EsuBft1274_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1274_5a-0001
Unique NameEsuBft1274_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:390306..392151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI39
ProteomeIdEsuBft1274_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length44
Hectar predicted targeting categoryother localisation
Evalue7.32e-53
EggNOG OGs2D0G2@1|root,2SE3H@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1274_5aEsuBft1274_5aEctocarpus subulatus male Bft15bgeneScaffold_390 390306..392151 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1274_5a-0001-exonEsuBft1274_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 390306..390567 +
EsuBft1274_5a-0001-exonagat-exon-87914Ectocarpus subulatus male Bft15bexonScaffold_390 391074..391143 +
EsuBft1274_5a-0001-exonagat-exon-87913Ectocarpus subulatus male Bft15bexonScaffold_390 391798..391891 +
EsuBft1274_5a-0001-exonagat-exon-87915Ectocarpus subulatus male Bft15bexonScaffold_390 392134..392151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1274_5a-0001-cdsEsuBft1274_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 390306..390567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1274_5a-0001EsuBft1274_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 390306..392151 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1274_5a-0001 ID=EsuBft1274_5a-0001|Name=EsuBft1274_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=444bp|location=Sequence derived from alignment at Scaffold_390:390306..392151+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTACAAACTGTTTCTGGACGAAGACGTGGTTCGGCACCTCGAGGA
GTATGATGCGCTCGCTATCTTAGAGTGGGATGTTGTCATGGCTCACGCTT
CGAGCTTTGCAAGGCTGTACAATGCGGCGTTCTCCTCGTCTGAGAGGTAT
TGGGTGAAGGGGAGCACGCTGACTGGAACTGAGTTTCATCAAACGGCAGC
ATTGACGGAAATGTGGCACATCCTCGGACATCTTAACGGAAACGCCCTTT
GTGAGTTCTTGGATAACAACACGGACCCGGCGTTTGTTGAGTTCGTGAAC
TTCACGTTCTGCCGATGGGAATACACGTTCTCGTACGACGTGGCGCTTTG
GGCAACGATATCGGACTTTCCCTACAGCTGGCCGCTTTGGCAGCGATACT
CTCCGCGCTTCATTTCAACTGACCTGCGGACCACAGTCCGTTGA
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protein sequence of EsuBft1274_5a-0001

>EsuBft1274_5 ID=EsuBft1274_5|Name=EsuBft1274_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MFYKLFLDEDVVRHLEEYDALAILEWDVVMAHASSFARLYNAAFSSSERY
WVKGSTLTGTEFHQTAALTEMWHILGHLNGNALCEFLDNNTDPAFVEFVN
FTFCRWEYTFSYDVALWATISDFPYSWPLWQRYSPRFISTDLRTTVR
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mRNA from alignment at Scaffold_390:390306..392151+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1274_5a-0001 ID=EsuBft1274_5a-0001|Name=EsuBft1274_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1846bp|location=Sequence derived from alignment at Scaffold_390:390306..392151+ (Ectocarpus subulatus male Bft15b)
ATGTTCTACAAACTGTTTCTGGACGAAGACGTGGTTCGGCACCTCGAGGA
GTATGATGCGCTCGCTATCTTAGAGTGGGATGTTGTCATGGCTCACGCTT
CGAGCTTTGCAAGGCTGTACAATGCGGCGTTCTCCTCGTCTGAGAGGTAT
TGGGTGAAGGGGAGCACGCTGACTGGAACTGAGTTTCATCAAACGGCAGC
ATTGACGGAAATGTGGCACATCCTCGGACATCTTAACGGAAACGCCCTTT
GTGAGTTCTTGGGTGCGCCAACCGCCCGCGAAAAAGTCCGAAGTATCCGT
TTCTACAGTGACACCGTCCCATCACCTCGTTTTTCCAACATTTGAAGTTC
GCTACTCCCCCGGAGCGTCGAGTGTCGAACTGTACAGGGTTGCTTCAGAT
TTCCCTTCGTATGGCTGGACGCAAATTTCGTTCTTGTAGTTACTTTGACT
CGCCCATCTTCTTCGCTCTAATACTGTTACTTCCACAGTTTATGAATAAT
TTTTAAACGCCTTGTTGCGTACCAAACCCATCGGAAGGTCGGTTGTGGGT
TAGGAGGGGAAAGAGCGTGGGTGTCGGACCAATTGCACGTGGAATTTTTC
CCAAGTCATGAAAGGCAGTTCCTCGAGACCCCCCATACCTTCTACGAGGT
ATTAGCATCATAGACGTCAAACAGATTGATTTACTTGTTTAGCTGGTTCA
CACCCGCCACCGCAAAACGTGTGCTACCTGCATTCTCCGCCCCACGTCAA
TTCCGCTTGATTGGACAGATAACAACACGGACCCGGCGTTTGTTGAGTTC
GTGAACTTCACGTTCTGCCGATGGGAATACACGTTCTCGTAAGTTCATGC
TCACAGAACTTGGATGCATTCATTGAAGTATGAAAGGTTGAACGAGTTTC
ATTACCAGCTCGTACCTCGACCGCTACCAAGTGGTTCATGCTCAACGCCG
TGTGTTTGTGCATCATCGCCAACACTTACCGCCCCATTTTGTCTTGTTGA
CCATATTGAGCATACTTCACGCTGATCGCTCCTTCGACACGTGTACGAAT
AATCCCTACCTCTGAAATATCGCGTGTACATGTGCGTCCGGTATGAAGAG
GTGTTTTGTACAATCTTAATTCCGGAGGTCCTGGGTCCGCGATTATTTGG
TGTTTGTGGAACTCATAGAGATCCTGGTATCGATGAGGAATTACAGAAAA
GGTGTATCTGATGGTTGTGTGTCGATATTTATTCCACAATGAGCGAGGGA
AACCCCATGTTTCGCGAGGACCAGGACATTCCGTTTGCCGTTCTGAACAA
TCTTCTCGCATAGTCTAGTGGTATGTACGCGACGATGCCAAATTGTATTG
GATGGTGAGCTGCAGAGAGCGAGATAGCGAGNGCATGACTCTTCGCATGA
AGAAAGAAGGGAATCCAACAAATGTCATTGTTGCTAATGTGGTGTATTCA
ACATTGAGATTCTCTACACTGAAAACCCAATGTTAATTGCAGGTACGACG
TGGCGCTTTGGGCAACGATATCGGACTTTCCCTACAGCTGGCCGCTTTGG
CAGCGATACTCTCCGCGCTTCATTTCAACTGACCTGGTGAGATCAACATC
GTGTGCGCATAGACGACGTGCAAATTCTTTCTCGCTTCGTTGGGAACGCA
AAGCACTCGCTGAGACTGTCATTTATGGTCGCACGGGAAACCTGTACACT
GTAACTGGTCATTCAGCCGGGAGCTGCTTGCCCCCGACCAACATGTACGC
GGTTGTTCGATTAAGCCCCCGTACATTGCCCGACAACTTTCACACGTTGT
TGGGCATTGATGCCGCGTATGTATGCAGCGGACCACAGTCCGTTGA
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Coding sequence (CDS) from alignment at Scaffold_390:390306..392151+

>EsuBft1274_5a-0001 ID=EsuBft1274_5a-0001|Name=EsuBft1274_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=444bp|location=Sequence derived from alignment at Scaffold_390:390306..392151+ (Ectocarpus subulatus male Bft15b)
ATGTTCTACAAACTGTTTCTGGACGAAGACGTGGTTCGGCACCTCGAGGA
GTATGATGCGCTCGCTATCTTAGAGTGGGATGTTGTCATGGCTCACGCTT
CGAGCTTTGCAAGGCTGTACAATGCGGCGTTCTCCTCGTCTGAGAGGTAT
TGGGTGAAGGGGAGCACGCTGACTGGAACTGAGTTTCATCAAACGGCAGC
ATTGACGGAAATGTGGCACATCCTCGGACATCTTAACGGAAACGCCCTTT
GTGAGTTCTTGGATAACAACACGGACCCGGCGTTTGTTGAGTTCGTGAAC
TTCACGTTCTGCCGATGGGAATACACGTTCTCGTACGACGTGGCGCTTTG
GGCAACGATATCGGACTTTCCCTACAGCTGGCCGCTTTGGCAGCGATACT
CTCCGCGCTTCATTTCAACTGACCTGCGGACCACAGTCCGTTGA
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