EsuBft1319_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1319_3a-0001
Unique Name	EsuBft1319_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:29662..31120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1319_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	145
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a	EsuBft1319_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 29662..31120 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a-0001-exon	EsuBft1319_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 29662..31120 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a-0001-exon	agat-five_prime_utr-1942	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 29662..29683 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a-0001-cds	EsuBft1319_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 29684..29863 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a-0001-exon	agat-three_prime_utr-2948	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 29864..31120 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1319_3a-0001	EsuBft1319_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 29684..29863 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:29662..31120+
coding sequence from alignment at Scaffold_358:29662..31120+

spliced messenger RNA

>EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGGGCATTCTTGAGATCTGGATGCTGATCGACATCGGCCCGAAAAGTT
TCCGCCGCCGCACGCACGATCTCCATCCTCGCGTCAGCCTCTTTCGCTTC
TTCGAGAAGACGCCTCACTATCTGCAGGGACGTATTTCCACCGGACGTGG
CGTTTGTGGGCGTGCTCGGACCATCGAACGTGTTCGCCAGGCGCGCCCGT
AGGGCGAGGGATGCGATAACCTCGTCCCGAGCGTTGACCGGGAAGAGACA
CAATAGTCGTTGGCGCCCGTCTCCAAAGCCCCCCTCGCTGCTGACCACTC
GCGCTTGGCTCCCATCAGCGCTCGCGATGCTCTCGAACATCTGGCGCACG
GCCTTCCGCCCGCTCCTACGCTCAAGTTCTTGGTCACCATCCTTTGCGCG
CTCAGCTGAGAGCCAGTCGAACACATCCTCCCAGTAAACGATGTCCCCAT
GAGCTACGGCTTTATCACCAACGCGCGCACCCGGCTGAACGGCTTCTCCG
GCGCCGGTTCATCGGCTTGAGGTCGGCCCTAGTTGCTCGATGTCGCAACC
TTTTTTTGAGTAGCTTCTCCGATAGCCCGGATTCGAGCTTGATTGCAGGC
CTGGCAGTACCAAGCTTGTGTGCGTCCTGATCCACCACCCTCCGTTATGT
TATCGTCCACGACGTCCACACTGTACCACCTCTTCTGGTCTTTCACAGGG
TACCCTCTCTTGCACACGCTACATGTTCGGAGCTCCGACTTTGCTTCCCT
CTCGAGAAGAAAATCGTAGAAAAAATCTCGGCGTTGGCACATGCAGTCGT
TGCTGGGACAAAGTCCTCGCACGAGAGGTAGAGGCAGCTCCCCCTCTCCT
TCTTGGTACTCGGCCAAAAACAACCGTGTCGCTCGTTCAAGCCGTGGCCC
TCTGAGGTGCGTGAAGCCAACGAAGTCCTCCGACCTATGGCATGCGGAGC
ATAGCTTGTCACTGACGGCGTGCACTACGCCTGAGGGGCACATGCTGCAT
TCGAGACCCGGGTTGTTTGTGAACCAACCGCACTACGCACGCCTACAAGG
TTTCTTGCGTGTTTTTTTCTCGGCTCCGATCTGAGTATTCCTAACTCCAG
GATCAGACTGTCTTCGCGCTGTACCCCGCTTGACGGAGTGAGAGCCAGCT
GTTCCAAGTTTTCCACCGCAACTTCGACGCCGGAATTCAACTGTCCGCTT
GCCTCCAGACTCCAACTTCTCACGTTCAGCTTCGGCAATCTCTCGCTCTC
TCCGGACCTTCGCATGTTGCCTCGCCTCCTTTTGCTGCTCACTGTACTCC
TCGTCTGCCATCCTCCCCTCAAAGACGGCTTGCCGCCTCTGCCCCAGCGT
CCGTCTCTTTCTGCGTTTCCTACCGGATCCTGTACGGCTTCCCGGATCTC
GGCCACGCGCGCCGGATCCCGCCACTCGCTTAGTTGCGACGCCAGGCGTA
CTTGCGGGT

protein sequence of EsuBft1319_3a-0001

>EsuBft1319_3 ID=EsuBft1319_3|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MLIDIGPKSFRRRTHDLHPRVSLFRFFEKTPHYLQGRISTGRGVCGRART
IERVRQARP

mRNA from alignment at Scaffold_358:29662..31120+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)
TGCGGGCATTCTTGAGATCTGGATGCTGATCGACATCGGCCCGAAAAGTT
TCCGCCGCCGCACGCACGATCTCCATCCTCGCGTCAGCCTCTTTCGCTTC
TTCGAGAAGACGCCTCACTATCTGCAGGGACGTATTTCCACCGGACGTGG
CGTTTGTGGGCGTGCTCGGACCATCGAACGTGTTCGCCAGGCGCGCCCGT
AGGGCGAGGGATGCGATAACCTCGTCCCGAGCGTTGACCGGGAAGAGACA
CAATAGTCGTTGGCGCCCGTCTCCAAAGCCCCCCTCGCTGCTGACCACTC
GCGCTTGGCTCCCATCAGCGCTCGCGATGCTCTCGAACATCTGGCGCACG
GCCTTCCGCCCGCTCCTACGCTCAAGTTCTTGGTCACCATCCTTTGCGCG
CTCAGCTGAGAGCCAGTCGAACACATCCTCCCAGTAAACGATGTCCCCAT
GAGCTACGGCTTTATCACCAACGCGCGCACCCGGCTGAACGGCTTCTCCG
GCGCCGGTTCATCGGCTTGAGGTCGGCCCTAGTTGCTCGATGTCGCAACC
TTTTTTTGAGTAGCTTCTCCGATAGCCCGGATTCGAGCTTGATTGCAGGC
CTGGCAGTACCAAGCTTGTGTGCGTCCTGATCCACCACCCTCCGTTATGT
TATCGTCCACGACGTCCACACTGTACCACCTCTTCTGGTCTTTCACAGGG
TACCCTCTCTTGCACACGCTACATGTTCGGAGCTCCGACTTTGCTTCCCT
CTCGAGAAGAAAATCGTAGAAAAAATCTCGGCGTTGGCACATGCAGTCGT
TGCTGGGACAAAGTCCTCGCACGAGAGGTAGAGGCAGCTCCCCCTCTCCT
TCTTGGTACTCGGCCAAAAACAACCGTGTCGCTCGTTCAAGCCGTGGCCC
TCTGAGGTGCGTGAAGCCAACGAAGTCCTCCGACCTATGGCATGCGGAGC
ATAGCTTGTCACTGACGGCGTGCACTACGCCTGAGGGGCACATGCTGCAT
TCGAGACCCGGGTTGTTTGTGAACCAACCGCACTACGCACGCCTACAAGG
TTTCTTGCGTGTTTTTTTCTCGGCTCCGATCTGAGTATTCCTAACTCCAG
GATCAGACTGTCTTCGCGCTGTACCCCGCTTGACGGAGTGAGAGCCAGCT
GTTCCAAGTTTTCCACCGCAACTTCGACGCCGGAATTCAACTGTCCGCTT
GCCTCCAGACTCCAACTTCTCACGTTCAGCTTCGGCAATCTCTCGCTCTC
TCCGGACCTTCGCATGTTGCCTCGCCTCCTTTTGCTGCTCACTGTACTCC
TCGTCTGCCATCCTCCCCTCAAAGACGGCTTGCCGCCTCTGCCCCAGCGT
CCGTCTCTTTCTGCGTTTCCTACCGGATCCTGTACGGCTTCCCGGATCTC
GGCCACGCGCGCCGGATCCCGCCACTCGCTTAGTTGCGACGCCAGGCGTA
CTTGCGGGT

Coding sequence (CDS) from alignment at Scaffold_358:29662..31120+

>EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)
ATGCTGATCGACATCGGCCCGAAAAGTTTCCGCCGCCGCACGCACGATCT
CCATCCTCGCGTCAGCCTCTTTCGCTTCTTCGAGAAGACGCCTCACTATC
TGCAGGGACGTATTTCCACCGGACGTGGCGTTTGTGGGCGTGCTCGGACC
ATCGAACGTGTTCGCCAGGCGCGCCCGTAG