EsuBft1257_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1257_9a-0001
Unique NameEsuBft1257_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:108940..109777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1257_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length83
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9aEsuBft1257_9aEctocarpus subulatus male Bft15bgeneScaffold_129 108940..109777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9a-0001-exonEsuBft1257_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 108940..109777 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9a-0001-exonagat-five_prime_utr-1605Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 108940..109207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9a-0001-cdsEsuBft1257_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 109208..109570 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9a-0001-exonagat-three_prime_utr-2429Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 109571..109777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_9a-0001EsuBft1257_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 109208..109570 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1257_9a-0001 ID=EsuBft1257_9a-0001|Name=EsuBft1257_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=838bp|location=Sequence derived from alignment at Scaffold_129:108940..109777+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTAAGGCCAATTGTTATGGAAGAATTCCAAGTTTGGAATCCTCCGCCC
TGGGAAAACAAATTCCAACGCCGAAATTCCAATTTGGTAATCTGGTGCCG
ACCAAGTTATGGGGGAATAGGAATCCGGAGCGTTGGGGGGGTAGAATACG
ATGCACGGAGCGGAGAATTCAAAAATGGGCGCGATTCTATGTACCGCACT
CCCAGCAGACCATCCTTTCCCTGCGGGCGGGCGTGCGTGCGTACCATCCG
CAACGAAACACCGCGAGCATGGCCAACTTGCCCCCTGTTCTGAGCGAGTG
CGAGCCAATTGAGTCATGGGGGGCCGATCAGCCACGACAGGAGATAGTGT
GGTCGTGGAATCGATTCGTTGCCATGGGACCGAGAGGCGGGGCCTGGACG
CATCAGCAACGCCGCCTGCTGCAAAACCCGGCCGCGTACTACGCCAACCA
GTCTGTGAGGGACAAGGATGACATGCAGGCGCCTGACATGCATGCGCATG
CTGCAAACTGCATGAGGACGTTCGCGGCTCCTGGGATTATTCTGTTCTTG
ACCCAATCGTGCGGATTCAGTATGCCTCATGGTCTCGACGCAGGAGAGCT
CGGGAAGGTCTCCGAAAACGACGGTGAGTAGCTTTAGCTTAGGGAGCGTT
GGCACTACACATATCCCTCTATTGTTCAAATGTGTAGGACACCACCTCGG
TGCCTACATGTAGCAAGGATAGGCGCTGGCTGTCGACTCGGAGCACTCTG
TAGTATGTTCTCGCCGATTTGCCCCCGCTCCGGCGGCGGTGTGGCGGCAA
ACGGCGGCGGCGGTGGCAACGGCGGCGTCCGCTATTTC
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protein sequence of EsuBft1257_9a-0001

>EsuBft1257_9 ID=EsuBft1257_9|Name=EsuBft1257_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MANLPPVLSECEPIESWGADQPRQEIVWSWNRFVAMGPRGGAWTHQQRRL
LQNPAAYYANQSVRDKDDMQAPDMHAHAANCMRTFAAPGIILFLTQSCGF
SMPHGLDAGELGKVSENDGE
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mRNA from alignment at Scaffold_129:108940..109777+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1257_9a-0001 ID=EsuBft1257_9a-0001|Name=EsuBft1257_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=838bp|location=Sequence derived from alignment at Scaffold_129:108940..109777+ (Ectocarpus subulatus male Bft15b)
TTGTAAGGCCAATTGTTATGGAAGAATTCCAAGTTTGGAATCCTCCGCCC
TGGGAAAACAAATTCCAACGCCGAAATTCCAATTTGGTAATCTGGTGCCG
ACCAAGTTATGGGGGAATAGGAATCCGGAGCGTTGGGGGGGTAGAATACG
ATGCACGGAGCGGAGAATTCAAAAATGGGCGCGATTCTATGTACCGCACT
CCCAGCAGACCATCCTTTCCCTGCGGGCGGGCGTGCGTGCGTACCATCCG
CAACGAAACACCGCGAGCATGGCCAACTTGCCCCCTGTTCTGAGCGAGTG
CGAGCCAATTGAGTCATGGGGGGCCGATCAGCCACGACAGGAGATAGTGT
GGTCGTGGAATCGATTCGTTGCCATGGGACCGAGAGGCGGGGCCTGGACG
CATCAGCAACGCCGCCTGCTGCAAAACCCGGCCGCGTACTACGCCAACCA
GTCTGTGAGGGACAAGGATGACATGCAGGCGCCTGACATGCATGCGCATG
CTGCAAACTGCATGAGGACGTTCGCGGCTCCTGGGATTATTCTGTTCTTG
ACCCAATCGTGCGGATTCAGTATGCCTCATGGTCTCGACGCAGGAGAGCT
CGGGAAGGTCTCCGAAAACGACGGTGAGTAGCTTTAGCTTAGGGAGCGTT
GGCACTACACATATCCCTCTATTGTTCAAATGTGTAGGACACCACCTCGG
TGCCTACATGTAGCAAGGATAGGCGCTGGCTGTCGACTCGGAGCACTCTG
TAGTATGTTCTCGCCGATTTGCCCCCGCTCCGGCGGCGGTGTGGCGGCAA
ACGGCGGCGGCGGTGGCAACGGCGGCGTCCGCTATTTC
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Coding sequence (CDS) from alignment at Scaffold_129:108940..109777+

>EsuBft1257_9a-0001 ID=EsuBft1257_9a-0001|Name=EsuBft1257_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_129:108940..109777+ (Ectocarpus subulatus male Bft15b)
ATGGCCAACTTGCCCCCTGTTCTGAGCGAGTGCGAGCCAATTGAGTCATG
GGGGGCCGATCAGCCACGACAGGAGATAGTGTGGTCGTGGAATCGATTCG
TTGCCATGGGACCGAGAGGCGGGGCCTGGACGCATCAGCAACGCCGCCTG
CTGCAAAACCCGGCCGCGTACTACGCCAACCAGTCTGTGAGGGACAAGGA
TGACATGCAGGCGCCTGACATGCATGCGCATGCTGCAAACTGCATGAGGA
CGTTCGCGGCTCCTGGGATTATTCTGTTCTTGACCCAATCGTGCGGATTC
AGTATGCCTCATGGTCTCGACGCAGGAGAGCTCGGGAAGGTCTCCGAAAA
CGACGGTGAGTAG
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