EsuBft1285_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1285_11a-0001
Unique NameEsuBft1285_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:347037..348216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1285_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length118
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_11aEsuBft1285_11aEctocarpus subulatus male Bft15bgeneScaffold_647 347037..348216 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_11a-0001-exonEsuBft1285_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 347037..348216 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_11a-0001-exonagat-three_prime_utr-2662Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 347037..348036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_11a-0001-cdsEsuBft1285_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 348037..348216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_11a-0001EsuBft1285_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 348037..348216 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1285_11a-0001 ID=EsuBft1285_11a-0001|Name=EsuBft1285_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1180bp|location=Sequence derived from alignment at Scaffold_647:347037..348216- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTTGGAATCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCTCACCGACG
CTAAATAGCGCCTCCAACATAGGCTCGTAGTCTAGATCCAAGTTCATACC
TCCTGGTACACGTACCCCAGTCTTGTGCCTGGCGCTCTGCTTAGTAAACA
CCCAGACGTCCCCAGACCACCCAATTTATCATCTCCGAAGTCCCGCGGTA
CAGGCTACTTTTCTCCTGGGAGGTCATTTTCACCACAATAAGTTCAGGGA
CGACTTGCATAGCCTAAGATCCTACTCACACGCCGGGATGGGGCGTACAC
CAACGTCCAGCTTCGCATGTACGCTCCACCATGGGTTGCTACCCCACTTA
CGCTCCCGAGTAGACCTATCTGCCGAAAGTTTGGCCAACAATTCCTTACT
GCTTTGTACTCGCCTCGCTCCAATCGAAACAATGCATTGTGCGTGCCGCA
CATCTAGCTCCGCAGTTTTTGCGTGGTTGGTCTGGTCGTTCAGCTTGCTC
AACGTGAGTAATAAGCTTTGCTTTGATGGCTCTATGTGTAATTGATCCAC
TTCAATCAACGAGCACCCCCCCCCTTCCACCGTCCGATCCATTTTGGATT
TCACGCCGGAGAGTTTTGGGGTGTCTTAGCTCTGAGTCCTCCACCGCCCA
ACGGGGGACTTGAGTATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTACTGCATTGTCGAATTGTC
CCCTCACTATAGCTACTGTGGATTTTTAGTATACAGCTATCCTTACTCAT
CGCGTCTATGTGTCCGGCAACCTCCAATACAAATCAACCTGTGAGGTTTC
GGTATGCAGCTTTCTTCACTCAACGCGTCTATGTGTCCGGCAGTCGCAAA
CGTCACTCAACCCGTTCGGTCTCAATATGC
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protein sequence of EsuBft1285_11a-0001

>EsuBft1285_11 ID=EsuBft1285_11|Name=EsuBft1285_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MSLGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPT
LNSASNIGS
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mRNA from alignment at Scaffold_647:347037..348216-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1285_11a-0001 ID=EsuBft1285_11a-0001|Name=EsuBft1285_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1180bp|location=Sequence derived from alignment at Scaffold_647:347037..348216- (Ectocarpus subulatus male Bft15b)
ATGTCCCTTGGAATCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCTCACCGACG
CTAAATAGCGCCTCCAACATAGGCTCGTAGTCTAGATCCAAGTTCATACC
TCCTGGTACACGTACCCCAGTCTTGTGCCTGGCGCTCTGCTTAGTAAACA
CCCAGACGTCCCCAGACCACCCAATTTATCATCTCCGAAGTCCCGCGGTA
CAGGCTACTTTTCTCCTGGGAGGTCATTTTCACCACAATAAGTTCAGGGA
CGACTTGCATAGCCTAAGATCCTACTCACACGCCGGGATGGGGCGTACAC
CAACGTCCAGCTTCGCATGTACGCTCCACCATGGGTTGCTACCCCACTTA
CGCTCCCGAGTAGACCTATCTGCCGAAAGTTTGGCCAACAATTCCTTACT
GCTTTGTACTCGCCTCGCTCCAATCGAAACAATGCATTGTGCGTGCCGCA
CATCTAGCTCCGCAGTTTTTGCGTGGTTGGTCTGGTCGTTCAGCTTGCTC
AACGTGAGTAATAAGCTTTGCTTTGATGGCTCTATGTGTAATTGATCCAC
TTCAATCAACGAGCACCCCCCCCCTTCCACCGTCCGATCCATTTTGGATT
TCACGCCGGAGAGTTTTGGGGTGTCTTAGCTCTGAGTCCTCCACCGCCCA
ACGGGGGACTTGAGTATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTACTGCATTGTCGAATTGTC
CCCTCACTATAGCTACTGTGGATTTTTAGTATACAGCTATCCTTACTCAT
CGCGTCTATGTGTCCGGCAACCTCCAATACAAATCAACCTGTGAGGTTTC
GGTATGCAGCTTTCTTCACTCAACGCGTCTATGTGTCCGGCAGTCGCAAA
CGTCACTCAACCCGTTCGGTCTCAATATGC
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Coding sequence (CDS) from alignment at Scaffold_647:347037..348216-

>EsuBft1285_11a-0001 ID=EsuBft1285_11a-0001|Name=EsuBft1285_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_647:347037..348216- (Ectocarpus subulatus male Bft15b)
ATGTCCCTTGGAATCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCTCACCGACG
CTAAATAGCGCCTCCAACATAGGCTCGTAG
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