Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1311_4 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | TMhelix |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 187 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-13_000740.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1879bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGATCCGAGATGGGGTCGAGGCAATATACCGAGATTGCGAGTCCTGTGCT
GCCATCCCACAACTTTCGCGCGCATTCGTCCTTCAGAGAGCAAGCCAGCA
ACACCAACATGCAGTACTCCCTCGTTTTCCTGGCCGTTGTGGCGATGCTG
GGTTCGGTGCTTGGATTCCAGGTTGCTCCCAGGGGATTGCCGACGGCATC
GCGCTGCTCGGGAGTGTCCACGTCCCCGCGGGCATCGTCCTCGTTCACCG
CACGACCGGTGGCGGCGACAGCAGCAGGGGGAGCAGCGCCCAGAGCCTCC
GCGCACAAGAGGAGACAACAACGGTTCAGCATGCAGTTCGGAGAAGGAGG
CGGGCCAATCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATA
AGGCGTTCTTCAACAGCGAGCTGGACAACGCCCCAGCGACGGAAAAGGTG
AAGGACCCCGTTGTGATCATCACTCTGGCCTGGATCCTGGGGATGTTCCT
CCTCGCCACCGGGCTCATCCTCAACGGCGTCAACTAACCGGTTGTCTCTT
TGGCTCCATCACGCTGGCCTGGATGGTGGTGGGGGTGTTTTGTTCTTCCT
GGCCGCGAGTCTCCTCCTCCTCAACGTTGCTAACTACAAACATTTGACTT
TTGTGTGGTTGTCTATAGACCCAACGAGGGCGATCTTGGGAAGAAAACTA
GAATGCGGCAGCAGACCATCTTTGTATTAGAAGGGAACATGTTCATCGCT
ACGCAAGGCGTGTCGCTAACCGAAAGGGTCGCCTGGACCCACCAGTGTAC
GTACAGGGTTCGGGGATCGGACTTCGGGGTGATCTCTCTCTCTTTCTATG
CATCTTTTATCGGTGGTTGATGTTGTTGTGACGAAGGAGCTTAATGGGGG
CTGGTGGAGGTGTAGAAGTCACCGATCAGCAAGAGCTCACATAGTTAGGC
TATTTGCGTTTTCGTGGGAGTTGTATGTAGGTTAGAGGACGGGGGAAATG
CAGCAGACGCGGCCTGGTTGGATGCTTCTGTCGGCCCAAGAAGGAAGTAC
ACCATGTAGCCTTGCATTTTTCCGTTCTATTTTTTTTAAGATATAAAGCT
GGGAACACAATTTTTGTTTCGGTCACTTGTTCTAGCCCTTCTGCTTTTCG
TAGCGAGGAATGCCCGGGTTTCGCTTTTGTGGCGTGCCCACAATGAAGAA
ACGTTTGGTGGAGCACCGTGTCGGACCACACAAAGTCACGTTGCATTTTT
TTTGTTTGCCCTCCATATCCGAAAGTGCTGTAGGATTTCTCGAGGTAAGA
GCCGCTCCAGTAGTGGGCTCACCGGCGGGATTCCTCGTACACGCAGAAGG
TTTGCATGGGAGATGAATTTATGCCTGAATTTTCTGGTGGTGGCAAAATA
TGGGAACGAACCTAACTACGATGAGTGATTCTTGGAATAGGTGGTGGCTG
CGTGCGTAGGCTAAGCTCTTTGTCTGAAAGTGGCACGTTGCATGGTCGGG
GTGTGGAGAAGTCGCTCTTTCTAGGGACGGTCGCCGTCTGCACGACGGCT
TCATGGCTCCAGCATGTTTCTCTTGCGGGCAAGATTTCAGGGGCGGGTGG
TCATGTCGTACTTAAGGTTAGGGTTGGATGTCGCGGGAGCTTGCCGAAGA
TAGACAAAACAAGCGTGAACGAGAACGCAGCCTGACTGCTGAGAATGGTG
CAGTTGGTGAAGTGATGATGATTTGGTGAGCATTCTGCACCTGGCTGAGC
TGGAGAGCGATCCATTCGCACACTTTCGCCCCTCTGCCGCAAATGCTGGG
CGGTTTGGGAACGAGTTCTCAAAAGTGGCATCGTGGAAAAATCAGCGGTT
GTCTTCTCACATTGTGATTGTCGGTTGCT back to topprotein sequence of EsuBft1311_4a-0001 >EsuBft1311_4 ID=EsuBft1311_4|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MQYSLVFLAVVAMLGSVLGFQVAPRGLPTASRCSGVSTSPRASSSFTARP
VAATAAGGAAPRASAHKRRQQRFSMQFGEGGGPIEKGTMPSYEEEQDKAF
FNSELDNAPATEKVKDPVVIITLAWILGMFLLATGLILNGVN back to topmRNA from alignment at Scaffold_589:119114..125670+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6557bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)
TGATCCGAGATGGGGTCGAGGCAATATACCGAGATTGCGAGTCCTGTGCT
GCCATCCCACAACTTTCGCGCGCATTCGTCCTTCAGGTATGCGTGTGGCT
TCGCTTGTTTAAAGGAGAGTGTACAAGACGCTAGCCTCTGTCTTGCCGGC
CAGCGTTTGGATCATGCATGAAGAAAATGCCGCAGCGCCCAACGCGCCCG
CTATTTGGCTTCTGGTAGCAAACATCCCCCACCGTCTTTGCCCTCACGCT
CGGTCTTTCCAGAGAGCAAGCCAGCAACACCAACATGCAGTACTCCCTCG
TTTTCCTGGCCGTTGTGGCGATGCTGGGTTCGGTGCTTGGATTCCAGGTG
AGTGTTTCTTTGTCGTCAACGCGGCCTCCTTTTGCGGAAATAAACATGTT
CCTAAGCTGCTGTTTGTCTCAGAGTTAAGAGAGAGCGGGCGGTGACGTTG
TTGACACCACGTATGTGCCTCTTCGCCCTCTAACAACAGCAGCAGCAGTG
TAGCAAGTGGGATACAGCAAGGGTCAACGCCCCCCGCTCCCCCCCCCCTT
CCCTGTCCTCCTTGTGGTGTGCACTCGGGTGTGCTTGCCTGGGTGGGGCC
TTGGTAGGTGGCCGCGGGATGACCATTACAGCCTTTGGATAGCAGCAGCA
ATGAATTTTAGTAGACTCATAATAAACGAAGTACTGCTACACATCCAAGC
TCAGCCGAGATTCACCGACTGCTGTTGTAGGGACTTGAACGCATCCTTCC
ACTGTGGTTAGATCTCGAACTATTTCTGTGTGTTGTGTGCCTTCCTATTT
TTGAGATTGGCTACACCGGAAATCATGCTGGAATTGTGTTGATTGACTTG
CGTATACTCGCCTTGTTGCCGTCAATACAATATTGCAGCGGGTGACGTGA
GATACCACGCCTCGTTTGTACGGATTTTCAAAGATTGTTGCTCCACACAG
CAGAAAGAGTGGTAATGCCGGAAATGGCGGCGTTGAAAACGTCTTGCCGA
AATCTTTCCGAGCGCGTGCAATCATGCAGTTTATTGCGGATTCCTCTTTG
TCATGGAGTGATCGAGCTTTTCATACATCGGTCCGGGGGTGCGTGGTGCG
TATCGTATGTCACCTGTTGAACGGGGGCGTCTTGCCAGACCCCCCGCAAC
ACTGTAGAAACCAAAGGCAGCACCACGCTAACGCTAGAGTTCATGACCAA
TTTATTCCAGCCCCTTTCTAGGATAGAGATGAATCTGTTGTGTTTTGAAT
AATAACAAAAAACACAAACAAGAACCTTACTGCACTGTCCGAGTGTGCTG
CCGCAAGGATGCGAAAGATGGCAGCAACCCCCCGTGAGACCGGCTTCCAA
AGCTCGAATGCCCCACGATCAAGTGGGTGCGGAGAGAGCCCGAATCGTCT
ACGGAAAGCCTTCGACGAGATGTTTCCAAAACCACCCTGTGTGGTGTTGG
TACAATCTCGGTTATGGTGGAGCCATCGAGCTTTGAAAATCGGTTTAGGG
GGGTGCCATCGCTCCGCCTTTGTACGGTGTACGGCTATTTCGTGGAAAAG
CGAACCTTCGAGTAGTAATTTCTGAAGTCGTGGCCCGTTCTTCACACACC
CTTAAATCTCTGCTCGGTGATTTCGACCAAGGAGGCTCGCTGTGTGTGTT
TGGGGGGAAGGAAACGGGGGGGGGGGGGCTCTATCCCTCTCTGGTCTACA
CATCGCTCTTGGCGGAGCGATACTCGAATAGGTACAGTTTCAACAACACA
ACAGTCACGGCAATCATTCGAACAAACACAGCTTGGACCGAAGAAGCTAT
TTGCAGGTTTGACATGCGAACATGCCGCGATCATGCGAACCTACTGCGGT
TGCCTTGTTGTCGAAAGCGTTGCACAGGTCTACAGCCTATTTTGGGTTTA
ACCCATGCTAAATTTGTGAAAAGGTCGTTTGGCTTAAGTTTCCACAGTAC
ACGCACGCAGCGCTTCGAAAGTGCGGTCAACCGGGCGTCCGCACTACTGC
TGTCCAGCGCTCGATCTCGTTCCAATCCGTAACGGCCTAAACCCGACCAC
CAAATGTCTGTTACAGCAAAAAGGCGCCAACACTGGAGAACCTCTGTTAT
AGTTTTGGCCCAGGCTGGAGTTCTTACCCTATTCCCAGGGTCACGGTATG
AACGGCCGCTCTAAAGGTTTTAGCGAAGGGTTTCTTAACCGGGTTCACAA
AAATGGTGCTCAAGTTCTTTGACGTTGGGTTTTTCGAGGCTCAAGCAAGG
ACCAAGTTTTCCTGTGCGGGCGCTGCCGCTATATTGGTTTTAGTTCTTGA
CCAGGTTCACAAATATGGTGCTCAAGTTCTTAGACGTTGGGTTTACAGAG
GCTCAACTGAGGACCAAGTTTTTCTGTGCTGTCTCCACGACAAACGTGTC
AAGAAGGCCCTTCGGGAAGCTGTCTCTTATTCTGCGACATGTGACAGCAA
CAGCACTTTATTTTGTTTTGCCGGCAGGTTGCTCCGAGGGGATCTCTCAC
GAACGATGTAGGGACAAGGGACATTGTTTTGTTCGTAAGGGGTCTTCAAA
GGATTGTTCTCTGATTCTGCCAAGATACGCACATTGCGTATGTATGTGAC
AGCAACACGTTTTTTTTAATATTATTGCTGGCAGGTTGCTCCCAGGGGAT
TGCCGACGGCATCGCGCTGCTCGGGAGTGTCCACGTCCCCGCGGGCATCG
TCCTCGTTCACCGCACGACCGGTGGCGGCGACAGCAGCAGGGGGAGCAGC
GCCCAGAGCCTCCGCGCACAAGAGGAGACAACAACGGTTCAGCATGCAGT
TCGGTGGGAATTTTTTTGTCGCTTTTTTTCTATACGTATCTCCTTTTATG
TTTTGTGAAGTGTGTATCGTATTTGGCCGTCAGGTCTGCGACCTCGATTG
GTTGTCGAACATCCTTTTTCCGGCCAGATCAACGGGAAACGGTCGCTCCG
TTTTGGCATGTCGCTGTTTTTTTGTACGAGGGCTTCAAACGAAACCGGCA
ACCTATTAAGCTCGAAGCCCTCAAGTCGAAACGAATGCAGTTGGTTGGCG
CCCACTGTTATGAAGTTGGCAGCTACACATCATCCCCTTCGATTGTCAAT
ATTTTCGAACGGGTAGTCTTTCTGCGTTTCTATGCATGTTTTCTGAAGTA
AGACTATCAACCGCTGGTGCGGTTTGCGCGCAGTTGCTGCTGTACCGTGT
ATGACATAAGATAACACACCCCCTTGACCATTTTTCGAAGCTCGATTTTT
CAATTGCAGGAACAGTCACATCGTAGAAAACGACGGCGTTGAAACCGTCT
CGTCGAGAGCTTTTCGAAAATGTATCGTTTCGTTTATGCATCCTCTTCGT
TGTCGCATAATCGAGCTTTGAAGATCGGTCCAGGGGGTGTGTTATCTTGT
GTCGTATACGGTACGTTCTCGGCGTGTAGGCTGATAAGCGGTTGCATTTC
GAGTGGAGATTATTTGCACTCTACAATGAGTGAGGCCTAGTCACACTTCG
CCTTGTCATCCTTAGACTAGTGGTTTTGATTTCGGCTCCAATCAAATTTC
GTCCATGACACGGTTCCGCTGACCAGTCTAACGTGTTGATTGCGGTTCCT
TAACCAGTAGTCTACGCAGCAAAATTGATTAAGCAAACATATGAGATACA
TCATTCAATCCGTGCTTTGGGGTTATAGAGTTAGGGTCGGGGATAGGGTC
TGCGTGCCCCGTCCCTATTCTTTTTTCTAGATACTCATAAGATCCTGCGT
AGGCGGTCCTCCTCAACATGCACGCACTAAGACACGAGGTTGTATGACAC
CCATCTAGAAACACGTTAGTATAGGGTGCCGCGGACCAGTCTAAGCGGTT
GATTTCGGAACTTTCTATGATACACACGCCCGCACACACGAAGACAAAAC
GCACGTTGTATAGCACCCCCCCCATAGTAAGGCGTTTGTGTTGGGTTCCG
CTGACTAGTCTGTTGGCCTGAATTCCGCTTCCGTGTGCACCGTGGCAATC
GAACCTGCACTTCATGGACGAACGTCATAACCCCCCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNGTTTGCAGGAGAAGGAGGC
GGGCCAATCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATAA
GGCGTTCTTCAACGTAAGCGGCATCACCCGGATACGGGGGGGGGGGGGCG
GGGGCGGGCGGATGAGTTGCCAAGGTTTTCTCCCTTGATTGCCACGCTTG
TTACGGTCTCCACCGTTCAAAATATAGTTGCCAGGTACCGTAGGTGATGG
AAGATACCACGCCCCCAAATCGACAGATTTTCGAAGCTCGATTGCTCCGC
AGCAGATGGTTTCGAAAACGGAGTCGTTGGAACCATCTCGTGGAGGCCTT
TCCGAGATCACGTCGATTTTGGATTGACGTCCTCTTCTTGGCGGAGTATT
ATTGTCGAGCTTTTGAGTATTCTCCGGTGGTTGGTATCTAGCGTCACCTA
CGTCAGGTCCGGCGTTCGGATGTCGACATTTCGAGACCCGCCCACAAACG
ATCTTTCGTGCATTACGATCTTTCGTGCACCTTTCTTGTACGGCAACCCT
CTTCGGTTATTTACCGCAACATGTTTCTCCCTGCTCTACCATCATGCGGA
CAAACGCACACGTAATTTTTTTTTTTTTTTGCGGCCACGTGATTTTTAGC
TTGCACGCTTTGCCGGCGAACGAAGAACCTGACTGGTTTGCCCTCAGCCT
TTCAAAACGAATGTTTATACAGCAGCAAAATAGTGGTCCCGGCGTGACAC
AAGATAAGAGCGATTCAAGTGGTCTCATCTCTTGGGCAGCGACGGGTGCC
CGGCATGCGGCCGGCCAAATTCCTCGGCACCACGATGATCCCTCGTTCAG
GAACCCCGACGGTATCGAACACGAAAGAAGCGTACATCGGTAGTCAGAAA
ACTCCGCCCTGCCTTGCGCCCACTTTCCCTAGTCCCGATGTCACATACCG
CCTCCCCCCCCCCCCCCCCTCGGCGGTGTTCGGCGTCTGCAGAGCGAGCT
GGACAACGCCCCAGCGACGGAAAAGGTGAAGGACCCCGTTGTGATCATCA
CTCTGGCCTGGATCCTGGGGATGTTCCTCCTCGCCACCGGGCTCATCCTC
AACGGCGTCAACTAACCGGTTGTCTCTTTGGCTCCATCACGCTGGCCTGG
ATGGTGGTGGGGGTGTTTTGTTCTTCCTGGCCGCGAGTCTCCTCCTCCTC
AACGTTGCTAACTACAAACATTTGACTTTTGTGTGGTTGTCTATAGACCC
AACGAGGGCGATCTTGGGAAGAAAACTAGAATGCGGCAGCAGACCATCTT
TGTATTAGAAGGGAACATGTTCATCGCTACGCAAGGCGTGTCGCTAACCG
AAAGGGTCGCCTGGACCCACCAGTGTACGTACAGGGTTCGGGGATCGGAC
TTCGGGGTGATCTCTCTCTCTTTCTATGCATCTTTTATCGGTGGTTGATG
TTGTTGTGACGAAGGAGCTTAATGGGGGCTGGTGGAGGTGTAGAAGTCAC
CGATCAGCAAGAGCTCACATAGTTAGGCTATTTGCGTTTTCGTGGGAGTT
GTATGTAGGTTAGAGGACGGGGGAAATGCAGCAGACGCGGCCTGGTTGGA
TGCTTCTGTCGGCCCAAGAAGGAAGTACACCATGTAGCCTTGCATTTTTC
CGTTCTATTTTTTTTAAGATATAAAGCTGGGAACACAATTTTTGTTTCGG
TCACTTGTTCTAGCCCTTCTGCTTTTCGTAGCGAGGAATGCCCGGGTTTC
GCTTTTGTGGCGTGCCCACAATGAAGAAACGTTTGGTGGAGCACCGTGTC
GGACCACACAAAGTCACGTTGCATTTTTTTTGTTTGCCCTCCATATCCGA
AAGTGCTGTAGGATTTCTCGAGGTAAGAGCCGCTCCAGTAGTGGGCTCAC
CGGCGGGATTCCTCGTACACGCAGAAGGTTTGCATGGGAGATGAATTTAT
GCCTGAATTTTCTGGTGGTGGCAAAATATGGGAACGAACCTAACTACGAT
GAGTGATTCTTGGAATAGGTGGTGGCTGCGTGCGTAGGCTAAGCTCTTTG
TCTGAAAGTGGCACGTTGCATGGTCGGGGTGTGGAGAAGTCGCTCTTTCT
AGGGACGGTCGCCGTCTGCACGACGGCTTCATGGCTCCAGCATGTTTCTC
TTGCGGGCAAGATTTCAGGGGCGGGTGGTCATGTCGTACTTAAGGTTAGG
GTTGGATGTCGCGGGAGCTTGCCGAAGATAGACAAAACAAGCGTGAACGA
GAACGCAGCCTGACTGCTGAGAATGGTGCAGTTGGTGAAGTGATGATGAT
TTGGTGAGCATTCTGCACCTGGCTGAGCTGGAGAGCGATCCATTCGCACA
CTTTCGCCCCTCTGCCGCAAATGCTGGGCGGTTTGGGAACGAGTTCTCAA
AAGTGGCATCGTGGAAAAATCAGCGGTTGTCTTCTCACATTGTGATTGTC
GGTTGCT back to topCoding sequence (CDS) from alignment at Scaffold_589:119114..125670+ >EsuBft1311_4a-0001 ID=EsuBft1311_4a-0001|Name=EsuBft1311_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=429bp|location=Sequence derived from alignment at Scaffold_589:119114..125670+ (Ectocarpus subulatus male Bft15b)
ATGCAGTACTCCCTCGTTTTCCTGGCCGTTGTGGCGATGCTGGGTTCGGT
GCTTGGATTCCAGGTTGCTCCCAGGGGATTGCCGACGGCATCGCGCTGCT
CGGGAGTGTCCACGTCCCCGCGGGCATCGTCCTCGTTCACCGCACGACCG
GTGGCGGCGACAGCAGCAGGGGGAGCAGCGCCCAGAGCCTCCGCGCACAA
GAGGAGACAACAACGGTTCAGCATGCAGTTCGGAGAAGGAGGCGGGCCAA
TCGAGAAGGGAACCATGCCGTCCTACGAAGAAGAGCAGGATAAGGCGTTC
TTCAACAGCGAGCTGGACAACGCCCCAGCGACGGAAAAGGTGAAGGACCC
CGTTGTGATCATCACTCTGGCCTGGATCCTGGGGATGTTCCTCCTCGCCA
CCGGGCTCATCCTCAACGGCGTCAACTAA back to top
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