Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1323_6 |
| Protein domains | IPR020837 |
| Protein domains | IPR002181 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 126 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1264bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGATTCCG
GACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGT
AACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTC
TCGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGAC
TGCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGT
GATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGT
CGGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGG
ATGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGT
CGCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAA
CGGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGAC
GCAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGG
AGACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACA
AGCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAG
CCACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCT
GAAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCG
TGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCC
CTGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTT
GGACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGC
CGTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGC
GAGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGAGTATGGCA
GACCGAAGGGCGAG back to topprotein sequence of EsuBft1323_6a-0001 >EsuBft1323_6 ID=EsuBft1323_6|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=413bp
MNGDDQRPGGITPLILGVGATAGTQDKPVICQASGMRVGDFLPRRCYLIP
DDEGFTHLRADRLGRAVTFVAALRQGEKPLPLALVRAFSPSKDCLCQRPD
CFLATFAEERKAEFRQCSKCKYRKSDRSRARWYPMDAAGDHVAEGNAMVR
DGDWWWGRCYQSWLNGMKRDDKPTEQPANRPCKSGEEAPTLLEPLSTVRR
MVDDVLGRGDILCWQDVARWLAAERAKVGMEEITGKYTRQLVLDLFTGMD
ADPGSKSRLVRANGAQGDARERELFLSPNTLGDKHLVDLMLRARHSAPAQ
PPSNQLADKGGSLESILKEVEKDTEDADARMSVVRAAGRIVRADVESDPA
LKNATGTREEYRYADELDMKVKPPRETLLSAFPPSLVGLYQSMTDMALYR
EIIASETEHPGEP back to topmRNA from alignment at Scaffold_106:28755..30167+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1413bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGTAGGCC
AACCAACAGGCAAGAAGCGAAAAAAGGCGTGCGGCCTTCAGGAATGCGGT
TGGGTTACACACCACCCTGGCACCGAGTGTAGCACATGCCCCGGGAGTGT
AGTGCACTCGGTCGACGAGAGACCATGTTCGGCATGCCACAGGATTCCGG
ACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGTA
ACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTCT
CGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGACT
GCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATGC
AGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATCC
CATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGTG
ATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCATG
AAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGTC
GGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGGA
TGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGTC
GCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAAC
GGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGACG
CAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGGA
GACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACAA
GCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAGC
CACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCTG
AAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCGT
GCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCCC
TGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTTG
GACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGCC
GTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGCG
AGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGAGTATGGCAG
ACCGAAGGGCGAG back to topCoding sequence (CDS) from alignment at Scaffold_106:28755..30167+ >EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1242bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGATTCCG
GACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGT
AACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTC
TCGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGAC
TGCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGT
GATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGT
CGGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGG
ATGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGT
CGCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAA
CGGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGAC
GCAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGG
AGACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACA
AGCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAG
CCACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCT
GAAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCG
TGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCC
CTGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTT
GGACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGC
CGTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGC
GAGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGA back to top
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