Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1319_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 145 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCGGGCATTCTTGAGATCTGGATGCTGATCGACATCGGCCCGAAAAGTT
TCCGCCGCCGCACGCACGATCTCCATCCTCGCGTCAGCCTCTTTCGCTTC
TTCGAGAAGACGCCTCACTATCTGCAGGGACGTATTTCCACCGGACGTGG
CGTTTGTGGGCGTGCTCGGACCATCGAACGTGTTCGCCAGGCGCGCCCGT
AGGGCGAGGGATGCGATAACCTCGTCCCGAGCGTTGACCGGGAAGAGACA
CAATAGTCGTTGGCGCCCGTCTCCAAAGCCCCCCTCGCTGCTGACCACTC
GCGCTTGGCTCCCATCAGCGCTCGCGATGCTCTCGAACATCTGGCGCACG
GCCTTCCGCCCGCTCCTACGCTCAAGTTCTTGGTCACCATCCTTTGCGCG
CTCAGCTGAGAGCCAGTCGAACACATCCTCCCAGTAAACGATGTCCCCAT
GAGCTACGGCTTTATCACCAACGCGCGCACCCGGCTGAACGGCTTCTCCG
GCGCCGGTTCATCGGCTTGAGGTCGGCCCTAGTTGCTCGATGTCGCAACC
TTTTTTTGAGTAGCTTCTCCGATAGCCCGGATTCGAGCTTGATTGCAGGC
CTGGCAGTACCAAGCTTGTGTGCGTCCTGATCCACCACCCTCCGTTATGT
TATCGTCCACGACGTCCACACTGTACCACCTCTTCTGGTCTTTCACAGGG
TACCCTCTCTTGCACACGCTACATGTTCGGAGCTCCGACTTTGCTTCCCT
CTCGAGAAGAAAATCGTAGAAAAAATCTCGGCGTTGGCACATGCAGTCGT
TGCTGGGACAAAGTCCTCGCACGAGAGGTAGAGGCAGCTCCCCCTCTCCT
TCTTGGTACTCGGCCAAAAACAACCGTGTCGCTCGTTCAAGCCGTGGCCC
TCTGAGGTGCGTGAAGCCAACGAAGTCCTCCGACCTATGGCATGCGGAGC
ATAGCTTGTCACTGACGGCGTGCACTACGCCTGAGGGGCACATGCTGCAT
TCGAGACCCGGGTTGTTTGTGAACCAACCGCACTACGCACGCCTACAAGG
TTTCTTGCGTGTTTTTTTCTCGGCTCCGATCTGAGTATTCCTAACTCCAG
GATCAGACTGTCTTCGCGCTGTACCCCGCTTGACGGAGTGAGAGCCAGCT
GTTCCAAGTTTTCCACCGCAACTTCGACGCCGGAATTCAACTGTCCGCTT
GCCTCCAGACTCCAACTTCTCACGTTCAGCTTCGGCAATCTCTCGCTCTC
TCCGGACCTTCGCATGTTGCCTCGCCTCCTTTTGCTGCTCACTGTACTCC
TCGTCTGCCATCCTCCCCTCAAAGACGGCTTGCCGCCTCTGCCCCAGCGT
CCGTCTCTTTCTGCGTTTCCTACCGGATCCTGTACGGCTTCCCGGATCTC
GGCCACGCGCGCCGGATCCCGCCACTCGCTTAGTTGCGACGCCAGGCGTA
CTTGCGGGT back to topprotein sequence of EsuBft1319_3a-0001 >EsuBft1319_3 ID=EsuBft1319_3|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MLIDIGPKSFRRRTHDLHPRVSLFRFFEKTPHYLQGRISTGRGVCGRART
IERVRQARP back to topmRNA from alignment at Scaffold_358:29662..31120+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)
TGCGGGCATTCTTGAGATCTGGATGCTGATCGACATCGGCCCGAAAAGTT
TCCGCCGCCGCACGCACGATCTCCATCCTCGCGTCAGCCTCTTTCGCTTC
TTCGAGAAGACGCCTCACTATCTGCAGGGACGTATTTCCACCGGACGTGG
CGTTTGTGGGCGTGCTCGGACCATCGAACGTGTTCGCCAGGCGCGCCCGT
AGGGCGAGGGATGCGATAACCTCGTCCCGAGCGTTGACCGGGAAGAGACA
CAATAGTCGTTGGCGCCCGTCTCCAAAGCCCCCCTCGCTGCTGACCACTC
GCGCTTGGCTCCCATCAGCGCTCGCGATGCTCTCGAACATCTGGCGCACG
GCCTTCCGCCCGCTCCTACGCTCAAGTTCTTGGTCACCATCCTTTGCGCG
CTCAGCTGAGAGCCAGTCGAACACATCCTCCCAGTAAACGATGTCCCCAT
GAGCTACGGCTTTATCACCAACGCGCGCACCCGGCTGAACGGCTTCTCCG
GCGCCGGTTCATCGGCTTGAGGTCGGCCCTAGTTGCTCGATGTCGCAACC
TTTTTTTGAGTAGCTTCTCCGATAGCCCGGATTCGAGCTTGATTGCAGGC
CTGGCAGTACCAAGCTTGTGTGCGTCCTGATCCACCACCCTCCGTTATGT
TATCGTCCACGACGTCCACACTGTACCACCTCTTCTGGTCTTTCACAGGG
TACCCTCTCTTGCACACGCTACATGTTCGGAGCTCCGACTTTGCTTCCCT
CTCGAGAAGAAAATCGTAGAAAAAATCTCGGCGTTGGCACATGCAGTCGT
TGCTGGGACAAAGTCCTCGCACGAGAGGTAGAGGCAGCTCCCCCTCTCCT
TCTTGGTACTCGGCCAAAAACAACCGTGTCGCTCGTTCAAGCCGTGGCCC
TCTGAGGTGCGTGAAGCCAACGAAGTCCTCCGACCTATGGCATGCGGAGC
ATAGCTTGTCACTGACGGCGTGCACTACGCCTGAGGGGCACATGCTGCAT
TCGAGACCCGGGTTGTTTGTGAACCAACCGCACTACGCACGCCTACAAGG
TTTCTTGCGTGTTTTTTTCTCGGCTCCGATCTGAGTATTCCTAACTCCAG
GATCAGACTGTCTTCGCGCTGTACCCCGCTTGACGGAGTGAGAGCCAGCT
GTTCCAAGTTTTCCACCGCAACTTCGACGCCGGAATTCAACTGTCCGCTT
GCCTCCAGACTCCAACTTCTCACGTTCAGCTTCGGCAATCTCTCGCTCTC
TCCGGACCTTCGCATGTTGCCTCGCCTCCTTTTGCTGCTCACTGTACTCC
TCGTCTGCCATCCTCCCCTCAAAGACGGCTTGCCGCCTCTGCCCCAGCGT
CCGTCTCTTTCTGCGTTTCCTACCGGATCCTGTACGGCTTCCCGGATCTC
GGCCACGCGCGCCGGATCCCGCCACTCGCTTAGTTGCGACGCCAGGCGTA
CTTGCGGGT back to topCoding sequence (CDS) from alignment at Scaffold_358:29662..31120+ >EsuBft1319_3a-0001 ID=EsuBft1319_3a-0001|Name=EsuBft1319_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_358:29662..31120+ (Ectocarpus subulatus male Bft15b)
ATGCTGATCGACATCGGCCCGAAAAGTTTCCGCCGCCGCACGCACGATCT
CCATCCTCGCGTCAGCCTCTTTCGCTTCTTCGAGAAGACGCCTCACTATC
TGCAGGGACGTATTTCCACCGGACGTGGCGTTTGTGGGCGTGCTCGGACC
ATCGAACGTGTTCGCCAGGCGCGCCCGTAG back to top
|