EsuBft1285_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1285_5a-0001
Unique NameEsuBft1285_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:292778..294467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI069232-PA
ProteomeIdEsuBft1285_5
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl33154|Opisthokonta
Length1316
Hectar predicted targeting categoryother localisation
Evalue3.53e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionEncoded by
COG categoryJ
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_5aEsuBft1285_5aEctocarpus subulatus male Bft15bgeneScaffold_647 292778..294467 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_5a-0001-exonEsuBft1285_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 292778..293458 +
EsuBft1285_5a-0001-exonagat-exon-71508Ectocarpus subulatus male Bft15bexonScaffold_647 293643..293864 +
EsuBft1285_5a-0001-exonagat-exon-71509Ectocarpus subulatus male Bft15bexonScaffold_647 294055..294467 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_5a-0001-exonagat-five_prime_utr-1773Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 292778..293232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_5a-0001-cdsEsuBft1285_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 293233..293458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_5a-0001EsuBft1285_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 293233..294467 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1285_5a-0001 ID=EsuBft1285_5a-0001|Name=EsuBft1285_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1316bp|location=Sequence derived from alignment at Scaffold_647:292778..294467+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTTTTTCTTTGTGTTCATCGTATTGGACGATTGTGTGCAAAATCTTG
GCTCTTGAAACGCATTTTAACCCGCGCAATCAGCACCTCGTAAAAGTGGT
TCTTAATACCCTCCAACCGGATTCTGTGGTACTTCCAACTTCAACTTAGG
CAAAATAGCTACAGCCTTAACTCGTTACCAATAACGTTTTTTTTTTTTTT
TTCTTTGACAGGTAGTTGATCATGTTAGCTATCCTTCGGTACCTAGACAT
CATCCTATCTCGTTAAACTGACCAAGAACGAGCTCTTGGCGCGGGGGGTG
GCTTAAGTGGTTCTTAATACCCGCCGCTACTTAGGTTCCCTTTCGTGTGG
AAGAACAATCAGGACGGCGTGGCGGTTCGCGCGAAAACTCGTGTAGTGGT
GCAAGGCTTTTACGAAGCTGATACGGGGGCCTAAAAGGCGGCGCCGGTGG
CGTCCATGGAATCCGTGCACATGGTGTTAGCAGTTGCTGCCAACAACCAT
CTCGTCCTGAAGCAATTGGGTATCAAGACGGCATTTCTACATGCCATAAT
CCCCGAAGAGGCGGAGCCTACATACGTCATACCGCCGAAGGGATTCCCAT
GTTCGCTGGGTCAAGCTAAACAAGTCTGGCTTCTCAAGGCGTGGCTCTAT
GGCCTGCGCCTGTCCCCGAAGGGATGGAACGTGGATCTGGGGGATGCGAA
GTTCCTTCTGGGAATGGCCATTCAGCGCCATCTCAACGCCGGAACACTTC
TCCTGACGCAAGAGGCGTACACCAAGGCGTGCTGGCTAAGTTCCATGGCT
GACGCACACCCGACGAAGACGCCGGCTGAGGTTGAGCCGATCACTACGGC
GGAGGATGAAGTGCTTTCGCCAGAGGACACCAAGAACTTCCGGTCGGCTA
CGGTCGACTACGGGGATCGTTCTATTCCTAGCCGGTGGACGGTGGACTGG
AGGGCGGCCAAACAACCGCTGGTGGCCGTCTCATCGGTGGAGCCGGAGTA
CGTACGTGGCGTTGTCCAAGGCTTGCCAGCTCATCATCCCCTTCCGCGCC
CACTGAAGACTATAAACCGTGCCCAGAAGGAGGCAACGGTGATTTACGAG
GATAACTCCGGGGCTATATTGACTAGCCTTAGCTCCAAGATCACGCCCAG
GACCAAGCATATTGATATCAAGTATCACCACATCAGGTCGCTGATCCAGG
ATGGAGTCGTAAAGGTCGAGAAGATCGAGTCAGCAATGCAGAAAGCTGAC
ATGTTTACCAAGAGTTTGGGTGCTGTGAAGTTCATCAAGAACAGCATGAT
GCTCCTTCGAGAATAA
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protein sequence of EsuBft1285_5a-0001

>EsuBft1285_5 ID=EsuBft1285_5|Name=EsuBft1285_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MESVHMVLAVAANNHLVLKQLGIKTAFLHAIIPEEAEPTYVIPPKGFPCS
LGQAKQVWLLKAWLYGLRLSPKGWNVDLGDAKFLLGMAIQRHLNAGTLLL
TQEAYTKACWLSSMADAHPTKTPAEVEPITTAEDEVLSPEDTKNFRSATV
DYGDRSIPSRWTVDWRAAKQPLVAVSSVEPEYVRGVVQGLPAHHPLPRPL
KTINRAQKEATVIYEDNSGAILTSLSSKITPRTKHIDIKYHHIRSLIQDG
VVKVEKIESAMQKADMFTKSLGAVKFIKNSMMLLRE
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mRNA from alignment at Scaffold_647:292778..294467+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1285_5a-0001 ID=EsuBft1285_5a-0001|Name=EsuBft1285_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1690bp|location=Sequence derived from alignment at Scaffold_647:292778..294467+ (Ectocarpus subulatus male Bft15b)
GTCGTTTTTCTTTGTGTTCATCGTATTGGACGATTGTGTGCAAAATCTTG
GCTCTTGAAACGCATTTTAACCCGCGCAATCAGCACCTCGTAAAAGTGGT
TCTTAATACCCTCCAACCGGATTCTGTGGTACTTCCAACTTCAACTTAGG
CAAAATAGCTACAGCCTTAACTCGTTACCAATAACGTTTTTTTTTTTTTT
TTCTTTGACAGGTAGTTGATCATGTTAGCTATCCTTCGGTACCTAGACAT
CATCCTATCTCGTTAAACTGACCAAGAACGAGCTCTTGGCGCGGGGGGTG
GCTTAAGTGGTTCTTAATACCCGCCGCTACTTAGGTTCCCTTTCGTGTGG
AAGAACAATCAGGACGGCGTGGCGGTTCGCGCGAAAACTCGTGTAGTGGT
GCAAGGCTTTTACGAAGCTGATACGGGGGCCTAAAAGGCGGCGCCGGTGG
CGTCCATGGAATCCGTGCACATGGTGTTAGCAGTTGCTGCCAACAACCAT
CTCGTCCTGAAGCAATTGGGTATCAAGACGGCATTTCTACATGCCATAAT
CCCCGAAGAGGCGGAGCCTACATACGTCATACCGCCGAAGGGATTCCCAT
GTTCGCTGGGTCAAGCTAAACAAGTCTGGCTTCTCAAGGCGTGGCTCTAT
GGCCTGCGCCTGTCCCCGAAGGGATGGAACGGTACTTTTCATGTCTTTCT
GCTGGAGCTTGGCTTCGTGCAGAGCACCGCAGACCCGTGCCTTTTTCTCA
CTGCAAGACGGATAAGTACATCTGCTTGTATTCGTGGACGACATCCTGTT
CACCGGCACCAATGAAGATCTGGTGACGACAGTAATTTCGCAGCTGAAGG
AAAGGTTCCAAACAGTGGATCTGGGGGATGCGAAGTTCCTTCTGGGAATG
GCCATTCAGCGCCATCTCAACGCCGGAACACTTCTCCTGACGCAAGAGGC
GTACACCAAGGCGTGCTGGCTAAGTTCCATGGCTGACGCACACCCGACGA
AGACGCCGGCTGAGGTTGAGCCGATCACTACGGCGGAGGATGAAGTGCTT
TCGCCAGAGGACACCAAGAACTTCCGGTCGGCTACGGGTTCGGTTCTTCA
CCTTGCAGGGGAACGAGGCCGGACGTTGCATACTCAGTGTTGGTGCTTAC
CAGGAGCATGGCGAAACCGGGACCGAAGGCGATGGCCAAGCTGAAGCGGC
TGCTTCGGTGCCTAAAGGGGACCACCTCCACGGCGTACGCTGACTTGGAC
TTCGGAGGTGACCTAGACGACCGGAAGTCGACTACGGGGATCGTTCTATT
CCTAGCCGGTGGACGGTGGACTGGAGGGCGGCCAAACAACCGCTGGTGGC
CGTCTCATCGGTGGAGCCGGAGTACGTACGTGGCGTTGTCCAAGGCTTGC
CAGCTCATCATCCCCTTCCGCGCCCACTGAAGACTATAAACCGTGCCCAG
AAGGAGGCAACGGTGATTTACGAGGATAACTCCGGGGCTATATTGACTAG
CCTTAGCTCCAAGATCACGCCCAGGACCAAGCATATTGATATCAAGTATC
ACCACATCAGGTCGCTGATCCAGGATGGAGTCGTAAAGGTCGAGAAGATC
GAGTCAGCAATGCAGAAAGCTGACATGTTTACCAAGAGTTTGGGTGCTGT
GAAGTTCATCAAGAACAGCATGATGCTCCTTCGAGAATAA
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Coding sequence (CDS) from alignment at Scaffold_647:292778..294467+

>EsuBft1285_5a-0001 ID=EsuBft1285_5a-0001|Name=EsuBft1285_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_647:292778..294467+ (Ectocarpus subulatus male Bft15b)
ATGGAATCCGTGCACATGGTGTTAGCAGTTGCTGCCAACAACCATCTCGT
CCTGAAGCAATTGGGTATCAAGACGGCATTTCTACATGCCATAATCCCCG
AAGAGGCGGAGCCTACATACGTCATACCGCCGAAGGGATTCCCATGTTCG
CTGGGTCAAGCTAAACAAGTCTGGCTTCTCAAGGCGTGGCTCTATGGCCT
GCGCCTGTCCCCGAAGGGATGGAACGTGGATCTGGGGGATGCGAAGTTCC
TTCTGGGAATGGCCATTCAGCGCCATCTCAACGCCGGAACACTTCTCCTG
ACGCAAGAGGCGTACACCAAGGCGTGCTGGCTAAGTTCCATGGCTGACGC
ACACCCGACGAAGACGCCGGCTGAGGTTGAGCCGATCACTACGGCGGAGG
ATGAAGTGCTTTCGCCAGAGGACACCAAGAACTTCCGGTCGGCTACGGTC
GACTACGGGGATCGTTCTATTCCTAGCCGGTGGACGGTGGACTGGAGGGC
GGCCAAACAACCGCTGGTGGCCGTCTCATCGGTGGAGCCGGAGTACGTAC
GTGGCGTTGTCCAAGGCTTGCCAGCTCATCATCCCCTTCCGCGCCCACTG
AAGACTATAAACCGTGCCCAGAAGGAGGCAACGGTGATTTACGAGGATAA
CTCCGGGGCTATATTGACTAGCCTTAGCTCCAAGATCACGCCCAGGACCA
AGCATATTGATATCAAGTATCACCACATCAGGTCGCTGATCCAGGATGGA
GTCGTAAAGGTCGAGAAGATCGAGTCAGCAATGCAGAAAGCTGACATGTT
TACCAAGAGTTTGGGTGCTGTGAAGTTCATCAAGAACAGCATGATGCTCC
TTCGAGAATAA
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