EsuBft1269_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1269_4a-0001
Unique NameEsuBft1269_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:615654..620802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2850.Phatr43157
ProteomeIdEsuBft1269_4
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsIPR000425
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR023271
Ownerapollo_admin@sb-roscoff.fr
Noteaquaporin-1 os:mus musculus gn:aqp1 pe:1 sv:3 [Automatic annotation]
Nb exon6
Max annot lvl2836|Bacillariophyta
Length1679
Hectar predicted targeting categorysignal peptide
Evalue2.57e-19
EggNOG OGs2CGDK@1|root,2SA3Q@2759|Eukaryota,2XANQ@2836|Bacillariophyta
Ec32 ortholog descriptionMajor intrinsic protein
Ec32 orthologEc-19_003710.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionBelongs to the MIP aquaporin (TC 1.A.8) family
COG categoryP
Cross References
External references for this mRNA
DatabaseAccession
GO0071702
GO0033554
GO0065010
GO0071214
GO0043231
GO0050891
GO0071310
GO0071241
GO1901701
GO0050794
GO0006833
GO0003014
GO0048518
GO0006820
GO0055085
GO0098590
GO0048513
GO0015077
GO0015672
GO0044422
GO0042995
GO0022838
GO0071705
GO0046903
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4aEsuBft1269_4aEctocarpus subulatus male Bft15bgeneScaffold_370 615654..620802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4a-0001EsuBft1269_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 616528..620675 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4a-0001-exonagat-exon-23424Ectocarpus subulatus male Bft15bexonScaffold_370 615654..616662 -
EsuBft1269_4a-0001-exonagat-exon-23427Ectocarpus subulatus male Bft15bexonScaffold_370 617184..617303 -
EsuBft1269_4a-0001-exonagat-exon-23428Ectocarpus subulatus male Bft15bexonScaffold_370 618114..618308 -
EsuBft1269_4a-0001-exonagat-exon-23426Ectocarpus subulatus male Bft15bexonScaffold_370 618924..619010 -
EsuBft1269_4a-0001-exonagat-exon-23425Ectocarpus subulatus male Bft15bexonScaffold_370 619346..619450 -
EsuBft1269_4a-0001-exonEsuBft1269_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 620640..620802 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4a-0001-exonagat-three_prime_utr-2528Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 615654..616527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4a-0001-cdsEsuBft1269_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 616528..616662 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1269_4a-0001-exonagat-five_prime_utr-1683Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 620676..620802 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1269_4a-0001 ID=EsuBft1269_4a-0001|Name=EsuBft1269_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1679bp|location=Sequence derived from alignment at Scaffold_370:615654..620802- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAACCCCAGCGGGGGCCGCTCCCTTGTTTGCCGAGAGCTAGCCGAGAGA
GACCGAGACGCACACAAGGGCATGCCAGTCTGCTCTACCTCTGCTGTACA
GTTTTCTTCGCAACAGCCGCCACCATCATGCCATCTCAAAGGACTCTGGG
CATTTTCCTCCAGGAGGCCTTCGGGTCTTTCGCTCTGCTGATGATGGTGT
TCCCGTTCAACAGCTTTATGGGCGACACGTGGTCCGCCTGGATTCAGCAC
TTCTTCTCCGTCATGATCACGGACTACACCAACGGAGGCGCCCAAGTCAA
CCCCGCTATGTCGGTCGGCACTTTCTTCTACGGCTGGAACGACGAGTCGT
CTTTGGTGGTCCGCATCGTCGGACAAATGGTGGGCGGCTTCTACGCGTTC
CCCATCATGGCGAAGCTGCTCCCCAGCTACGCCACGAGCAGTATGGGCGG
GCCCACCCTGGCGGCGGGCGCTAGTACGGGTCAGGGCATGGCTTGGGAGT
TCGGCTCGACGTTCGCGTTGATCCTGATCGTGTACGTCGCGGCCACGCAG
ATCGGTCTTCCTGGACAGCGACCGGTGATCGCCACGGGCATCCGCGCGCT
TATCCACTTGAGCGCTGTCAAGGGCGGGAAGACTGGGCCCGCAATGAACC
CCATGATCGCGACTGCTTGGGCGGTGTACGACAAGTCTGTCACCATGAAC
CAGCAGTGGTTCCTGGTGTACTGGGTCGCTCCTTGCGCCGCGGCGGTGGC
GGGCACCCTGCTGTGGAAAGTTCTCGAGCCCAAACCCAAGGCTAAAACCG
ACTGAGCTCACGTGGAGTTTTGTGGGGATGGTAGGGGCGAGGGGGGGAGA
CCGATGCCTGGAGCATCTAGACGGGACGCTGTACGGGGAGGACAGCATCC
GAACAGCAGATTGGGAAGGGGAAACTTTTCCTCACGATTTTCCGCGTCTT
TCTGATCATGTCCGATATCGTTTTTCCCTCATGTGTAGTCGGTGGTGCAT
CCGTTTTCACGCACGTTGTTCTCTGCCCGTGTGCAAGGCCTTTTGAGCAC
GCATGCAGCAAGGAGGGGTGGCATGTGAGTTGTGGCGGGAGTGTTTCGTT
TTTAGAGTATCCGGCCCGCATTTTACCGCAGTCAGTCGCGCTATGCATAA
CAGTATTACTTTCATATTTTTCATGATGCAGTTGCCTCCCGTGTGTCATA
CTCGTACTCGGAGTGTCTTGGTGTTTTCTCAGTCAAAATAGAGTTCGTTA
GGGTAGAGTTTTGGGTAGCCTCGTGTTCTGGATAGGCACCCGTCCTGCAG
CAGCATTCGACCTTGTTGCGGCTGCTGTGTGTGACGTCACGAGTTGCGTA
GTGGAACGAATTGGACGACACTGCACTGCGGTCGGAATGTTTGTGTAAGA
GCCACGTAGCGCAGCGCACCTGGCGGTAGCAAACCGTCATTCGTGTTTTT
TACCGGCAGCACGCGTTGGCATTCATGGGCCGGGGGTACAGTGGACCTTC
CCCTAAGTTCTGCGGGAATGCCTCCGCCGCGACACCGAATACATGATTTC
GCTGCGGCGTTGACGAGGTTTCACTTGTTTTTGTCTATTTTGTTTTCTTG
CCTCGTGTGTTTGGGAACGACGTCATCACTGCAATATTTTTTTTTTCGTC
GACGACATTTGACCGCCAACACGAAACGG
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protein sequence of EsuBft1269_4a-0001

>EsuBft1269_4 ID=EsuBft1269_4|Name=EsuBft1269_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=225bp
MPSQRTLGIFLQEAFGSFALLMMVFPFNSFMGDTWSAWIQHFFSVMITDY
TNGGAQVNPAMSVGTFFYGWNDESSLVVRIVGQMVGGFYAFPIMAKLLPS
YATSSMGGPTLAAGASTGQGMAWEFGSTFALILIVYVAATQIGLPGQRPV
IATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMNQQWFLVYWV
APCAAAVAGTLLWKVLEPKPKAKTD
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mRNA from alignment at Scaffold_370:615654..620802-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1269_4a-0001 ID=EsuBft1269_4a-0001|Name=EsuBft1269_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5149bp|location=Sequence derived from alignment at Scaffold_370:615654..620802- (Ectocarpus subulatus male Bft15b)
CAAACCCCAGCGGGGGCCGCTCCCTTGTTTGCCGAGAGCTAGCCGAGAGA
GACCGAGACGCACACAAGGGCATGCCAGTCTGCTCTACCTCTGCTGTACA
GTTTTCTTCGCAACAGCCGCCACCATCATGCCATCTCAAAGGACTCTGGG
CATTTTCCTCCAGGTACAATCGCTTTCTCTGTTATGGGTGGTAAAACTGC
TGTCAATTCCTTGGAATTTGAGTTCCCGAACCTTTCCTGCGTCTCGTCTC
CAAGTCGGGGCGCTCTGCGATAGACATCTCGCAGCAGAGTGTGTTCTTTT
CTCGCAGCAGGTGATTGTACACTGGTTCGTTGAAGAAGGAGATGTTTCCG
TCTATGCCGTGGGCTTCGGGTTCGGGAAACGAATTTGGGGTGGGAATGAA
CCCACCCATGGTTACTGCCTTTGCCGCAGTCGCATGGCTGAACGTAAGTA
CACATGTTGCCTTGGAGCTCTGAGCACGTTGTATGTGCTTTCATCCTGGT
CTTCTTCACGCACTCGCTGTAGATTAGTCTCGCCTTACGGCTCGCAAAGC
ACTCCAATGATCATATTCACCGGACCTTAGGCACGCAGCTACCGCTCAAG
ACTCTTTGCACCGCGACCGACACCTCTATATGAACTGCTTGCGAGGGGGG
GAGACGCCAGCAAGCATTGAACACAAGATAATCGATCTCAAGCTGTAATC
TAGTTACCATCGCTTCGCCAAGCATTGTGGTCGCGGAACCGCCAACTTCC
TTGGTTTTCAGCACCTTCGTGTTTTCTCTTCTTCTGGTCGGAGTTCGTGG
CATCACAGGATTCAGGAAAAAGATAATCGACGCCGTTAAGTCTACTCCTC
CTTTCAAGTACACTGGAATTGGGGGGTGGGTCATGTCGAGGCAACCAATC
GCCTTCACAAGCATCGTGGACCCATCATCACCATTCTGGACTATCTCGCT
ACCAGGGGGCGGTGCGGCCATGTCACACTTCCATCCTTTTCATCAGTCGT
CTGACGAGTGGCGCCTGAGCGTGGAATCCATCCCATGCAAACCATCGCTT
GACGATGTTCTGGCTTTTTTCTTTCAAGGTCAACTAATCTAAACTCGCAG
CGCTATTTTAGTAGGGATTCCACCTTGAGAGCTAATCGCTTGCCACCCGA
CTACAACCAATATTTGTCCTAAGCAGGAGCGGGTGTAGCTTGGCCTTGTC
GTTTGTCGAGGGTGTCATCTACACCCCGAGGGTGTGCCATGTTCTTGGTT
TTTCCATCGTCTTGTGCCCTGTTTGCCTTTGTTTCTGAACACCCTCTAAT
TCACCCCCATTCGATGATTGCTTCTTCGACATGTGCGCTTGCCGCGTTAC
AGGAGGCCTTCGGGTCTTTCGCTCTGCTGATGATGGTGTTCCCGTTCAAC
AGCTTTATGGGCGACACGTGGTCCGCCTGGATTCAGCACTTCTTCTCCGT
CATGATCGTGAGACCAATCACAGCACTTGCCTCGCGGCAGCAACAGTCAT
GTGCAGCAACAATAAAATAGCTGTGGTGTTGTAGCTGATCTGAGTGGTGT
TCTAGAGAACTCAGAGGCGCAATCAGAGGCGCTTCTGGCAGAAGCAGGAA
CATGCGACCATCTGATAAGACTTATTGTTCTGTATATCGCCGATACCGGG
GCACCGGTACATGCATCAACATGTTTCGCGTTTTCAACAAGTCGGAATTT
TTTCGATATCTTCGCTCTCATTCCATCCCCCGTCCGCACGCCCCCCCGTA
CTGCATTCTTTTCACACCGAAACCCCGGGGTTGGCCTTCCAGACGGACTA
CACCAACGGAGGCGCCCAAGTCAACCCCGCTATGTCGGTCGGCACTTTCT
TCTACGGCTGGAACGACGAGTCGTCTTTGGTACGTGCTAACAGACCGTAG
GTGACGAGTGTGTGTAATTCCTTGTACAAAGGGACGAGATTCGGAGCAGA
CGATATCAATAGCCGCCGAGGATGGTGAACTCTTGTTGAAGACGTTGCCC
TAGCGGATATTGGCCGCGTTATTTTTGGGCCGACTTCCCGTGTCCGATAC
TAGTTATTTTGGGCAGTGCGAAGAGTTAGTGCCGATATCGGTGGCATTGG
CATTGGCAAGTTCTCGGCGAGGGATTCGAGCCACACATGTATATGTTCTG
TTATGCATACGACCGATGTGGGGTTTATGAGGCACAATGATATCGTGGGC
GTTGTCGCCCAAACCACCTAGATTTTCGTTCGTGAGATGATTGGACAGCT
AGATGTCCACACCCTCGTGTTTCTTTTGTGCAACACTCGGGCTGGAGGTT
GGTTGCTTGTGAGCTGGGAGTGGTTGTCTTATTGCTGTCTCTGGCCTCGA
TGCTGTTTCTTGAATGTTTACCCACTTGTACGGCGCCCCGATTCTCAAGA
ACCAAAAACGTCCAGTGCCTCTCATGCTTCGGGTTTTGACAACCCCGTCT
CCCGGCCTTGTGGTGTGTCTTCGTCTCCGCCCGCCATGCTCCAGGTGGTC
CGCATCGTCGGACAAATGGTGGGCGGCTTCTACGCGTTCCCCATCATGGC
GAAGCTGCTCCCCAGCTACGCCACGAGCAGTATGGGCGGGCCCACCCTGG
CGGCGGGCGCTAGTACGGGTCAGGGCATGGCTTGGGAGTTCGGCTCGACG
TTCGCGTTGATCCTGATCGTGTACGTCGCGGCCACGCAGGTATGTCTCTT
GTTTTCACGAAAGCGCAGTGGTTGGACCGAGGGATCCGTGGGCGGGAACG
CCACTTCTGCTCGAAGCGTGGTCGAGTTGGGTGGATTTAGTTTCCCTCTG
GCGACAATGACCTGCCAGGCACAGGGACGTAGCGTAGCGCTGTCTTTCGC
ACCGTGGCTTGAAATTTCGGCCCCACGTCTCTAAGGCTGAACTGCAGAAT
TGCGACCGAGGTTTCCGCGACCACCCAAGACCCGTTATTTTCCGTGTTTT
GATCATCGATCTTGTGGTGGGTATGGTTATGCCACCGTCGTGGTGTTGGC
GTGCGTCGAGCGCTTCGTCCTTTGTGTGTTGAGGGTTGGCTGGAGTTTGG
AAAAAGCAGGTGTGCGGCGATGTTGACTATAATACCTAGCAGGTCAATAC
GCAGTGCTGTTTTCGTCGACATTCATCTCTTAGGAGCAAGCGGACGCGAC
GCGGCACGTTCGTCATAGTCTCCTTTCTCGTACGAAATCGCTCGGGATAT
GGGGTCCGCGAAGTGGGTGGGCGCTTTCCCAGGACGAAACAACCGTCGCC
TCACGTCCCCCGACGGATTCCTCTTGCCTACACATGATGCCATGGGCTAC
CTCTTCTCGACCCATGAGGAAGCTCTTCGGCGTGGAATAATCCAGGGGTG
CGGCAAAATATCGGTAGTGCGGACAGCAGAATTCGGCTGGCTGCATCCTT
CTCGCTGTCCCCCTTGATAGGGTCCCCAACGGTACTTCGCCCCCTTTCCT
CCATTCCTACCCTGGACTGTGTTGTTTCCGTTCGTTCCGTAATTTGAAGA
TCGGTCTTCCTGGACAGCGACCGGTGATCGCCACGGGCATCCGCGCGCTT
ATCCACTTGAGCGCTGTCAAGGGCGGGAAGACTGGGCCCGCAATGAACCC
CATGATCGCGACTGCTTGGGTGAGAGCACGGTCGTAGCAGCCATCACATT
TGCTAGTGGCGTGGGTCATAGGTACTATATGTCGTAATTATGGCGGGTGG
CGTGCGAACACCAAACTCGCAACTGCGCTGCTAGTTGAGAGCGGGACGGG
TTGGGCGTATGGCATGGCAGGCCGTCATCGCAGCTCATGCGGCGGCATCG
CCATTTTTTTTTTCCACACAATGATGACGGCTATGACGGATGTGGCCTCA
AGTTTAACATTTTCTTCGGGTCGGTATTCCAGCGATATTTTGACAAGGTT
TGGCTTCAGTCTCGCCAGGCCATCTCTATTTTTTGGCAACGCTCTTGCCC
GCGGTGCCACCCCGTCAGGCTGGCTTCCCTCCGTGCCCTGCTATGGTAGC
ATTCACCACGTGTAAAAAAAACTCCGCCCACGCAACCCTGCCCTTAACTG
AAGGAATGACCAGTGTTCCTGTGTGTATATGAGCCTGGTATCCCCTTGCC
GCTTGTATTGCCTTGTTTGTGCCGATGTGATACTCATCAGGCGGTGTACG
ACAAGTCTGTCACCATGAACCAGCAGTGGTTCCTGGTGTACTGGGTCGCT
CCTTGCGCCGCGGCGGTGGCGGGCACCCTGCTGTGGAAAGTTCTCGAGCC
CAAACCCAAGGCTAAAACCGACTGAGCTCACGTGGAGTTTTGTGGGGATG
GTAGGGGCGAGGGGGGGAGACCGATGCCTGGAGCATCTAGACGGGACGCT
GTACGGGGAGGACAGCATCCGAACAGCAGATTGGGAAGGGGAAACTTTTC
CTCACGATTTTCCGCGTCTTTCTGATCATGTCCGATATCGTTTTTCCCTC
ATGTGTAGTCGGTGGTGCATCCGTTTTCACGCACGTTGTTCTCTGCCCGT
GTGCAAGGCCTTTTGAGCACGCATGCAGCAAGGAGGGGTGGCATGTGAGT
TGTGGCGGGAGTGTTTCGTTTTTAGAGTATCCGGCCCGCATTTTACCGCA
GTCAGTCGCGCTATGCATAACAGTATTACTTTCATATTTTTCATGATGCA
GTTGCCTCCCGTGTGTCATACTCGTACTCGGAGTGTCTTGGTGTTTTCTC
AGTCAAAATAGAGTTCGTTAGGGTAGAGTTTTGGGTAGCCTCGTGTTCTG
GATAGGCACCCGTCCTGCAGCAGCATTCGACCTTGTTGCGGCTGCTGTGT
GTGACGTCACGAGTTGCGTAGTGGAACGAATTGGACGACACTGCACTGCG
GTCGGAATGTTTGTGTAAGAGCCACGTAGCGCAGCGCACCTGGCGGTAGC
AAACCGTCATTCGTGTTTTTTACCGGCAGCACGCGTTGGCATTCATGGGC
CGGGGGTACAGTGGACCTTCCCCTAAGTTCTGCGGGAATGCCTCCGCCGC
GACACCGAATACATGATTTCGCTGCGGCGTTGACGAGGTTTCACTTGTTT
TTGTCTATTTTGTTTTCTTGCCTCGTGTGTTTGGGAACGACGTCATCACT
GCAATATTTTTTTTTTCGTCGACGACATTTGACCGCCAACACGAAACGG
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Coding sequence (CDS) from alignment at Scaffold_370:615654..620802-

>EsuBft1269_4a-0001 ID=EsuBft1269_4a-0001|Name=EsuBft1269_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=678bp|location=Sequence derived from alignment at Scaffold_370:615654..620802- (Ectocarpus subulatus male Bft15b)
ATGCCATCTCAAAGGACTCTGGGCATTTTCCTCCAGGAGGCCTTCGGGTC
TTTCGCTCTGCTGATGATGGTGTTCCCGTTCAACAGCTTTATGGGCGACA
CGTGGTCCGCCTGGATTCAGCACTTCTTCTCCGTCATGATCACGGACTAC
ACCAACGGAGGCGCCCAAGTCAACCCCGCTATGTCGGTCGGCACTTTCTT
CTACGGCTGGAACGACGAGTCGTCTTTGGTGGTCCGCATCGTCGGACAAA
TGGTGGGCGGCTTCTACGCGTTCCCCATCATGGCGAAGCTGCTCCCCAGC
TACGCCACGAGCAGTATGGGCGGGCCCACCCTGGCGGCGGGCGCTAGTAC
GGGTCAGGGCATGGCTTGGGAGTTCGGCTCGACGTTCGCGTTGATCCTGA
TCGTGTACGTCGCGGCCACGCAGATCGGTCTTCCTGGACAGCGACCGGTG
ATCGCCACGGGCATCCGCGCGCTTATCCACTTGAGCGCTGTCAAGGGCGG
GAAGACTGGGCCCGCAATGAACCCCATGATCGCGACTGCTTGGGCGGTGT
ACGACAAGTCTGTCACCATGAACCAGCAGTGGTTCCTGGTGTACTGGGTC
GCTCCTTGCGCCGCGGCGGTGGCGGGCACCCTGCTGTGGAAAGTTCTCGA
GCCCAAACCCAAGGCTAAAACCGACTGA
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