EsuBft1323_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1323_2a-0001
Unique Name	EsuBft1323_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:41868..43226 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1323_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	135
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Secreted hypothetical protein
Ec32 ortholog	Ec-22_000675.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_2a	EsuBft1323_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 41868..43226 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_2a-0001-exon	EsuBft1323_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 41868..43226 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_2a-0001-exon	agat-three_prime_utr-2986	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 41868..42491 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_2a-0001-cds	EsuBft1323_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 42492..43226 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_2a-0001	EsuBft1323_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 42492..43226 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:41868..43226-
coding sequence from alignment at Scaffold_106:41868..43226-

spliced messenger RNA

>EsuBft1323_2a-0001 ID=EsuBft1323_2a-0001|Name=EsuBft1323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1359bp|location=Sequence derived from alignment at Scaffold_106:41868..43226- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCAAGTTTGAGCAGACGTTCACCAACATTTTCGTGATGTTCAA
AAAGTACGTGTCCCTCTTGGAGGATCAGGCCAACAAGAGAATCAAGGGAG
GAGGCCTAGAGCTTGAGGTGGTGGAGAAGTTGGATAGGGTGTTGGTCGAA
CTGGGCAGGTTGGCCAAGATGGAGAGGGCGGTCTGGGACGAAATGTTGTC
GACGGAGCTCATGGCGAGGTGCAATGTTGGTAGACCGAACAAGGGGGGGA
GACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGGGAGCATTTCG
GTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGAGTAAGACATC
GAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAGGCAGGGGACC
GNCTGATGTCGACGGAGCTCATGGCCAGGTGCAATGTTGGAAGACCGAAC
AAGGGGGGGAGACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGG
GAGCATTTCGGTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGA
GTAAGACATCGAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAG
GCAGGGGACCGGGGTGTTTTGATGTGTCAGGCATGCTTCAAAAACCCTGT
GAGGCACGCTAGGGCTGGAGATGCTCAACGGAACCCCCAGAAGTACGGGG
TGGTGGGACGCAAGGACCTCGTCTGGTGGTCGTGAGCGCATATTTTTTTG
GCCTAATGTTTTACGTTGAATGTGACATGTGTTCCTGGCGGAGGAGACGC
CGATGTGTTTCGAGGGTGCTCCGTTGTGATTTGCCTGGGGGTCAAACTGA
TCTTACAAGTGCATAGTAGTGTCGTTCATCAACCATCTTCCCTTCCGCGA
GGGAGTTGTTGTGCCTTTATCGTCCACTTGTGTTTTCTTGAAAACAACCG
TGGACGAGTGATAGTTTTTGTGCCTTCGTCGTTTACCTGTGTTGCTGATA
ACAGCAGTGGTATAGCTTTTTTCAATTTTATTTGATCTTGTCTCCGATTT
TCTATAAGTTCAGAAAAAGGCGTATTATTTTTCTCCGGCTCGAACGCAGC
ATTCATACAAATACGCTCAGAAACAATAGCTTTTTCGACTGCGAGTCTTA
AATTCAGGTAATCTTTTTGATAAATTTTTCCCACTGAAATAAGCTCACAT
CATACACCCTCAAATATCACGACAGGACGACATCCGAAATGGCCGCTGGC
ACGGGTTCATCCCCCGGCCACACCGCGCGGCACGCCTGCGTGAAGCAGTC
ACTCCTCGTGATCTGCATGCCACGACCCCTTGCATTCATCTGAATGCTCG
TGTCGAACG

protein sequence of EsuBft1323_2a-0001

>EsuBft1323_2 ID=EsuBft1323_2|Name=EsuBft1323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=244bp
MEGKFEQTFTNIFVMFKKYVSLLEDQANKRIKGGGLELEVVEKLDRVLVE
LGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAVTGAPDKVWGSIS
VKTQRKCMHPGCKSKTSKGCACAELCVGKQAGDRLMSTELMARCNVGRPN
KGGRPAAVTGAPDKVWGSISVKTQRKCMHPGCKSKTSKGCACAELCVGKQ
AGDRGVLMCQACFKNPVRHARAGDAQRNPQKYGVVGRKDLVWWS

mRNA from alignment at Scaffold_106:41868..43226-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1323_2a-0001 ID=EsuBft1323_2a-0001|Name=EsuBft1323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1359bp|location=Sequence derived from alignment at Scaffold_106:41868..43226- (Ectocarpus subulatus male Bft15b)
ATGGAGGGCAAGTTTGAGCAGACGTTCACCAACATTTTCGTGATGTTCAA
AAAGTACGTGTCCCTCTTGGAGGATCAGGCCAACAAGAGAATCAAGGGAG
GAGGCCTAGAGCTTGAGGTGGTGGAGAAGTTGGATAGGGTGTTGGTCGAA
CTGGGCAGGTTGGCCAAGATGGAGAGGGCGGTCTGGGACGAAATGTTGTC
GACGGAGCTCATGGCGAGGTGCAATGTTGGTAGACCGAACAAGGGGGGGA
GACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGGGAGCATTTCG
GTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGAGTAAGACATC
GAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAGGCAGGGGACC
GNCTGATGTCGACGGAGCTCATGGCCAGGTGCAATGTTGGAAGACCGAAC
AAGGGGGGGAGACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGG
GAGCATTTCGGTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGA
GTAAGACATCGAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAG
GCAGGGGACCGGGGTGTTTTGATGTGTCAGGCATGCTTCAAAAACCCTGT
GAGGCACGCTAGGGCTGGAGATGCTCAACGGAACCCCCAGAAGTACGGGG
TGGTGGGACGCAAGGACCTCGTCTGGTGGTCGTGAGCGCATATTTTTTTG
GCCTAATGTTTTACGTTGAATGTGACATGTGTTCCTGGCGGAGGAGACGC
CGATGTGTTTCGAGGGTGCTCCGTTGTGATTTGCCTGGGGGTCAAACTGA
TCTTACAAGTGCATAGTAGTGTCGTTCATCAACCATCTTCCCTTCCGCGA
GGGAGTTGTTGTGCCTTTATCGTCCACTTGTGTTTTCTTGAAAACAACCG
TGGACGAGTGATAGTTTTTGTGCCTTCGTCGTTTACCTGTGTTGCTGATA
ACAGCAGTGGTATAGCTTTTTTCAATTTTATTTGATCTTGTCTCCGATTT
TCTATAAGTTCAGAAAAAGGCGTATTATTTTTCTCCGGCTCGAACGCAGC
ATTCATACAAATACGCTCAGAAACAATAGCTTTTTCGACTGCGAGTCTTA
AATTCAGGTAATCTTTTTGATAAATTTTTCCCACTGAAATAAGCTCACAT
CATACACCCTCAAATATCACGACAGGACGACATCCGAAATGGCCGCTGGC
ACGGGTTCATCCCCCGGCCACACCGCGCGGCACGCCTGCGTGAAGCAGTC
ACTCCTCGTGATCTGCATGCCACGACCCCTTGCATTCATCTGAATGCTCG
TGTCGAACG

Coding sequence (CDS) from alignment at Scaffold_106:41868..43226-

>EsuBft1323_2a-0001 ID=EsuBft1323_2a-0001|Name=EsuBft1323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=735bp|location=Sequence derived from alignment at Scaffold_106:41868..43226- (Ectocarpus subulatus male Bft15b)
ATGGAGGGCAAGTTTGAGCAGACGTTCACCAACATTTTCGTGATGTTCAA
AAAGTACGTGTCCCTCTTGGAGGATCAGGCCAACAAGAGAATCAAGGGAG
GAGGCCTAGAGCTTGAGGTGGTGGAGAAGTTGGATAGGGTGTTGGTCGAA
CTGGGCAGGTTGGCCAAGATGGAGAGGGCGGTCTGGGACGAAATGTTGTC
GACGGAGCTCATGGCGAGGTGCAATGTTGGTAGACCGAACAAGGGGGGGA
GACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGGGAGCATTTCG
GTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGAGTAAGACATC
GAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAGGCAGGGGACC
GNCTGATGTCGACGGAGCTCATGGCCAGGTGCAATGTTGGAAGACCGAAC
AAGGGGGGGAGACCGGCGGCGGTGACGGGTGCCCCGGACAAAGTGTGGGG
GAGCATTTCGGTGAAGACTCAACGCAAATGCATGCACCCCGGATGCAAGA
GTAAGACATCGAAAGGATGTGCCTGCGCGGAGCTTTGTGTTGGCAAACAG
GCAGGGGACCGGGGTGTTTTGATGTGTCAGGCATGCTTCAAAAACCCTGT
GAGGCACGCTAGGGCTGGAGATGCTCAACGGAACCCCCAGAAGTACGGGG
TGGTGGGACGCAAGGACCTCGTCTGGTGGTCGTGA