EsuBft1285_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1285_10a-0001
Unique NameEsuBft1285_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:337861..341258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSW6
ProteomeIdEsuBft1285_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length86
Hectar predicted targeting categoryother localisation
Evalue9.57e-83
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001640.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_10aEsuBft1285_10aEctocarpus subulatus male Bft15bgeneScaffold_647 337861..341258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_10a-0001EsuBft1285_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 337861..341058 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_10a-0001-exonEsuBft1285_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 337861..337998 -
EsuBft1285_10a-0001-exonagat-exon-71537Ectocarpus subulatus male Bft15bexonScaffold_647 338330..338528 -
EsuBft1285_10a-0001-exonagat-exon-71536Ectocarpus subulatus male Bft15bexonScaffold_647 339144..339182 -
EsuBft1285_10a-0001-exonagat-exon-71538Ectocarpus subulatus male Bft15bexonScaffold_647 340769..341258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_10a-0001-cdsEsuBft1285_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 337861..337998 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1285_10a-0001-exonagat-five_prime_utr-1771Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 341059..341258 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1285_10a-0001 ID=EsuBft1285_10a-0001|Name=EsuBft1285_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=866bp|location=Sequence derived from alignment at Scaffold_647:337861..341258- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGTGACACAGACACGTACCTCTTGATCTCTCTGTTCGGAGACCACGC
GCGGCTCGGAGACATTGCCGGTGCATCGGTTTGCTAGATTCCGGGTGTAC
ACCACACAACAAGAGGTAGGGCAACACGCAACGTTTGCGTAGAGGAGGGT
CCCGCCGACGTACGTGTTGTGCGTTGAGGTTGACGTGGGCTGTCCAGCAA
ATGGCTTCCGTGCGTCAAGCCGACGAGGCCAGCCAAGGCCAAACAAGTAT
AGGTGGTGGTCAGGGCCCGACTGCTTCACCCGGGGAACAGCAGCAACACG
AGCATGTTGAAGAGGGCGGCGACGTTGCCCATCAACCCGGCAACCGCATG
GCGGAAGCAATGCAAAGGGGAGGCATCTTGGGCTGGGGCTCCTACTTGAC
GTTCGCCTGGGCCGGACCTTTCCTCAAGCTCGGCTCCACTATCACCCTCA
AGGAGGAGCACCTTGAGGGAATCTACCACAAGCACGAGAGCCGGCGCCTC
TATGACAAGCTTCGACGCAACTGGGAATTGGAGAGGTCCAAGATGGGGGG
AGACAGTGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGAGGG
CTCTGGTTGCCACGTTCAAGCGGGGACTGGCGCTAACAGCGTTGCTCATG
ATCGGGGATAGCGCCATCCATATCCTTCAGGTGGGGCAAGCAGGCGGAGA
CGGGGGTTGGGGGGGTGGGGGGAGAGAGGCGTTATCGCTGGGGTGGCTGA
TCGGATACTTCGACGACGACAGCTCGGAGAGTTGGGAGGGCTGGGCCTAC
GCCTCGGCCGTCGTGCTGGGCGGGGTGTTGTTCAGGCGAGCTGATGCTAC
TTATTCTGTCCTTTAG
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protein sequence of EsuBft1285_10a-0001

>EsuBft1285_10 ID=EsuBft1285_10|Name=EsuBft1285_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQPGNRM
AEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHESRRL
YDKLRRNWELERSKMGGDSEHSRGRRKGTTLLRALVATFKRGLALTALLM
IGDSAIHILQVGQAGGDGGWGGGGREALSLGWLIGYFDDDSSESWEGWAY
ASAVVLGGVLFRRADATYSVL
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mRNA from alignment at Scaffold_647:337861..341258-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1285_10a-0001 ID=EsuBft1285_10a-0001|Name=EsuBft1285_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3398bp|location=Sequence derived from alignment at Scaffold_647:337861..341258- (Ectocarpus subulatus male Bft15b)
CGAAGTGACACAGACACGTACCTCTTGATCTCTCTGTTCGGAGACCACGC
GCGGCTCGGAGACATTGCCGGTGCATCGGTTTGCTAGATTCCGGGTGTAC
ACCACACAACAAGAGGTAGGGCAACACGCAACGTTTGCGTAGAGGAGGGT
CCCGCCGACGTACGTGTTGTGCGTTGAGGTTGACGTGGGCTGTCCAGCAA
ATGGCTTCCGTGCGTCAAGCCGACGAGGCCAGCCAAGGCCAAACAAGTAT
AGGTGGTGGTCAGGGCCCGACTGCTTCACCCGGGGAACAGCAGCAACACG
AGCATGTTGAAGAGGGCGGCGACGTTGCCCATCAACCCGGCAACCGCATG
GCGGAAGCAATGCAAAGGGGAGGCATCTTGGGCTGGGGCTCCTACTTGAC
GTTCGCCTGGGCCGGACCTTTCCTCAAGCTCGGCTCCACTATCACCCTCA
AGGAGGAGCACCTTGAGGGAATCTACCACAAGCACGAGAGGTACGAAGCG
GGAGACTATCTTTGCATGTATGCGTACAACCCAAATTTCTGGAAATATAG
GCAGTTGATCCGTCGGTTGGCCCGCCCCGAGTCTCCTTTCCAACGGGTGA
GTTTGTAATGTACAATGCACACACACCTCTCGTGCGCTCTGTTGTGCCAA
TTGTCGGCATGCGCTTTACCGTCGGCACGATGACTAGAATCCACCGGCGG
ATATCCCCGACATGTTGCAGCTGCAACGGCGTTTGCTGTTGTTGCACCAA
TGCTTGCGTGGGAACGGCAGTGCGTATCAGATCTTGGATTTGTTCACGGA
AGCCGGGGATGCATTGCCTGCGTCCCCCGTCCTCCTGGGTCGCGTTCTTG
TCAATGAAAACCGACCAAACGGTTGATGGAGCGTGCAGTCGCGGAAAGCC
TTTCCGCTTGGAGGGGGATGCCACGTCTTAGTCGTGTACATCAGAGATGT
CGTGGCTTGGCCAAGTGGTACTATGACGAGAGATTTTCTCCCGACGGGAA
AATGACAGCGGAGCGCGGAGAAATCGGACCGCCAACTCCCCGTGCAATAT
TCCGACGCTGTAAGGTTTTTTCTATTCATGCGCGTTTCTATGCATCGCGA
GATCGCGAGGTTGACCACTGCTGTAGAAGTATATATTCCCGTGCCACTCT
CGGCTACAATGGAGTAGAGAAACGCGAAGAAGGGGATGACGAGGCTCACG
GAAACCAGCGATGATGTTCCGCTGGTTCTGCGACAGCTGTAGCAGCACGG
CCGAAACGTGGATCGCACAAGCCCCGTCCGCCAAGAGTCGCGCAACCACA
TTCCCCGGGGAGATACCGTAGATTGCATAAGACATTACCCCCCCTCGACC
GATTGTCGGAGCCCAGTTGCCAATGCAGCAAACTCAGTGATGGCCGTGCC
GAGACCTGGCGGTGTTGGAACCAACCTTGCCTAACACGGAGTACTGCTGT
ACAATTTTTTGTTGTTGCAATTCTTCGTCGCGAGTATGTAGTTGGGCCTT
AAAATCGGTCCAGGGAGTGGTACCTTTGAGCAACCTACGGCATGCGCATA
CCCTCCTAGAAGGAAACGCGAGAGCCCGATCCGTTACAAAGACCGCGCGA
TGTTTGCTACGTGCCTGCGTCTCGGGAACCGACTGACCACTGCTAATCTC
CCGCCCTTGTTCTTCCATTGGATCGTTTCGTTGTCATTCAAGCTCCCCAC
ACCCTTCTGCACACCTCCCCTCACCTCTCGGTTGTGCCCTGTTTCTCATT
CCATTCCGCGAGTTTTGTCTACTACACCCCCCCGTGTGCGCCCCACCCCT
TCGTCCTCCCGCCCCCGCGCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGTAATTGTCGATTCAC
CTCTCTCACGGTACACACCTCCATGCCGCATTTGTGGGGTTTTCGCTTGG
GATAACCGGACGACGCCCAAACACAGCCGGCGCCTCTATGACAAGCTTCG
ACGCAACTGGGAATTGTGAGTGTCAAAATCGTGCTTTTGGAGGGATTAGG
ATGCTACTTAAACTCCATAAAGATGACGATCATGATTGCATCTCTGTGAC
ACGGCGGAGTGCAGACGAGAGGAGGCCGGCCCGACAAGCCTCCATATGTT
GACGCGACCATAACCTTAAGCGGGGGGGCGGAGGAAGGGTATCCGCACTC
GGTTGGCCGAAACAGGGGTGCTTCGGTGAAGGTTTTGGGTTTGGTGAAGC
GGATTCTCGGTCTACCCTCTCATGGTTGGCACGTTCCTTTGTTCATGTTC
CTTGCCATCATCGCCTTCCTTCTCCGTTTCTCTCTCACGTGTGCTCGATC
GAGCGTTCCGTGGGTGCTTTAGGAGCAGGTGTGGGCTCTCACACCTCGAA
ATCTGTTGCAGCATACCACTTGCAAGATGATTGACTGACCGCGCTGTTAG
TTTGTAGCGCTTTTCCTCTGATGAATCTCAAGCAGCACTACTGCGTTGTA
GTGCTCCAGGTACATGTGATGGTAGTCCCTTTCCAGCTTGGTGGTGGCGG
GGGGGTTCTGCGGGACCACGCCGGAAGTTTTGATTGGTGCCCGCTGTGCC
GCCCCCAACCGTCACATGGGTCATGTGTAGGGAGAGGTCCAAGATGGGGG
GAGACAGTGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGAGG
GCTCTGGTTGCCACGTTCAAGCGGGGACTGGCGCTAACAGCGTTGCTCAT
GATCGGGGATAGCGCCATCCATATCCTTCAGGTGGGGCAAGCAGGCGGAG
ACGGGGGTTGGGGGGGTGGGGGGAGAGAGGTTGGCGGCGCAATCTTGTGG
CCATTGTCGAGTAGCGGCTTGAAGGGATGGGGAGGGCATTGTTGCGGGCT
TGGATGCCGTCGCGGCTATGTTCCCAATAGGGCATCGTAAAGGGAACAGG
ACGGCTCTGCATCTTCTTCAGAGCCTGGGGTCCTGGGGGGGGGGGTCTTT
CACCGCGTAGGTGGCACACCAGGGATGCCCCGAGGCTCTCTCTTAGTGTT
CTGGCCGCCGGGTGAAGGAGCCTCCCAATACCCCTACCCTGAAACATTCC
TCTTAACCCCGCGCCTTGTCGCTGTAACTCGGGACCGACCCCCTGGGTGT
AAACAAGCAGGCGTTATCGCTGGGGTGGCTGATCGGATACTTCGACGACG
ACAGCTCGGAGAGTTGGGAGGGCTGGGCCTACGCCTCGGCCGTCGTGCTG
GGCGGGGTGTTGTTCAGGCGAGCTGATGCTACTTATTCTGTCCTTTAG
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Coding sequence (CDS) from alignment at Scaffold_647:337861..341258-

>EsuBft1285_10a-0001 ID=EsuBft1285_10a-0001|Name=EsuBft1285_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_647:337861..341258- (Ectocarpus subulatus male Bft15b)
ATGGCTTCCGTGCGTCAAGCCGACGAGGCCAGCCAAGGCCAAACAAGTAT
AGGTGGTGGTCAGGGCCCGACTGCTTCACCCGGGGAACAGCAGCAACACG
AGCATGTTGAAGAGGGCGGCGACGTTGCCCATCAACCCGGCAACCGCATG
GCGGAAGCAATGCAAAGGGGAGGCATCTTGGGCTGGGGCTCCTACTTGAC
GTTCGCCTGGGCCGGACCTTTCCTCAAGCTCGGCTCCACTATCACCCTCA
AGGAGGAGCACCTTGAGGGAATCTACCACAAGCACGAGAGCCGGCGCCTC
TATGACAAGCTTCGACGCAACTGGGAATTGGAGAGGTCCAAGATGGGGGG
AGACAGTGAGCACAGCCGCGGCAGGCGCAAGGGCACCACCCTCCTGAGGG
CTCTGGTTGCCACGTTCAAGCGGGGACTGGCGCTAACAGCGTTGCTCATG
ATCGGGGATAGCGCCATCCATATCCTTCAGGTGGGGCAAGCAGGCGGAGA
CGGGGGTTGGGGGGGTGGGGGGAGAGAGGCGTTATCGCTGGGGTGGCTGA
TCGGATACTTCGACGACGACAGCTCGGAGAGTTGGGAGGGCTGGGCCTAC
GCCTCGGCCGTCGTGCTGGGCGGGGTGTTGTTCAGGCGAGCTGATGCTAC
TTATTCTGTCCTTTAG
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