Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra87194 |
| ProteomeId | EsuBft1323_7 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 164328.Phyra87194|- |
| Length | 1270 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.39e-23 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGTTCGCTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATC
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGACAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCT
GAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACT
CGCTTGTGCGGATCATGTCCTACCTGAACTGCACGAAGGACTTCGGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCG
TGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAG
ACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGC
CTTAATCGAGAACCCGTTCAGCTCAGCGAGGAGTAAGCACATCGACGTGC
GGTTCCATTTCATTCGCGAGCTATTCAAGCTNTTGGTTTATGTGGTGGTT
TTAGCACTTGACAAATATGACCATGGTTGCCGCTTCTCGTCAGCTCAAGC
CAAGGCCGCGGCGCCAGTGATGAGGCGGGGGGAGAGTCCTCGCCGGACAC
CGGGGGTAGTAGTGAGGGCGGAGACGGCAAGTGGAAGGAGCCGGAGAGGA
GAAAGCCTGGGCCTGAGGAGGAAAGCTCTGGCAAAGGGAGAGAGGGAGCT
TCTGTGGCTGCTCATACCGAAGCACTTAGCGTCCAAGCACTCGGCCAAGA
AGGATAAGGATGACGAGTGGTGGGAATGCCCACAGGCCCTCTCGAAGAAG
GTCGAGATGACAGCACGGGTCGAGGAAGTGCAAAAGGACGGCAACCTGGA
ACTCGTCGCGAAGAAGGTCACAGTCGACATGGGGAGGAAGATGGAGGGAC
TGTCGCGGGAGGTCATCGTGGAAGAGCTGAGGACCATCTTCAGCGCTCAC
CGGACGGCATGGAAGAAGAGGCAGGAGGAGAAGAAGAGTTTCAGCGGCGA
GAGTGACGATGGTGATGACGACGGAACGGAGGTGAGGTTGCAATGCACGA
CAGGAGACACCCATGGTTAG back to topprotein sequence of EsuBft1323_7a-0001 >EsuBft1323_7 ID=EsuBft1323_7|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=396bp
MDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVD
KPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNSLVRIMSYLN
CTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAGVKEALFVRGV
LSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFK
LLVYVVVLALDKYDHGCRFSSAQAKAAAPVMRRGESPRRTPGVVVRAETA
SGRSRRGESLGLRRKALAKGERELLWLLIPKHLASKHSAKKDKDDEWWEC
PQALSKKVEMTARVEEVQKDGNLELVAKKVTVDMGRKMEGLSREVIVEEL
RTIFSAHRTAWKKRQEEKKSFSGESDDGDDDGTEVRLQCTTGDTHG back to topmRNA from alignment at Scaffold_106:9097..12084+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2988bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)
GTTGTTCGCTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATC
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGACAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCT
GAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACT
CGCTTGTGCGGATCATGTCCTACCTGAACTGCACGAAGGACTTCGGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGTGA
CCGTAGGTGGTACCGTACTGTGTGCATCCACCAAGACGCAGCCAGTGACG
GCACAGTCGACCTTGGAAGCAGAGTGTATGGCAGCCGGGAAGGGCGTGAA
GGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGA
GTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTA
ATCGAGAACCCGTTCAGCTCAGCGAGGAGTAAGCACATCGACGTGCGGTT
CCATTTCATTCGCGAGCTATTCAAGCTNTTGGTTTATGTGGTGGTTTTAG
CACTTGACAAATATGACCATGGTACGTCACGCAGGAAGCGTTGTGCCGGC
GCGTCACCCGTGGCTGGAGCCTAGAAACGCCGAGAGCGTGCTTCGGGTGT
TAGATCAGCGTGACCGGTTCAATCTGTCCTGACTTGGTCTTGTCTTGGAA
GTGCGGCCGTTGGAATCCTCCGTGATAGCGACGGTTTTCTATATTTTGGG
TGTTAGACGAGGGTTTTTGATCCGGTTGGCCGGGTTTCCCCTCGAGCCTG
TTGTTGTTTTGAGTCCCTTTGGTAGATCAGGGTATCCATGCCCCACGTTA
GGTTTGCCATGNGGGTGTGTAATCAGCGTGACCGGTTCAATCTGTCCTGC
CTTGGTCTTGTCGTTNTGTACACCTTGACGTGGTTGCATGTGCGGGGAAC
CCTCGAACTCCAAAGAGGGCTTCACTTCTCCTCACTCCCCTTGCGTGTCT
AATACAAGAGATAAAACGTCTTCCCCTTTCAAGTAAACGACATATACGAA
CAGTTCTTTCAGGTTGCCGCTTCTCGTCAGCTCAAGCCAAGGCCGCGGCG
CCAGTGATGAGGCGGGGGGAGAGTCCTCGCCGGACACCGGGGGTAGTAGT
GAGGGCGGAGACGGCAAGTGGAAGGAGCCGGAGAGGAGAAAGCCTGGGCC
TGAGGAGGAAAGCTCTGGCAAAGGTGTGTGCTCGAAGGATGTAGTCGGTG
TCGATGATTGTGCGCCCTTCTGAGAGGACTTGTGAGAGGACTGAAAACAT
GTACACATGTATTTCTGTTTTCATGCGCCCTCTGCGAAAAAGGGTGTAAG
TATTGGATCCTGTACGATATTAGGCACCTGCACTTCGTGATGTTCCCTCA
ATCATGTGCCCTTGTGGCATACGTCGTGTCCGCTTCCCAATAAGTTTGCA
ATAGGCGTGCTTGACTGATTGTTTTCTTCGAGGCGGCAACGGTTGAGATA
TGCATGCAGCAGAAAAAAAATGCAGAGAACAACCTGAAAACTTCAATTGT
TTGCAATCGTTAGCTTCGAATCGAATGCAGGATGTGGGATCCGCAATGCC
ATTTTGTACAACGAAACACAGAGCAGTGCTGTATATCGGCGGGGCGCCTC
CCGTGAAGTGAGTGGCGACCCAACCCCTTCAAGTCGTGGCTAATGTACGA
CGTCCATCACCCTAACTCTTGTTCCGCAACTCTCGTTTGCCTTGCATTCC
TGATCAGAGACAGGCCCGCGGTGGTGGACTCAGCAGGGAGAGAGGGAGCT
TCTGTGGCTGCTCATACCGAAGCACTTAGCGTCCAAGCACTCGGCCAAGA
AGGATAAGGATGACGAGTGGTGGGAATGCCCACAGGCCCTCTCGAAGAAG
GTCGAGATGACAGCACGGGTCGAGGAAGTGCAAAAGGACGGCAACCTGGA
ACTCGTCGCGAAGAAGGTCACAGTCGACATGGGGAGGAAGATGGAGGTGG
GTGGACGCTGCGGATATTTTTTTGTATTTCGGATTGCGGTTCGATCTTGA
GCTCCATCAAGCTTAACTCACCCAACTTAGTGCTTGCTTAGGATCACGTA
CGCGGCGAGTAGGATAAGTCTTCAGCATCCGAGACAATGACAAGTTGACC
CTTTTTTTGTTGACGGTACCTATGAAGCCAAATAAAGCGCTGTGGGGGGC
GGGGGTGGGTGGGCTATAAAGAAGGCCTCCGCGTCAGGAACGAATGCAAG
ATATATGAAAACGGTTGCGAAACAACCCATAACCTAACCACCTTGAAATG
TAGCTGTGTGTGATCCCGTTGTCGTCTAGTCGCACAAACGGTGCCCATTT
CACAAGGCCGCCTAACGACACTTGTTACTGTTGTTCCTGCCTATCGCCGA
AGTATTCGCACGAAAACGCTGGGTTATGAGCGATAAGAGCTCCCCTACCC
CGTGTTTCTCAGACAGTGTTTGGATAGCCGTGGCGGACATAATATGGTAA
CGATAGCATTGTCGTTCGAGAGACTCGCCCCCCTTGATTTTTCCCGTTCG
CACCGATGTCATAGGGACTGTCGCGGGAGGTCATCGTGGAAGAGCTGAGG
ACCATCTTCAGCGCTCACCGGACGGCATGGAAGAAGAGGCAGGAGGAGAA
GAAGAGTTTCAGCGGCGAGAGTGACGATGGTGATGACGACGGAACGGAGG
TGAGGTTGCAATGCACGACAGGAGACACCCATGGTTAG back to topCoding sequence (CDS) from alignment at Scaffold_106:9097..12084+ >EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1191bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)
ATGGATGTAGAAAATGGCATCACCAAGCTGTCCCAGACAGCATACATTGA
GAGTATGCTGAAGCGGTTTGATGTGACCACGACCGCTTTCACCCCTGCTG
CCACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGAC
AAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAG
GCCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCACTCAC
CCACCGGGAGGATATGGAACTCGCTTGTGCGGATCATGTCCTACCTGAAC
TGCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTT
CTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGA
GGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGA
GGAGTAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAG
CTNTTGGTTTATGTGGTGGTTTTAGCACTTGACAAATATGACCATGGTTG
CCGCTTCTCGTCAGCTCAAGCCAAGGCCGCGGCGCCAGTGATGAGGCGGG
GGGAGAGTCCTCGCCGGACACCGGGGGTAGTAGTGAGGGCGGAGACGGCA
AGTGGAAGGAGCCGGAGAGGAGAAAGCCTGGGCCTGAGGAGGAAAGCTCT
GGCAAAGGGAGAGAGGGAGCTTCTGTGGCTGCTCATACCGAAGCACTTAG
CGTCCAAGCACTCGGCCAAGAAGGATAAGGATGACGAGTGGTGGGAATGC
CCACAGGCCCTCTCGAAGAAGGTCGAGATGACAGCACGGGTCGAGGAAGT
GCAAAAGGACGGCAACCTGGAACTCGTCGCGAAGAAGGTCACAGTCGACA
TGGGGAGGAAGATGGAGGGACTGTCGCGGGAGGTCATCGTGGAAGAGCTG
AGGACCATCTTCAGCGCTCACCGGACGGCATGGAAGAAGAGGCAGGAGGA
GAAGAAGAGTTTCAGCGGCGAGAGTGACGATGGTGATGACGACGGAACGG
AGGTGAGGTTGCAATGCACGACAGGAGACACCCATGGTTAG back to top
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