EsuBft1285_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1285_2a-0001
Unique Name	EsuBft1285_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:249416..261077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LSW6
ProteomeId	EsuBft1285_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	58
Hectar predicted targeting category	other localisation
Evalue	4.55e-50
EggNOG OGs	COG1132@1\|root,KOG0054@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K05673
KEGG TC	3.A.1.208.7
KEGG Pathway	ko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_2a	EsuBft1285_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 249416..261077 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_2a-0001-exon	EsuBft1285_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 249416..249708 +
EsuBft1285_2a-0001-exon	agat-exon-71477	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 260058..260096 +
EsuBft1285_2a-0001-exon	agat-exon-71475	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 260739..260929 +
EsuBft1285_2a-0001-exon	agat-exon-71476	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 261016..261077 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_2a-0001-cds	EsuBft1285_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 249416..249708 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_2a-0001	EsuBft1285_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 249416..261077 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:249416..261077+
coding sequence from alignment at Scaffold_647:249416..261077+

spliced messenger RNA

>EsuBft1285_2a-0001 ID=EsuBft1285_2a-0001|Name=EsuBft1285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=585bp|location=Sequence derived from alignment at Scaffold_647:249416..261077+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTGTGTGTCAAGCCGACAAGACCAGTCAAGGCCAAGCAAGTGT
ACGTGGTGGCCAGGACGCGACTGCTTCGTCCAGGGAACAGCAGCAACGCC
AGCATGCTGAAGACGGCGAAAATGTGGCACATCAACAACCCGATAACCGC
ATGGCGGCAGCCATGAAGAGAGGAGGCATCATGGGCTGGGGATCCTACTT
GACGTTCGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCC
TCAAGGAGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGCCGACAT
CTCTATGACATGCTCCGCCGCAACTGGGAATGGGAGAGGGCCAGGATGGG
CGAAGACAGCGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGA
GGGCTCTGGTGGCCACGTTCAAGTGGCGACTGACGCTAACAGCGTTGCTC
ATGATCGGGGATAGCATTTGTCGCATCATTCAGGTGTGGGGCAAGCAGGG
GCGGAATGGGGGGTCTAGCAGCGGGGTGGATGTCGTTGCGGCTGGGTGCC
AAACAGGAGATGGTGGAACGAGGTGGGGATCCTAG

protein sequence of EsuBft1285_2a-0001

>EsuBft1285_2 ID=EsuBft1285_2|Name=EsuBft1285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNR
MAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHESRH
LYDMLRRNWEWERARMGEDSEHSRGRRKGTTLLRALVATFKWRLTLTALL
MIGDSICRIIQVWGKQGRNGGSSSGVDVVAAGCQTGDGGTRWGS

mRNA from alignment at Scaffold_647:249416..261077+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1285_2a-0001 ID=EsuBft1285_2a-0001|Name=EsuBft1285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=11662bp|location=Sequence derived from alignment at Scaffold_647:249416..261077+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCTGTGTGTCAAGCCGACAAGACCAGTCAAGGCCAAGCAAGTGT
ACGTGGTGGCCAGGACGCGACTGCTTCGTCCAGGGAACAGCAGCAACGCC
AGCATGCTGAAGACGGCGAAAATGTGGCACATCAACAACCCGATAACCGC
ATGGCGGCAGCCATGAAGAGAGGAGGCATCATGGGCTGGGGATCCTACTT
GACGTTCGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCC
TCAAGGAGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGGTGGGAA
GCGGGACCAAACAAACATGTTCAATGACAGGGGTTTTGGCCGCTGCCGCC
GCTGGTCATTGGAGCGATTCCAAGATATTGCTATGTTTTTCTTCCGCAAC
AACATGTGTTCGACGGTGTGTTTTTGATGTGGGCATGGTCCAGATGTTTG
TGTGACATGTTGTTTCCGGCGCTAGTGGCGGGCCTTGACGACGTTGACCC
GTCCAAACCGATCCCAAGATGACAGTTTCGTGTGGACCACGACACTTGCG
TGTGCTGACACAGAAAGCACCTCGGGCGCACTGAACCCGCCGGGAAATCG
AGACAACCTATCCATCTGACTGACGAAGGCAGGGCTGTTGCTGTGGCTAT
TCGCGGAAATGCGTAGAGACGCAGAAAAACACATCAGGGGCGTGGAACTC
GAACCCAATACCATCATCATACAACAGCAGTACTGTCGGTAGTCCGATAT
AATGCCGGTGGTTGACACCGATTTCGGACTTGTCAACCACGACACCGAAC
CAACACCCCCACATATTCTAGGCCTTTGCTCCATCGGCCGTTTTGTTTGT
ATGACGGAAAATAAGGTGAAATTTACTTGAAACTAGTACGGAAATGAAGT
CGGGCGGTGGCCAAAATACCGTATACCGTGCTGGAATGTGGCCAAAGCAC
GGTACAGGGTAGAACGGCATACAAACGAGGCTGAATGGAGCCACGTGATT
GGTCGAAATAGGACCGCTCCCTCCGGTGGCCAATATATCGGACGGTATAC
CTTGCAGAGGCCACTCAGCTCGCGAGGCCACCGTGTACGGTAACCACATG
TACCGTGTTTTGGCCACCTCGAGCGAGGCTGTTCGCTCAACCGACCGACG
CATGTCAGGCCTCTCGCCAACGCCCCGCCGGTGACGTGGACGCGCAGTGC
ACACGCGATCGCGGACAAACTTTTGGGATGGATGCATTCCTTCTCTCTTT
CTCTCGCATCTCGCACACCACACAACCACAAATTATTCACACACCACACA
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NNNNNNTGGTGCTGGTGTGTGGTGTGTGGTGTGTGAATAATTTGTGGTTG
TGTGGTGTGCGAGATGCGAGAGAAAGAGAGAAGGAATGCATCCATCCCAA
AAGTTTGTCCGCGATCGCGTGTGCACTGCGCGTCCACGTCACCGGCGGGG
CGTTGGCGAGAGGCCTGACATGCGTCGGTCGGTTGAGCGAACAGCCTCGC
TCGAGGTGGCCAAAACACGGTACATGTGGTTACCGTACACGGTGGCCTCG
CGAGCTGAGTGGCCTCTGCAAGGTATACCGTCCGATATATTGGCCACCGG
AGATGCGGTCCTATTTCGACCAATCACGTGGCTCCATTCAGCCTCGTTTG
TATGCCGTTCTACCCTGTACCGTGCTTTGGCCACATTCCAGCACGGTATA
CCGTATTTTGACCACTGCCCAATGAAGTTTGTGTACCTAAATCGAAAATC
AAACGGCCGATGGAGCAAAGGCTTAACATGTTCTTTCTTTTTTTCATTGG
CCGTTTCACCTGCATGTTGCTGTAGGAGGAGACCGGCATTTGATAGAATC
GGCCTCAACAACCGATTCCAGCATTCCTGAGGGTCTGAAAATTTCGCTAT
AATGCCGGTACCGGCACTACTCTAGACTGTAGGAAACCGTCGAGATATTC
AGTAAGGAAACGTGTAGCACACACCACGAGCATCAGGTGACGGGGGAATG
ACAACTAGGGTGGATAGGTAGCAGAATGCTGCTTCGTATTTGCCTTGTTC
CCGCGATTGCGCTCGTCGTCGTTGCAACAGAAAGGCGGTGAAAATTGTGG
TCAAGCGCGACAAACGAAAATGTGACAAGTAAAGCAAATTCCGCTCGATG
AATCGTGGTCGATTTTCCGGCGCTGGCACATTGGCTTCGACCCTCGCCGT
TGGGCCTCGGAAACCTGCTAAATAGAACCGATGCTGGTAGATAACCTGCG
GGACGATCTCTGTACACTGGCTTCGATACAGTAGGCTGGTTTGTGAATCA
AGCTGGGGGCTGAAAATCTCCTATTAGACCACTGTTTATGGCAAAAAAAT
CTTGATCTTCCTTTCTTACGACAAATGTTTACTTTTTCGACCTTTTGGGC
AGTCTGCCTCCCGAACGAGTGCGAATCAGCTGTTCGACCTTTGAGAACAG
TCACAGCTTTGGCTAATATGTCTACAGATCGCCTACATGTTTCGCCAGGG
TCCACGTTTGATTTTTTTCCAGCAGAGCAAGATGTTGAAGATTCGGCCGA
AAGGCCACCTCGGAGCAAATCTTGGGCCAAGATCTGTCCAAAAGCTGGTG
TTGGAAAAATCTTGCGTGAAAATTGCGCACCTTGACAAAATCAAACGTGG
ACCCTGGCGAAACATGTAGGCGGGACACCAACTCCGGGCATGTTTATTTT
CAAGGGTTTACTCGGTAATAATACCGCCGTGAAATTAACGCCGTGGTGGG
CGGTCCCGGTAATCCGCCGTTGTACCGCCGTTTTTTTGTTTTTCCGCTTC
CGCCAAAGTCGTTACCGCCGAAATACGCGTGACCGCCCTCCGCCAAAACA
ATTCCCGCCGCAAGGCGTTACCGCCGAAAATTCACCGCCTTTTTTTGTTT
GACCGCCTTCGCCAAAGTCGTTTCGGCCAAAACAGGCATTTCCGCGGTAC
AATTACCGCCAAATGGCAGTACCGCCGAAAACCTGTCCACCTAAAAAACC
GTTGCCGATAAACCCTTGTATATTTTCAATTGTGGCTAGGGCACAGCACA
TTGTGCTCTAGGACTTGCGCGAGATTTCCCATGGACATTCGTGTAGTGAT
ATCGAAGCACCTGTAGAGCTGCTGGATGTATATTTCCTGGAGACATATCC
GAGACGAAAAGCGTCCAACCATACTTCCAGAATAACGTACGATGAACTTC
TTACACGAACCCTGTCATGTCTGCCTGTAAGTATGTATGTCTTGGCCGTG
GTACGAAAAAGCGTGGTATCATGCAAGTATCATGCGGGTTGAGTTTGAGC
TCGGCGATTTGAAGGTCGCGATCACACCTCGAAGCAGGCAAGAGTGATAC
CTGGACCTTCCCTTAAATAGACACCTGAGATGCGTCTAGGAGCTGTTTCC
CTTCAGTGGGATCCTGCTCTCAGAGGCCCGTGGCTTAATCTTTGGCAACG
GGAGGATTGTTCACTTGATGTTCACCACGCGTGTGACGTAGATCGGACCT
TCCCAATGCTCGAACGTGAGGGGTCGCCCTGGGTCTCGCGGTGTTGTGGA
CTTTCGGGCGGGTGGTTTCGTACGATCACCCGGGTGCCAACGAGGTGTGC
TTGCTACTTGTTGCGTGCAGGAAGAAAGAAGGCAGTGTTCCGGTCTTCAC
GTGTAGGAGGCTGTGTGGAGGGGAAAAATTGTCGTGTTGCCCCCGTCAGC
TGCGGCTTACTGCTCTTTGCTGTGTGTGCATCAACCCCACAATTCCGTTC
GGTGCTTGAGTGTCGAGTTGAGTCTTGTAGGGTGAGGTCCAGGTGGTGGG
CTATGGAAGGCCATATATTCAAACAGGGTGGTAGATTCGTTGTTTCCCCC
ACCGGCCATGAGAGCACCTAGACCAACCGTTTCAACTTCACGATGGGCCC
CACGATTGCCGTGCAACGCAGCAACGCACTTGTTCGTGCCCCGTGTGGCT
TCGAATCTTGTAGGGCAAGATCCGGCTGTTGAGGAAACTATGGTTGATCT
TCCTTTCCGGTGGGCAGCCTCGCCGGGGTATTGACGAAAGGGGGTGTACC
CCGCGTGTTTGGGCACAAAATGGGGTAGTTTTTTTTGGTGTGGGCTTACC
GCGCCGAAGACCTCGAAACGAGCGCGTTGCACCGCAGACTACCACAGGTG
TGACGGCAGAAGAATAAATTGTAAGAGATAACGGTGGTGTGCAGTGCAAC
ACGCAGCGTGGTCTGCGCTCGACAAGGGGACAGAAAATGTGGAAATTTGG
TGGTCTGCGATTGCCATTTCGACAGTCTGCAGGGAGCGTCACTGTCGCTG
AACGAGAAGGGGTATGCCTTGAACATTCTGGGGTATGTTTGTCAACGATA
TTGGGTGCCAGTACCTCGAACATTTTTTGCAGACAAGGGGGTTAACCCGA
CGGTTTCGTGAAGTTTTTCTGTGTATCATATGATTGTCACCCACCATTTC
CCCCCGTCCTTGTTCTTTTGTGTCTTTTTCTCTTTCAGTTCAGCTTGCTT
TCCCTACCCTCGTTCCCCACGTGTCGTGTGCAACCCCTTCCGTCATTCCT
CCTGACGTCTCCGCTCCCTCTTCTTGTCCCTCTCCCACCCCTGGCGTTTT
TGCTTGACCTCTCTCACGGTGAAACACCGCCGTGGAACATACCATGGCAT
GCTGGTTTCCGCTTCGGACCACCGGAGAACACCCGAACACAGCCGACATC
TCTATGACATGCTCCGCCGCAACTGGGAATGGTGAGTGTATATCGTGTTT
TGGAGAGATGGGGATGCTACTTGAACTCGCGAAAGGCGACAAGAACGAAA
CAACCTCCGCGCCGGGGAGTTGTGCTAACGCAAGGAGCCTGACCCCATAA
GCTTGCAGATCGTGCCGCGAGTACAATTTGCTACATAGAGGTAACTCAGT
GTTGGGTGGTTTCAACCTGGGGAGGGGCAGGGTGTCCGCACTCGGTTGAC
AATGTGTGGCATCGACAGGCGTGCTTCGCTGACGTTCTTGGTTTGGTCAA
AGGGGTTGCTCCGCCAACCGTTCCCATGCATGGCACACTTCTCTTCTAGA
CTAGTTTTTTTCACCAAAGCGGCCTTCCCCATGTGCTCGATCGAGGTTCC
GTGGACCTTTTGGTCATACAGGAATTGGCTCTCACACTTCGAAAACCTTG
GCTACACAACTTGAAAGAGCGGTCACGGACCGCGCTGTCGGTTTTGGAGT
GTTCTCTCCCCTCGACGAGTCTCACGCAACACTGCTGCGCTGTAGTATTG
CAAGTACATATGATGCTGGCCCATTTCAGCTTGGCGGCGCGAGGCCCTCC
GGCACGGAACCACGGCGAACGTTTGTTTTTGTGCCCGCGGTGCCGTCCCG
ACCGTCACAACGAACATTTGCAGGGAGAGGGCCAGGATGGGCGAAGACAG
CGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGAGGGCTCTGG
TGGCCACGTTCAAGTGGCGACTGACGCTAACAGCGTTGCTCATGATCGGG
GATAGCATTTGTCGCATCATTCAGGTGTGGGGCAAGCAGGGGCGGAATGG
GGGGTCTAGCAGCGGTGAGTTCTGAAATCTTGTGGCGGTCGTCCTACAGG
AGGAGTATTGGTGGGTAGGAACGGGGGGCATGAGAGGGGTATTGCTGCAG
GGGTGGATGTCGTTGCGGCTGGGTGCCAAACAGGAGATGGTGGAACGAGG
TGGGGATCCTAG

Coding sequence (CDS) from alignment at Scaffold_647:249416..261077+

>EsuBft1285_2a-0001 ID=EsuBft1285_2a-0001|Name=EsuBft1285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_647:249416..261077+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCTGTGTGTCAAGCCGACAAGACCAGTCAAGGCCAAGCAAGTGT
ACGTGGTGGCCAGGACGCGACTGCTTCGTCCAGGGAACAGCAGCAACGCC
AGCATGCTGAAGACGGCGAAAATGTGGCACATCAACAACCCGATAACCGC
ATGGCGGCAGCCATGAAGAGAGGAGGCATCATGGGCTGGGGATCCTACTT
GACGTTCGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCC
TCAAGGAGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGCCGACAT
CTCTATGACATGCTCCGCCGCAACTGGGAATGGGAGAGGGCCAGGATGGG
CGAAGACAGCGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGA
GGGCTCTGGTGGCCACGTTCAAGTGGCGACTGACGCTAACAGCGTTGCTC
ATGATCGGGGATAGCATTTGTCGCATCATTCAGGTGTGGGGCAAGCAGGG
GCGGAATGGGGGGTCTAGCAGCGGGGTGGATGTCGTTGCGGCTGGGTGCC
AAACAGGAGATGGTGGAACGAGGTGGGGATCCTAG