EsuBft1323_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1323_3a-0001
Unique NameEsuBft1323_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:38522..40303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1323_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length135
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_3aEsuBft1323_3aEctocarpus subulatus male Bft15bgeneScaffold_106 38522..40303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_3a-0001EsuBft1323_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 40028..40303 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_3a-0001-exonagat-exon-50617Ectocarpus subulatus male Bft15bexonScaffold_106 38522..38736 -
EsuBft1323_3a-0001-exonagat-exon-50615Ectocarpus subulatus male Bft15bexonScaffold_106 38948..39827 -
EsuBft1323_3a-0001-exonagat-exon-50616Ectocarpus subulatus male Bft15bexonScaffold_106 39927..40114 -
EsuBft1323_3a-0001-exonEsuBft1323_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 40232..40303 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_3a-0001-exonagat-three_prime_utr-2987Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 38522..38736 -
EsuBft1323_3a-0001-exonagat-three_prime_utr-2988Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 38948..39827 -
EsuBft1323_3a-0001-exonagat-three_prime_utr-2989Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 39927..40027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_3a-0001-cdsEsuBft1323_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 40028..40114 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1323_3a-0001 ID=EsuBft1323_3a-0001|Name=EsuBft1323_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1355bp|location=Sequence derived from alignment at Scaffold_106:38522..40303- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTTCTCGAACCTAAAAAGCTCCTTGAAGTCGAAGCCTCCGATAG
CGTCGAAGATGTTGTACATCGGGGCCAGAGCCATGATCTGCATGCATTCA
TCATACCGCTCATAGCGGATTCTACCTCGTTCAAGGCGCGCCATTCCCTC
GGTTCGTAGCGTTTACGGGGTGGAGGCTCCGAGGCTCAGCCGTTAGGTTT
TCGGTCTTGCGCTGAGTGTTTTTTTAAAATCGAGATTTCGCCGCTGCTGA
GCTCCGAAAGGAACCCTAAAATGCATAAACGAAACGATACATTTTCGAAA
AGCTCTTGACAAGACGGTTTCAACGCCGCCGTTTTTGGCGCTGTGACTGT
TCCGGCAGTTGAGAAATCGAGCGTCGAAAATCGGTCAAGGGGGTGTGTTA
TCTTGTGTCATATACGGTACATCTGAAAATGTACATGTCTACATGTTGGA
GCGCTCTAGGACACGAGCTACATGCACGAGACTGTTCCGATGTGTACAGA
ATCCTCACATGAAAGACATGCTCCTGCTATGTATACGTGTTGGGGCTAGA
GCCAGACAGCCAGCTTCAGGCAACATACACTCATCGTGGGTGGTACTCTC
GCGACTCACTTGATTCCGTAGACGCTTCGTTATGACCGCGCCTCCCGAGC
TCCTCTCGGCTGCCTTGGCAAAGTCGACCGCCCCGATACAGCGAGAGTGA
TGGTACCCGCAGAGACCGGGGTGCTGCTGCGCCGCGGTCTTCCTTTCCGC
AAGGTTGTTGATCTCGGGTAGGGGCTGCGGCTCTGCTGCTCCGTGTTGAC
GGTAGCGCTGTCCTACCGCCCGGGCTGCAGCCGTGGCGTCGGGAAGTTGG
TCTGGCGTAGAGTTTGCGATCACCAGCAGCTCATCCCAGACAACACGTGG
AGCCGTTTCGGGATGCCATTGGTCTGCTATGTGCTGCCAAAACTGAGCAA
CTTCCTCTCGGTCCATGATGATGGTAGTGATTGGGTTACTTCTGCTGCTG
CTGCTGTTGTGCCTAAAGGTAGAGAGGTAGGAGCGGCAAGGAGACTATCG
TCCCGGGCCACTTTTCGCTCACAATAGCAAGAGTGTTCGGGACTTCAGCT
CCGATCACATCTCCGATCGTCCCGCTTTATCTGTAGTGTTTTTATTCTAT
TTGACCCGATATTTGTTATTTTGGGATTCGTACACACAGCAGTTGGATTT
AGACTTTTCTTCGTTTTGTGCCCAAGTTATCGCTAGCGCACAGGAGTAAG
GGTCCACCTTGCGATGCCTCTCGACGGATCCCCTCTACGTGTGCGTCTCG
GCTTCTCTTTTTCACCGAATGTCATACCACGAGGCCTGCTGCTACTGCTA
CTGCT
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protein sequence of EsuBft1323_3a-0001

>EsuBft1323_3 ID=EsuBft1323_3|Name=EsuBft1323_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MRLLEPKKLLEVEASDSVEDVVHRGQSHDLHAFIIPLIADSTSFKARHSL
GS
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mRNA from alignment at Scaffold_106:38522..40303-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1323_3a-0001 ID=EsuBft1323_3a-0001|Name=EsuBft1323_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1782bp|location=Sequence derived from alignment at Scaffold_106:38522..40303- (Ectocarpus subulatus male Bft15b)
ATGAGGCTTCTCGAACCTAAAAAGCTCCTTGAAGTCGAAGCCTCCGATAG
CGTCGAAGATGTTGTACATCGGGTACACACCCTGCAGGGTTGTAGGCGCT
ACTAGCTCTTGGTAGGCCTCCAGTTTGACAAGACCAAACATGGTCATCAC
GAGAAACAAGTCCTCCTCTCCGGCCAATGCGCAGAGCAGGGCCAGAGCCA
TGATCTGCATGCATTCATCATACCGCTCATAGCGGATTCTACCTCGTTCA
AGGCGCGCCATTCCCTCGGTTCGTAGCGTTTACGGGGTGGAGGCTCCGAG
GCTCAGCCGTTAGGTTTTCGGTCTTGCGCTGAGTGTTTTTTTAAAATCGA
GATTTCGCCGCTGCTGAGCTCCGAAAGGTAACAAGCGGCGAAATAAGTTC
GTGTCAAAATATCAACCGTCACTTTTTTTTGACCCGAGCTGCCTTGTGTC
AATATTCTCGGGTCAAAAAAAGGTAGGAACCCTAAAATGCATAAACGAAA
CGATACATTTTCGAAAAGCTCTTGACAAGACGGTTTCAACGCCGCCGTTT
TTGGCGCTGTGACTGTTCCGGCAGTTGAGAAATCGAGCGTCGAAAATCGG
TCAAGGGGGTGTGTTATCTTGTGTCATATACGGTACATCTGAAAATGTAC
ATGTCTACATGTTGGAGCGCTCTAGGACACGAGCTACATGCACGAGACTG
TTCCGATGTGTACAGAATCCTCACATGAAAGACATGCTCCTGCTATGTAT
ACGTGTTGGGGCTAGAGCCAGACAGCCAGCTTCAGGCAACATACACTCAT
CGTGGGTGGTACTCTCGCGACTCACTTGATTCCGTAGACGCTTCGTTATG
ACCGCGCCTCCCGAGCTCCTCTCGGCTGCCTTGGCAAAGTCGACCGCCCC
GATACAGCGAGAGTGATGGTACCCGCAGAGACCGGGGTGCTGCTGCGCCG
CGGTCTTCCTTTCCGCAAGGTTGTTGATCTCGGGTAGGGGCTGCGGCTCT
GCTGCTCCGTGTTGACGGTAGCGCTGTCCTACCGCCCGGGCTGCAGCCGT
GGCGTCGGGAAGTTGGTCTGGCGTAGAGTTTGCGATCACCAGCAGCTCAT
CCCAGACAACACGTGGAGCCGTTTCGGGATGCCATTGGTCTGCTATGTGC
TGCCAAAACTGAGCAACTTCCTCTCGGTCCATGATGATGGTAGTGATTGG
GTTACTTCTGCTGCTGCTGCTGTTGTGCCTAAAGGTAGAGAGGTAGGAGC
GGCAAGGAGACTATCGTCCCGGGCCACTTTTCGCTCACAATAGCAAGAGT
GTTCGGGACTTCAGCTCCGATCACATCTCCGATCGTCCCGCTTTATCTGT
AGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTCTTCACATTAAACCGTATGTCAGGTGATAAATGCC
AAAATCTAGCAAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCA
TCTACCATTGCTCCATGCGGCGCCGCTGTAGTCAGCCCGAGTGTAGAAAT
AGATAATTTTGCACGAGTTTATTCTATTTGACCCGATATTTGTTATTTTG
GGATTCGTACACACAGCAGTTGGATTTAGACTTTTCTTCGTTTTGTGCCC
AAGTTATCGCTAGCGCACAGGAGTAAGGGTCCACCTTGCGATGCCTCTCG
ACGGATCCCCTCTACGTGTGCGTCTCGGCTTCTCTTTTTCACCGAATGTC
ATACCACGAGGCCTGCTGCTACTGCTACTGCT
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Coding sequence (CDS) from alignment at Scaffold_106:38522..40303-

>EsuBft1323_3a-0001 ID=EsuBft1323_3a-0001|Name=EsuBft1323_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_106:38522..40303- (Ectocarpus subulatus male Bft15b)
ATGAGGCTTCTCGAACCTAAAAAGCTCCTTGAAGTCGAAGCCTCCGATAG
CGTCGAAGATGTTGTACATCGGGGCCAGAGCCATGATCTGCATGCATTCA
TCATACCGCTCATAGCGGATTCTACCTCGTTCAAGGCGCGCCATTCCCTC
GGTTCGTAG
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