGCTATCCGCCTTCGGGGCAACACGTACTGGCGGACCTACAGC
TCGGACCTGACGCGGGCGTCGCACACGGCCGAGATTATCCTTGAGGAACA
CCCGGGAGCGAATCTCCGCAAGACCCCGCTGCTGAGGGAGTTCGCGCTGG
GCGCGCAGGAGGGCTTGCCGCGTGGAACCACCTGGCCCAGAGCGCGTCGC
ATGAAGGCGGAAGCAGCGGGCGTGTCGCCGGTAGCGTACAAGGAGAGCCT
GCGCGAGAGCCCGGCGGACGTGCACAAGCGAGCCCAGCAGTTCCTCACAA
GCTTGGTCTCCGACGCCGTGCGGGCGGCGGACGACGGGACTGTCAACAGG
GTGGGCGAGGGACAAAACGGCCGCCACGATTCCGCCGCGGAAGCTGCAGC
CGCCGCCGAGGCAAGGCACAGGGACGAGAACGCGAGGCTCGCGCTCGTGG
TGTCCCACGGAGGAATCCTGAACGTGATGATGCTGACAGTCATGGGGCTC
GAGGAGAGGGCGTGCCCCCTCATGAGGAACTGCGCGGTGGCGGTGGTGGA
TGTCTTCGACGACGGCCGCGGCAAGGGCCGGGTGCGCTACGTTCCCCGAA
CGCTCAACGACGTGTCGCACTTCCAGGTGTCAGAGCTACCGGCGGTGTGC
CACTCCGGCGAAAACGGTCGCCAGAACGTGGTCAAATCATGATAACGAAG
GATGGTGGTGTGTGTTTTCTTGTCTATCGGGGGGCTGGGGGAGGCCAGAG
GCAGAGGCTTGCTGGCCTGTTGCGCGACGCTCCCGGAGTTGAGCTCGGGC
CTCTCACAACAAGCGGCGGTGCAACTTGTTGATAGTGATAGATTGTGGGA
GTCACCTAAACCCACCTCTTGGCAAGCATTTGTGGGTGCGGGAATCTGCC
CACAAACTTGTGCCATTGTGCACACGTCCGTGTATATGCCGACATGGTGC
GTTTGAAGTGTTGTTTCTTTATTTTCTTTCGGCGATCCGGATTGTTTTCA
TGCATTTCTTCCCACTTGTTGATACGGAACCTTCGTGCCCCTTTTCGTTA
GGACGCCGAGATCGGCTGTTCTGTTGCTGTCCTCGTTTACTCAATTGTGG
ATTTTCATGCACGGATTGTAGTACTGTAGAAAAGCACCCCCTCCACCCTC
GCACCCCCTTTTATGTTGGACTGGGTTGTGACCTGAATGTTTCTTTCGTC
CATCATGCATGTGTTTTTTAGTGGAAAACGCGTGCTGAGGGAACCTTGCC
GGTTTCTGTCAATAGGTGGCCTTAGGCGGTTTGTTTTTTTGCGGTGTTAC
GGAGGATGGTATTTTCTCTCCATCAGTTGATTTTTCCCTGCGATTTTTTC
GTCCCTTGTCTATCTTGCGCACGCACATCCGTTGGCACCATCGGTACATA
GCACATAGCGGGCGCACTATAAATACTAAGCAGTGATGTTTTCCTTTTTA
CGATACGAAGTGGACGTTGGTTCGATGTCTAAGCCTCGACGTCTTGTGGG
TTCTCGTGGGTATTCGAAGGCAGCGGTTTACACCCATTCTTTACGTACAG
CGGTGTGTTGGGCGGGCTTGAAGACTCGGAGTCCAGGAAGGGGAACACCA
GGCGACGAAGGAAAACGGAACGAATTTTGTTTTGCCTGTGGGATGAAAGC
TTGTTTCTTTGTGTTCTTGCAATGACACTCCCTCTTGGGCGTAGTCCATC
CGAAGGCGATGCACGGCAAGCGCGGATAGTCGAAGATGATGTCGTTGCGG
TGATCCAAGTCGTTACTTCCCTCGCACGCTGCCCCCTTGGTAGCAACGTG
GACGATCCTCCTGCGAAGGAGTACATCGTTGTTTGTGCAGGAAATTTTGT
GAAGGTAGCTGCAGCGCGGAAGCAGCAAATTTCATTTTTTTTTCCCAGGG
TATTAGTTGCGTGTCTGTGTGCAGTAGCGGGGAGCAGCAGGAGAATCAGT
GGTCAAGAAAGCAGGATTTTTTGCGTTTCATATCATTGTGGTACTACGGG
GGTAGGAAGCAGTAGCGTTTTCGTCGGGATTATTCTGCTGGTCTTCGGCC
GCCGCCTTTTTTTGTTTTCGCGGCTAAAAGACTGGAGAAATCCGTTTGCA
CCCTGTCTGGACTCCTCTTACTTCGTTGTCGCTTCCCCCCACTTTCATCA
CGGACTTGACGCTGGAGGGATTGGGAAAATAAACGCGCCAAGACAAGGGC
ACATGGCTTTTTCGCGTGTATTTTCTTGAGAGTTTTTCGCCATTTCGCCG
AGGGCTTTCCTTTCTTTTTATTTGTCGTTGTCGTACGTCAAGTCTAGACG
TCCCTCCGATGGCCGAAGGGCATCTTGCAGTACTGCTGTAGCACCCGTTC
CAGACGGGATTACGTGTTGCCGGGGAAATAAAATATAAGCGATAAGAGTG
TATACACCGAGGCTGCAGAAGAGGGGGTTATCGTCGTGAAGAGACGAGGA
GAGCCCACCTGCAAGC

protein sequence of EsuBft1332_4a-0001

>EsuBft1332_4 ID=EsuBft1332_4|Name=EsuBft1332_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MVSTSHNIPPVVTTMPRLLCTIHFVRHGETTANREGIIQGHQDYDLTPIG
INQAVATAIRLRGNTYWRTYSSDLTRASHTAEIILEEHPGANLRKTPLLR
EFALGAQEGLPRGTTWPRARRMKAEAAGVSPVAYKESLRESPADVHKRAQ
QFLTSLVSDAVRAADDGTVNRVGEGQNGRHDSAAEAAAAAEARHRDENAR
LALVVSHGGILNVMMLTVMGLEERACPLMRNCAVAVVDVFDDGRGKGRVR
YVPRTLNDVSHFQVSELPAVCHSGENGRQNVVKS

mRNA from alignment at Scaffold_94:374779..379306+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1332_4a-0001 ID=EsuBft1332_4a-0001|Name=EsuBft1332_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4528bp|location=Sequence derived from alignment at Scaffold_94:374779..379306+ (Ectocarpus subulatus male Bft15b)
GTCAGGGGAGAGAGAAAGAGAAGGAGTGAATGTGTGCATGGTCTCGACCA
GTCACAACATACCGCCGGTAGTGACAACGATGCCACGACTGCTGTGCACG
ATCCACTTCGTCCGGCATGGAGAGACAACCGCGAACCGGTGAGGCTCCAC
TTTTTGTCCGGATCTGCGTAAGCTTGACGGTCTTGTGCCTGCGGTTTGCT
GCAGTTGTTGCACGTAGATTCCGCGCAATTTTGTGTTCTTTGCCATCATA
CTGGGCAACTTGAATATGTGTTCCTTCTTCCCAGTGTGTGTGCGTTTGGC
ATCGCCCAGAGGTTGACAAGGTTGGGTGCTCCGCTCGCTGCTTGCTGCAT
CTATAAGCACTCGTGGTGTGATGAAGGTGGAATGTAATGCTGCTTTTTTC
TCCCCGTCCCGCCCAAAAACGGTTCGTGTGTGTCGGCGGGTTGATGTAGA
TGGCGCGTTGCTGGCAAACTGCCCGCCCACCTGGCGATATGTTCACGGCG
GCTTGGTCTTTGTTGCCATGTCTCTCGCGCTTGCTTCAGACTCTCGTTTT
TGCGATTCGCTGCCTAGCTCTGTGTAAGAGCGTAGCGGACTCTCTGCGGC
TATGTTCGGTGGAGAATGTTTACCAATCAATTGGTGTTTTTCCTTTGCAA
AAAAGTCTCAGCGCCATGTAAGGTCAACCGCCGGTGTCACCTGTGAGCCA
CCTTTGTAGCTCCCAGTTCCAATTCCAATGCGCACGTCTTCACACTAACA
CAACCATCGCACCATTCCGTCAGAAGGCTTGTTCTCGGACTTGCGTACCC
CCGACACTCCCTTATCGATACATCTCTTGCCGGCTTCACATGAGGGAAAG
TGCACATCTGTGTCTAGTTTGGATCGGCACAAAAAATGTCCAACTGCCAG
CAGGACTTACAACAGGAACAACTTTGCGTATTCCCAGGGAACGCACCCAC
AAAATTCTCCAAAAAGGACAATTCCTTTTGTAGGATCACCTTGGTCAAGG
TTTTCCTTTCAGATGAGTAGACTAGTCTAGTGCCTCACACAGGCGTCAAT
CCGAAATATGGGGGATATAACTGCTGTATATGCTTGGTATTGCCGCGACT
ACTTCGTTATGCGCGTGCGGTTTTCTGCGGGCTTGGTTGCACGCATGGTT
GGCGACAAACTATTTCACCGAGCGACTATAATCTTGAGCGCCGGCCGATG
ACTACGGAGATATGGTTGACGCGACCGCAGATCTCAGCGCGCGATGGTAC
TGTAGCACCGTATACATCTCGCTTCACTGCCTGGGGACGATTATCGTGGA
TGGGTTTATGCGAACAAAGGGCACGCAGCGAGTGCAATACAACAGCACCA
GCGGGATGGCTAGACAGAGACATGGAGTGCGTGCAATCGGGCGGGTTACA
GCGGCCCGTCGAGCGATATTTCAAACAACAAAAAGGTTGTTGTCACACAC
CCATAAACGTGTGCTTGCCAGAACAAAAAGGGCCAACTCTATGCTGCAAA
TATCTCGCGTACTTGCAACAAATCGCCTCACTCTCACCTGTCCGGTAACC
AGCTGATCCTTAATACTCCTGTGTCCTCGAAACAGGGAGGGCATTATCCA
AGGGCACCAGGACTACGACCTAACCCCCATCGGCATAAACCAAGCGGTCG
CCACCGCTATCCGCCTTCGGGGCAACACGTACTGGCGGACCTACAGCTCG
GACCTGACGCGGGCGTCGCACACGGCCGAGATTATCCTTGAGGAACACCC
GGGAGCGAATCTCCGCAAGACCCCGCTGCTGAGGGAGTTCGCGCTGGGCG
CGCAGGAGGGCTTGCCGCGTGGAACCACCTGGTGCGTGGCGGCGGTTCGT
TGTTTGTGTGCTTTGCGCGCGTGTGTGCGACTTTGAAGAGGCGATACAGC
GAAAAACGCGAGTCCAGACCCTGACTTTATTGTTGGTGTCCACAAGGAGA
TCTGGTTGGCAGTGACTCGACTACGATGCACTCGTATGGTGGGATGAAGC
CTTCGTACGTGCGGAGATAGAGCGAGAGATATGTGATCGTGCGTCAAGTA
ATGGAGTACCAGTAGCATGTAAGCAACGCCCACCCCCTCTTCTTCGGTAC
CCTCGAAAGTAGGCCGTCTTTGTTGGAGTAGCATGGTAATCGGCCTGCAG
CAGCGCCCCGACTGTAAAAACTTGTAAGGCCGTTGGCGATCGACCAAACT
TGCCGCGGACATCCAACGAACGACCCCCCCCCTCCCCCCCCGCAAGGCCC
AGAGCGCGTCGCATGAAGGCGGAAGCAGCGGGCGTGTCGCCGGTAGCGTA
CAAGGAGAGCCTGCGCGAGAGCCCGGCGGACGTGCACAAGCGAGCCCAGC
AGTTCCTCACAAGCTTGGTCTCCGACGCCGTGCGGGCGGCGGACGACGGG
ACTGTCAACAGGGTGGGCGAGGGACAAAACGGCCGCCACGATTCCGCCGC
GGAAGCTGCAGCCGCCGCCGAGGCAAGGCACAGGGACGAGAACGCGAGGC
TCGCGCTCGTGGTGTCCCACGGAGGAATCCTGAACGTGATGATGCTGACA
GTCATGGGGCTCGAGGAGAGGGCGTGCCCCCTCATGAGGAACTGCGCGGT
GGCGGTGGTGGATGTCTTCGACGACGGCCGCGGCAAGGGCCGGGTGCGCT
ACGTTCCCCGAACGCTCAACGACGTGTCGCACTTCCAGGTGTCAGAGCTA
CCGGCGGTGTGCCACTCCGGCGAAAACGGTCGCCAGAACGTGGTCAAATC
ATGATAACGAAGGATGGTGGTGTGTGTTTTCTTGTCTATCGGGGGGCTGG
GGGAGGCCAGAGGCAGAGGCTTGCTGGCCTGTTGCGCGACGCTCCCGGAG
TTGAGCTCGGGCCTCTCACAACAAGCGGCGGTGCAACTTGTTGATAGTGA
TAGATTGTGGGAGTCACCTAAACCCACCTCTTGGCAAGCATTTGTGGGTG
CGGGAATCTGCCCACAAACTTGTGCCATTGTGCACACGTCCGTGTATATG
CCGACATGGTGCGTTTGAAGTGTTGTTTCTTTATTTTCTTTCGGCGATCC
GGATTGTTTTCATGCATTTCTTCCCACTTGTTGATACGGAACCTTCGTGC
CCCTTTTCGTTAGGACGCCGAGATCGGCTGTTCTGTTGCTGTCCTCGTTT
ACTCAATTGTGGATTTTCATGCACGGATTGTAGTACTGTAGAAAAGCACC
CCCTCCACCCTCGCACCCCCTTTTATGTTGGACTGGGTTGTGACCTGAAT
GTTTCTTTCGTCCATCATGCATGTGTTTTTTAGTGGAAAACGCGTGCTGA
GGGAACCTTGCCGGTTTCTGTCAATAGGTGGCCTTAGGCGGTTTGTTTTT
TTGCGGTGTTACGGAGGATGGTATTTTCTCTCCATCAGTTGATTTTTCCC
TGCGATTTTTTCGTCCCTTGTCTATCTTGCGCACGCACATCCGTTGGCAC
CATCGGTACATAGCACATAGCGGGCGCACTATAAATACTAAGCAGTGATG
TTTTCCTTTTTACGATACGAAGTGGACGTTGGTTCGATGTCTAAGCCTCG
ACGTCTTGTGGGTTCTCGTGGGTATTCGAAGGCAGCGGTTTACACCCATT
CTTTACGTACAGCGGTGTGTTGGGCGGGCTTGAAGACTCGGAGTCCAGGA
AGGGGAACACCAGGCGACGAAGGAAAACGGAACGAATTTTGTTTTGCCTG
TGGGATGAAAGCTTGTTTCTTTGTGTTCTTGCAATGACACTCCCTCTTGG
GCGTAGTCCATCCGAAGGCGATGCACGGCAAGCGCGGATAGTCGAAGATG
ATGTCGTTGCGGTGATCCAAGTCGTTACTTCCCTCGCACGCTGCCCCCTT
GGTAGCAACGTGGACGATCCTCCTGCGAAGGAGTACATCGTTGTTTGTGC
AGGAAATTTTGTGAAGGTAGCTGCAGCGCGGAAGCAGCAAATTTCATTTT
TTTTTCCCAGGGTATTAGTTGCGTGTCTGTGTGCAGTAGCGGGGAGCAGC
AGGAGAATCAGTGGTCAAGAAAGCAGGATTTTTTGCGTTTCATATCATTG
TGGTACTACGGGGGTAGGAAGCAGTAGCGTTTTCGTCGGGATTATTCTGC
TGGTCTTCGGCCGCCGCCTTTTTTTGTTTTCGCGGCTAAAAGACTGGAGA
AATCCGTTTGCACCCTGTCTGGACTCCTCTTACTTCGTTGTCGCTTCCCC
CCACTTTCATCACGGACTTGACGCTGGAGGGATTGGGAAAATAAACGCGC
CAAGACAAGGGCACATGGCTTTTTCGCGTGTATTTTCTTGAGAGTTTTTC
GCCATTTCGCCGAGGGCTTTCCTTTCTTTTTATTTGTCGTTGTCGTACGT
CAAGTCTAGACGTCCCTCCGATGGCCGAAGGGCATCTTGCAGTACTGCTG
TAGCACCCGTTCCAGACGGGATTACGTGTTGCCGGGGAAATAAAATATAA
GCGATAAGAGTGTATACACCGAGGCTGCAGAAGAGGGGGTTATCGTCGTG
AAGAGACGAGGAGAGCCCACCTGCAAGC

Coding sequence (CDS) from alignment at Scaffold_94:374779..379306+

>EsuBft1332_4a-0001 ID=EsuBft1332_4a-0001|Name=EsuBft1332_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_94:374779..379306+ (Ectocarpus subulatus male Bft15b)
ATGGTCTCGACCAGTCACAACATACCGCCGGTAGTGACAACGATGCCACG
ACTGCTGTGCACGATCCACTTCGTCCGGCATGGAGAGACAACCGCGAACC
GGGAGGGCATTATCCAAGGGCACCAGGACTACGACCTAACCCCCATCGGC
ATAAACCAAGCGGTCGCCACCGCTATCCGCCTTCGGGGCAACACGTACTG
GCGGACCTACAGCTCGGACCTGACGCGGGCGTCGCACACGGCCGAGATTA
TCCTTGAGGAACACCCGGGAGCGAATCTCCGCAAGACCCCGCTGCTGAGG
GAGTTCGCGCTGGGCGCGCAGGAGGGCTTGCCGCGTGGAACCACCTGGCC
CAGAGCGCGTCGCATGAAGGCGGAAGCAGCGGGCGTGTCGCCGGTAGCGT
ACAAGGAGAGCCTGCGCGAGAGCCCGGCGGACGTGCACAAGCGAGCCCAG
CAGTTCCTCACAAGCTTGGTCTCCGACGCCGTGCGGGCGGCGGACGACGG
GACTGTCAACAGGGTGGGCGAGGGACAAAACGGCCGCCACGATTCCGCCG
CGGAAGCTGCAGCCGCCGCCGAGGCAAGGCACAGGGACGAGAACGCGAGG
CTCGCGCTCGTGGTGTCCCACGGAGGAATCCTGAACGTGATGATGCTGAC
AGTCATGGGGCTCGAGGAGAGGGCGTGCCCCCTCATGAGGAACTGCGCGG
TGGCGGTGGTGGATGTCTTCGACGACGGCCGCGGCAAGGGCCGGGTGCGC
TACGTTCCCCGAACGCTCAACGACGTGTCGCACTTCCAGGTGTCAGAGCT
ACCGGCGGTGTGCCACTCCGGCGAAAACGGTCGCCAGAACGTGGTCAAAT
CATGA