EsuBft1311_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1311_9a-0001
Unique NameEsuBft1311_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:164852..165573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1311_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length72
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_9aEsuBft1311_9aEctocarpus subulatus male Bft15bgeneScaffold_589 164852..165573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_9a-0001-exonEsuBft1311_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 164852..165573 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_9a-0001-exonagat-three_prime_utr-2907Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 164852..165345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_9a-0001-cdsEsuBft1311_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 165346..165573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_9a-0001EsuBft1311_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 165346..165573 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1311_9a-0001 ID=EsuBft1311_9a-0001|Name=EsuBft1311_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=722bp|location=Sequence derived from alignment at Scaffold_589:164852..165573- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATGTTGCAA
GGCGGTCCACGCAGCGTCAAACGCTGGTTGTGGTGTGATGGTATTAACGA
GCACTCACGAAGAGGACGGCAATCCGGGAATCGCGACTGGCATCACCGAC
GGAACGACTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAGTTTG
CTTCGTATGCTGGAGACTCTCGTACTAATGCAGGTCGCGACATCGATGTG
GCGCCTCAGGCCAGGTGGGGGGTTATCCCCTGCTACCGGTGATGCGATCG
ACGGTATGATGTTACTCGGTACATGACCCCGTGGTTAAGGCCTACTCACA
GATTCATTCACACACATGGTGATGTTTTGGGAGTTTTGGAGTGTGCATAT
CATTCTTAATAGCAGGCCTGAACGGTATGTCCAAGGCGACTCGATAGCTT
ATGCCTGTGTCATTGTAGATAAGTGGATTTAGGTGCGCGTGAGGCATTGT
GCTGTAGCATTTAAGACTTGTAGTCTAGAACACCAAGAGTGTTCGTTTCT
TGTTGCAATCAAATTCAAACGGTCGTCTTGTTATAGTAGGTTCGTGTGTG
TAGGGTTCCGAATCACAACATCTTTAATTGCACTAAGAGTGTTGTCGTGC
TTCTATTTGATTTTGCCTAGAATAGACTAACTACATGGGTGTGTGTTGTG
TTTCGTCAATACGGCGTCCTTT
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protein sequence of EsuBft1311_9a-0001

>EsuBft1311_9 ID=EsuBft1311_9|Name=EsuBft1311_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=75bp
MELCDAVRDGGVNLCCKAVHAASNAGCGVMVLTSTHEEDGNPGIATGITD
GTTADGVRGWKSALLVCFVCWRLSY
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mRNA from alignment at Scaffold_589:164852..165573-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1311_9a-0001 ID=EsuBft1311_9a-0001|Name=EsuBft1311_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=722bp|location=Sequence derived from alignment at Scaffold_589:164852..165573- (Ectocarpus subulatus male Bft15b)
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATGTTGCAA
GGCGGTCCACGCAGCGTCAAACGCTGGTTGTGGTGTGATGGTATTAACGA
GCACTCACGAAGAGGACGGCAATCCGGGAATCGCGACTGGCATCACCGAC
GGAACGACTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAGTTTG
CTTCGTATGCTGGAGACTCTCGTACTAATGCAGGTCGCGACATCGATGTG
GCGCCTCAGGCCAGGTGGGGGGTTATCCCCTGCTACCGGTGATGCGATCG
ACGGTATGATGTTACTCGGTACATGACCCCGTGGTTAAGGCCTACTCACA
GATTCATTCACACACATGGTGATGTTTTGGGAGTTTTGGAGTGTGCATAT
CATTCTTAATAGCAGGCCTGAACGGTATGTCCAAGGCGACTCGATAGCTT
ATGCCTGTGTCATTGTAGATAAGTGGATTTAGGTGCGCGTGAGGCATTGT
GCTGTAGCATTTAAGACTTGTAGTCTAGAACACCAAGAGTGTTCGTTTCT
TGTTGCAATCAAATTCAAACGGTCGTCTTGTTATAGTAGGTTCGTGTGTG
TAGGGTTCCGAATCACAACATCTTTAATTGCACTAAGAGTGTTGTCGTGC
TTCTATTTGATTTTGCCTAGAATAGACTAACTACATGGGTGTGTGTTGTG
TTTCGTCAATACGGCGTCCTTT
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Coding sequence (CDS) from alignment at Scaffold_589:164852..165573-

>EsuBft1311_9a-0001 ID=EsuBft1311_9a-0001|Name=EsuBft1311_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=228bp|location=Sequence derived from alignment at Scaffold_589:164852..165573- (Ectocarpus subulatus male Bft15b)
ATGGAGCTGTGCGATGCTGTCAGGGATGGGGGCGTCAACTTATGTTGCAA
GGCGGTCCACGCAGCGTCAAACGCTGGTTGTGGTGTGATGGTATTAACGA
GCACTCACGAAGAGGACGGCAATCCGGGAATCGCGACTGGCATCACCGAC
GGAACGACTGCGGACGGTGTTCGCGGTTGGAAAAGTGCATTACTAGTTTG
CTTCGTATGCTGGAGACTCTCGTACTAA
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