EsuBft1323_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1323_11a-0001
Unique NameEsuBft1323_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:153..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog90675.XP_010506885.1
ProteomeIdEsuBft1323_11
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length515
Hectar predicted targeting categoryother localisation
Evalue3.38e-12
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K00477
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
COG categoryI
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_11aEsuBft1323_11aEctocarpus subulatus male Bft15bgeneScaffold_106 153..667 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_11a-0001-exonEsuBft1323_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 153..667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_11a-0001-cdsEsuBft1323_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 153..422 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_11a-0001-exonagat-three_prime_utr-2985Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 423..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_11a-0001EsuBft1323_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 153..422 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=515bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAGATTTGGATTTATTTGTGTGTGATCAAACAA
CTAGGGGAGGAGCATTGTTTTTCATTTTTGCCGATGGTCTTCTCAATGAA
TGGTGCTCTAGGATGGGGGGCAATTGGATCGCTATGATTATCGAAGAACT
ACAACTGGAATGATCGGGGATGGAAAAATATTTCAAGCGCAGAAGGCTAA
TGTTGCAGATTTGAGTTGTGTTTTGGATTATTTTCTTGTGTTTTGGAGTT
ACTGAAAGATCATGA
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protein sequence of EsuBft1323_11a-0001

>EsuBft1323_11 ID=EsuBft1323_11|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MLPEAGMPCIPVFEDNQAAIQLAQVPISNSNSKHIDVRHHIIRELAGRKE
ISIFHVESAIQHADFLTKALHVGEFEFQRYFVLSLGQER
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mRNA from alignment at Scaffold_106:153..667+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=515bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAGATTTGGATTTATTTGTGTGTGATCAAACAA
CTAGGGGAGGAGCATTGTTTTTCATTTTTGCCGATGGTCTTCTCAATGAA
TGGTGCTCTAGGATGGGGGGCAATTGGATCGCTATGATTATCGAAGAACT
ACAACTGGAATGATCGGGGATGGAAAAATATTTCAAGCGCAGAAGGCTAA
TGTTGCAGATTTGAGTTGTGTTTTGGATTATTTTCTTGTGTTTTGGAGTT
ACTGAAAGATCATGA
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Coding sequence (CDS) from alignment at Scaffold_106:153..667+

>EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAG
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