EsuBft1257_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1257_7a-0001
Unique Name	EsuBft1257_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:99013..101225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft1257_7
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	2148
Hectar predicted targeting category	other localisation
Evalue	2.97e-22
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a	EsuBft1257_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 99013..101225 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a-0001-exon	EsuBft1257_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 99013..99357 -
EsuBft1257_7a-0001-exon	agat-exon-43677	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 99423..101225 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a-0001-exon	agat-three_prime_utr-2427	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 99013..99086 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a-0001-cds	EsuBft1257_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 99087..99357 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a-0001-exon	agat-five_prime_utr-1603	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_129 101135..101225 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_7a-0001	EsuBft1257_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 99087..101134 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:99013..101225-
coding sequence from alignment at Scaffold_129:99013..101225-

spliced messenger RNA

>EsuBft1257_7a-0001 ID=EsuBft1257_7a-0001|Name=EsuBft1257_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2148bp|location=Sequence derived from alignment at Scaffold_129:99013..101225- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG
TTGTGATCAACCCCCTCATCCCCCAGGACCATTTGCCTCTCATGGATATG
AGCATGTTCCTTGATGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA
GGGTGATTTTTTTCCGGATGCCCTTGATGTTTGCGATTCCGCAACACCCC
CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT
TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC
GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA
AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT
GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT
GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC
GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA
ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG
GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG
AGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC
GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG
CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC
GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG
AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT
CCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGTCA
ACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCTTC
AACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCGTTTGAGGC
GTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAGG
GGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAATCCGCGCGG
TGCTTCTACCTGCACGGCGCCAACAACCACTCGACGTCTACCGCCGTCGT
TCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTGGG
TCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGGCCATCGGGGGGGGT
TCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCTGCGGCCGC
TGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATACATCCCGC
CTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGCCGATCTTC
ACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCGAGTGCACC
GCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACCACCGCCCG
CAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAGCC
GTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGCGG
CGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTCAG
GTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGATGATGGAC
AAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTCGACCAAGG
ACGTGGGAGCTGGGGGGCCCGTGGATTCCGGGGGGGGGGGAGACCGCACA
TGTTCGCCTCGATGTTCGCCACCCGCGAGGACGTGGACGCTGCTCTTCGC
GCCGAGCGTCCTCCTGACAAGATGCCGGACCTTCCTCACTGCCTCGCCAG
CGACCTCCGAGTGCCGAAAACGTTGAAGGAGGCCATGCGGTCTCAACATT
CAGAGTTGTGGGATGATGCAGTCGGTCGAGAGTTTTTCGGTTTGCTGGAT
GCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGAGAACGCCATCAATGC
CAAGTGGGTTTTTAACTGTAAAGCAGACGAGTACGGATGGCCGACTAA

protein sequence of EsuBft1257_7a-0001

>EsuBft1257_7 ID=EsuBft1257_7|Name=EsuBft1257_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=660bp
MDMSMFLDVGLMDGKDSVPQGDFFPDALDVCDSATPPPPAFPVMSDDLEC
LKGFVAGCSEQQTVAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHAS
TGHVNEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVP
FGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYEMRAKSDTLKFVQR
FLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNA
VVESAIWRAMKGGHAARRHILAMGHVDLSSVPNVGVNGHRLWLASALWAS
ACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQ
SARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVWVNRRAGAPAPVPAI
GGGSSVTAAPSPGAAVPAAAAAPPPPPSTRMYTYIPPAPPTTTPPPPASP
PIFTGSSAPSPISTASSSAPPSTVATPPRPPPTPPPASAAAPAPHHPPLS
QRAVRELGEKETRVHGRTRGDRVRFMDEQQQPPSPSGGGTALHHRLGLLA
MMDKDSLISSLATREAVDQGRGSWGARGFRGGGRPHMFASMFATREDVDA
ALRAERPPDKMPDLPHCLASDLRVPKTLKEAMRSQHSELWDDAVGREFFG
LLDAGTFSPV

mRNA from alignment at Scaffold_129:99013..101225-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1257_7a-0001 ID=EsuBft1257_7a-0001|Name=EsuBft1257_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2213bp|location=Sequence derived from alignment at Scaffold_129:99013..101225- (Ectocarpus subulatus male Bft15b)
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG
TTGTGATCAACCCCCTCATCCCCCAGGACCATTTGCCTCTCATGGATATG
AGCATGTTCCTTGATGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA
GGGTGATTTTTTTCCGGATGCCCTTGATGTTTGCGATTCCGCAACACCCC
CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT
TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC
GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA
AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT
GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT
GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC
GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA
ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG
GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG
AGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC
GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG
CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC
GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG
AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT
CCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGTCA
ACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCTTC
AACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCGTTTGAGGC
GTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAGG
GGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAATCCGCGCGG
TGCTTCTACCTGCACGGCGCCAACAACCACTCGACGTCTACCGCCGTCGT
TCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTGGG
TCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGGCCATCGGGGGGGGT
TCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCTGCGGCCGC
TGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATACATCCCGC
CTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGCCGATCTTC
ACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCGAGTGCACC
GCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACCACCGCCCG
CAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAGCC
GTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGCGG
CGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTCAG
GTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGATGATGGAC
AAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTCGACCAAGG
ACGGTGTGACCCACCGCCTCCGCCGCCGCCGGATCCGAGCTTTGGAGGCC
GTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGCCCGTGGATTCCGGGGGG
GGGGGAGACCGCACATGTTCGCCTCGATGTTCGCCACCCGCGAGGACGTG
GACGCTGCTCTTCGCGCCGAGCGTCCTCCTGACAAGATGCCGGACCTTCC
TCACTGCCTCGCCAGCGACCTCCGAGTGCCGAAAACGTTGAAGGAGGCCA
TGCGGTCTCAACATTCAGAGTTGTGGGATGATGCAGTCGGTCGAGAGTTT
TTCGGTTTGCTGGATGCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAGA
GAACGCCATCAATGCCAAGTGGGTTTTTAACTGTAAAGCAGACGAGTACG
GATGGCCGACTAA

Coding sequence (CDS) from alignment at Scaffold_129:99013..101225-

>EsuBft1257_7a-0001 ID=EsuBft1257_7a-0001|Name=EsuBft1257_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1983bp|location=Sequence derived from alignment at Scaffold_129:99013..101225- (Ectocarpus subulatus male Bft15b)
ATGGATATGAGCATGTTCCTTGATGTTGGCCTGATGGATGGAAAAGACTC
GGTCCCACAGGGTGATTTTTTTCCGGATGCCCTTGATGTTTGCGATTCCG
CAACACCCCCTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGC
CTGAAAGGTTTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCC
CTCTCTCTCGCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTT
CGGTAGGAAAATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCC
ACCGGCCATGTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGG
CGTACGATTGGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGA
AGGGTAGGCGGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCG
TTCGGCAAAATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGA
CGGCTCCCGGTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAAC
GGGGGTACGAGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGG
TTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGA
CAACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTG
CTGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCG
GTGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCG
CCGCCACATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACG
TCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCC
GCCTGCTTCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCC
GTTTGAGGCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTT
TCCAGGAGGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAA
TCCGCGCGGTGCTTCTACCTGCACGGCGCCAACAACCACTCGACGTCTAC
CGCCGTCGTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACG
TCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCGCCGGTGCCGGCCATC
GGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACC
TGCGGCCGCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACAT
ACATCCCGCCTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCG
CCGATCTTCACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTC
GAGTGCACCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACAC
CACCGCCCGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCA
CAGCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCG
TACGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGT
CGCCGTCAGGTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCG
ATGATGGACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGT
CGACCAAGGACGTGGGAGCTGGGGGGCCCGTGGATTCCGGGGGGGGGGGA
GACCGCACATGTTCGCCTCGATGTTCGCCACCCGCGAGGACGTGGACGCT
GCTCTTCGCGCCGAGCGTCCTCCTGACAAGATGCCGGACCTTCCTCACTG
CCTCGCCAGCGACCTCCGAGTGCCGAAAACGTTGAAGGAGGCCATGCGGT
CTCAACATTCAGAGTTGTGGGATGATGCAGTCGGTCGAGAGTTTTTCGGT
TTGCTGGATGCAGGAACTTTTAGTCCGGTGTAG