Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LBY3 |
| ProteomeId | EsuBft1311_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | IPR018629 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 224 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 5.02e-64 |
| EggNOG OGs | COG4886@1|root,2R960@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | regulation of response to stimulus |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2248bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAGTGCCTGCA
GCGCATTTTCGGTACGCTGGGCATTTATGTGTCACTACTTGGGTAGAAGA
ATAGCATTCCGTTCCGGCAGAAATGCATGGATTAGGTGAATGTGACGTTG
AGCACTCGTCTTCATGAGAAGCGCGTCCAAGATTTTGTGTTTGCTCCGGT
GTCGTGATGTACTTTGGTTTGTTTTGGAAATTTCAGTTTGGATTTGGCAG
GAAATGCAAATCGCGATCACTGCCACTCCATTCTGCGCCTACACGTGAGT
CGAGTAGTTGGCGAGGAAGACGGTGCTGAAGGGAAATGATAGCGGGCTCA
GGGTAGTGAATGCCACTCCGCCCTTCCCACGCAAGTCTTTCAAGAATTTC
TGTAGTCCCAATGATGCGCCTCTCTTGGCTTCGACAGTTGGATATGCATG
TGGTTGTGCCCTGACGCTGCCCGGCCGGTGAAAACTCGGCATGCCGGAGC
TGGTTTTGGTTCTGTTGTACCTTTGTGCTTATGCCACCAATGCTTCGGAC
AAACGACACTATATTCTTGAGCAGAGAACACATTTGAGAAACAGCCCC back to topprotein sequence of EsuBft1311_2a-0001 >EsuBft1311_2 ID=EsuBft1311_2|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=563bp
MTVSSTLMACGEIDWVLIFFVLVAPLVTGEVPKSLLDHPNRKGGAFQFHV
TEDGAPVPGYKSWKSVGIQLVLGYADVGTDVDAVVSYYQADHMWWFALGM
IFIIGPALFAAIVLLRREHWLRRVLVALQLGMLFGALVSWGTSSYSPVLA
SLRVMEPLYESVPQLMLQLYGLLLEWDNDGTMWLSRRLLSILFSCFSLAY
ATTGLVAEQALSRLAPTADAASASCPGLTGLVFGAVPANSSVAVYRSRWN
SQKFVWAFLFYQVLEIGAKFISLGLLALVWRAYFFLALFWLWGSRAYVLR
RLIAGEHSLRVRSQFRLVGMPFMDSVMDVLQTYDVGCALTTVEFVFCLTI
GNMFYTDEGGQLPTDVGRVWTYVAAVCMVGKLCLGYLIVRPFKRVVRFGT
EQEEQTSGRQHGGGDVGGNGDVDPGGSSRADDEGMLGDTRARTGYGDEGS
RGVVALASRGARVHEGMSLSRTVNRRTLSWTALEDSEEASRVGVGLDRQG
EPGSAGSSAGLEMMTGMEEGKVTSEVAPSEGTDLEPVLHILTHVATGRLV
SDDAEVQGEEDSA back to topmRNA from alignment at Scaffold_589:89521..91768+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2248bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAGTGCCTGCA
GCGCATTTTCGGTACGCTGGGCATTTATGTGTCACTACTTGGGTAGAAGA
ATAGCATTCCGTTCCGGCAGAAATGCATGGATTAGGTGAATGTGACGTTG
AGCACTCGTCTTCATGAGAAGCGCGTCCAAGATTTTGTGTTTGCTCCGGT
GTCGTGATGTACTTTGGTTTGTTTTGGAAATTTCAGTTTGGATTTGGCAG
GAAATGCAAATCGCGATCACTGCCACTCCATTCTGCGCCTACACGTGAGT
CGAGTAGTTGGCGAGGAAGACGGTGCTGAAGGGAAATGATAGCGGGCTCA
GGGTAGTGAATGCCACTCCGCCCTTCCCACGCAAGTCTTTCAAGAATTTC
TGTAGTCCCAATGATGCGCCTCTCTTGGCTTCGACAGTTGGATATGCATG
TGGTTGTGCCCTGACGCTGCCCGGCCGGTGAAAACTCGGCATGCCGGAGC
TGGTTTTGGTTCTGTTGTACCTTTGTGCTTATGCCACCAATGCTTCGGAC
AAACGACACTATATTCTTGAGCAGAGAACACATTTGAGAAACAGCCCC back to topCoding sequence (CDS) from alignment at Scaffold_589:89521..91768+ >EsuBft1311_2a-0001 ID=EsuBft1311_2a-0001|Name=EsuBft1311_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1692bp|location=Sequence derived from alignment at Scaffold_589:89521..91768+ (Ectocarpus subulatus male Bft15b)
ATGACTGTGTCCTCGACCCTCATGGCTTGTGGTGAAATCGATTGGGTGTT
AATATTTTTCGTGCTTGTCGCTCCCCTCGTGACAGGCGAAGTGCCCAAGT
CTCTGCTGGACCACCCTAATCGGAAAGGGGGGGCTTTTCAGTTTCATGTT
ACGGAAGACGGCGCCCCCGTGCCTGGGTACAAGTCGTGGAAAAGTGTCGG
CATCCAGTTGGTTCTCGGATACGCTGACGTTGGTACGGATGTGGATGCGG
TGGTGTCCTATTACCAGGCCGATCATATGTGGTGGTTTGCCTTGGGGATG
ATATTCATCATTGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTCCGCCG
TGAACACTGGTTGAGGCGGGTCCTAGTTGCTCTGCAGTTGGGGATGCTGT
TTGGGGCATTGGTCTCTTGGGGTACTTCATCATACTCCCCTGTACTGGCA
AGCTTGCGGGTGATGGAGCCGCTGTATGAGTCGGTCCCGCAGCTGATGTT
ACAACTGTATGGCCTGCTACTTGAGTGGGATAATGACGGAACTATGTGGC
TGTCAAGGCGGCTCTTATCGATCTTGTTCTCCTGCTTTTCTCTAGCCTAT
GCCACAACGGGTTTGGTGGCGGAGCAGGCGTTGTCTCGACTTGCTCCTAC
CGCCGACGCTGCGAGTGCGAGTTGTCCCGGCCTGACAGGGCTTGTTTTCG
GGGCCGTCCCAGCTAACAGCAGCGTTGCAGTATACAGATCCAGGTGGAAT
TCCCAGAAGTTTGTATGGGCTTTCTTGTTTTATCAAGTGCTTGAGATAGG
GGCTAAGTTCATTTCACTTGGTCTCCTGGCGTTGGTGTGGCGGGCGTACT
TCTTCCTCGCGCTGTTTTGGCTTTGGGGTTCTCGTGCGTATGTATTGCGT
CGCTTGATTGCTGGGGAACACAGCCTTCGCGTTCGGTCCCAATTTCGACT
TGTGGGCATGCCTTTCATGGACTCTGTGATGGATGTCTTACAAACATACG
ACGTAGGGTGTGCACTCACAACGGTGGAGTTCGTGTTTTGCTTGACGATT
GGCAACATGTTTTACACCGATGAGGGGGGTCAGTTGCCTACCGATGTCGG
TCGTGTGTGGACGTACGTGGCTGCGGTGTGTATGGTGGGGAAGTTGTGTT
TGGGCTACCTGATCGTGAGGCCGTTCAAGAGAGTCGTTCGCTTCGGCACT
GAGCAAGAGGAGCAGACCTCAGGTCGACAGCACGGTGGCGGTGATGTTGG
CGGCAACGGAGATGTTGACCCTGGTGGGAGTTCTCGTGCTGATGATGAAG
GAATGCTCGGGGACACGAGAGCGCGGACAGGTTACGGTGACGAGGGCAGT
AGAGGTGTAGTCGCCCTTGCCAGCCGGGGCGCACGCGTACACGAAGGCAT
GTCGCTTTCCAGGACGGTGAATCGGCGAACACTGTCGTGGACTGCTCTCG
AGGACAGCGAGGAGGCGTCACGTGTTGGTGTTGGACTAGATAGACAGGGT
GAGCCGGGTAGCGCAGGCTCTTCGGCAGGGCTGGAGATGATGACAGGAAT
GGAAGAGGGGAAGGTGACGAGCGAAGTAGCACCTTCGGAGGGAACAGACC
TTGAGCCTGTTCTGCATATCTTGACCCACGTGGCGACGGGTCGGCTAGTT
AGTGATGACGCCGAGGTCCAGGGCGAGGAAGATTCTGCGTAG back to top
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