EsuBft1257_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1257_6a-0001
Unique Name	EsuBft1257_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:97443..99011 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7070.TC002223-PA
ProteomeId	EsuBft1257_6
Protein domains	IPR013103
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1569
Hectar predicted targeting category	other localisation
Evalue	5.94e-75
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a	EsuBft1257_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 97443..99011 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a-0001-exon	EsuBft1257_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 97443..99011 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a-0001-exon	agat-three_prime_utr-2426	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 97443..97664 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a-0001-cds	EsuBft1257_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 97665..98981 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a-0001-exon	agat-five_prime_utr-1602	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_129 98982..99011 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1257_6a-0001	EsuBft1257_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 97665..98981 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:97443..99011-
coding sequence from alignment at Scaffold_129:97443..99011-

spliced messenger RNA

>EsuBft1257_6a-0001 ID=EsuBft1257_6a-0001|Name=EsuBft1257_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1569bp|location=Sequence derived from alignment at Scaffold_129:97443..99011- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCAAGGCAAGACTTGTAGCACGGGGGGACATGCAGAGGGCTTCGATTGA
TTTTGGAGAATTGTTTGCACCCACCGTATCAGTGTCTAGTGTGCGCTTGT
TGGCAGCATTAGCATGTGAGCAGAATCTTGACTTGTGCCATTTCGATATT
CAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAGGATGTTTTCATGCGCTT
ACCGCAGGGTTGTGGTAGGTTATCTGGCCTGATCGTGAAGCTGTGCAAGA
GTCTGTATGGTTTGAAGCAGGCATCACGACATTGGCATGCGCACCTGACG
AGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGTCTGGCGGATGCATGTGT
TTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATCGTGGTCCACG
TAGATGATATTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGC
AGGGATCTCAACGAGATGGTCCCCGTGAAGAACCTTGGAGAGTTGAGGTG
GTACTCCGCGTGCTTTTACGAGAGAGACGTAGAGAGAGGGCTGCTGAAGA
TTTCACAACAGAGGTTTGCCGAAGAGTTGGCTGCGGAGTATGGCGTTGAG
TGGGGGCAGAGTGTGCCTCTGCCTGTTAGCGTAAAGCTCACCGACTTTGA
CGTGAATGAAGCGAGTGCTGACGTCCCTTTTCGCGAGTTGGTAGGATCTC
TGATGTGGTTGGCCACTCAAACAAGGCCGGACATCGCGAATGCAGTACGA
GCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGC
ACTCGGTATTTTAGGGTACGTACGCAGGACGAGTTGGATGGGGATTACAT
TTGAGAGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCC
GACTATGCAAGCAAGGCGGCAGACCGGAGGTCGGTATCAGGGGGGCTAGT
GATGTGTGGGGGGGGGTGTGTGACTTGGTTTTCACGAACGCAGAAATGCG
TCACCCTTTCCACCACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTG
AAGGAAGTGTTGTTCTTAAGGCAGGTGTGGCGTTTTATGTTGCCAGATGC
GGGTATGCCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGA
TTGCGCACAACCCGATCACGAACTCCAACTCGAAGCACATCGATGTACGG
CATCACTTTATCAGGGAGCTGGTAGAGAGGAAGGAGATTACTATTACTCA
TGTGCCGACGCAATTTCAGCATGCAGACTTCTTGACGAAGGCTATTAGCA
AGGAGTCTTTTGCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGAAGG
AAGTGTTTTGGGGTCGATTCGTATTCTGTAGTAGAGAGAGAAAGAGAAAG
ACGAGATTGGACAAGAAAAAGAGAGAGTCCGATGAAGATCGTAGGGGTTT
TGGTTGTGTTGGGAATTTTTTTGATTATTTTGGAGTAGTATTGGTTGTGT
TGGAATTTTTCTTGATTGTCTTGGAGGAGTTTTTCTTGTTTTGGAGATGG
TGGTTACGGTGAGGGTAAT

protein sequence of EsuBft1257_6a-0001

>EsuBft1257_6 ID=EsuBft1257_6|Name=EsuBft1257_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELD
EDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHAHLTRCLLLLGFLQ
CLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGRDLNEMVPVK
NLGELRWYSACFYERDVERGLLKISQQRFAEELAAEYGVEWGQSVPLPVS
VKLTDFDVNEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK
MVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRR
SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVW
RFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVER
KEITITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ

mRNA from alignment at Scaffold_129:97443..99011-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1257_6a-0001 ID=EsuBft1257_6a-0001|Name=EsuBft1257_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1569bp|location=Sequence derived from alignment at Scaffold_129:97443..99011- (Ectocarpus subulatus male Bft15b)
TTCAAGGCAAGACTTGTAGCACGGGGGGACATGCAGAGGGCTTCGATTGA
TTTTGGAGAATTGTTTGCACCCACCGTATCAGTGTCTAGTGTGCGCTTGT
TGGCAGCATTAGCATGTGAGCAGAATCTTGACTTGTGCCATTTCGATATT
CAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAGGATGTTTTCATGCGCTT
ACCGCAGGGTTGTGGTAGGTTATCTGGCCTGATCGTGAAGCTGTGCAAGA
GTCTGTATGGTTTGAAGCAGGCATCACGACATTGGCATGCGCACCTGACG
AGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGTCTGGCGGATGCATGTGT
TTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATCGTGGTCCACG
TAGATGATATTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGC
AGGGATCTCAACGAGATGGTCCCCGTGAAGAACCTTGGAGAGTTGAGGTG
GTACTCCGCGTGCTTTTACGAGAGAGACGTAGAGAGAGGGCTGCTGAAGA
TTTCACAACAGAGGTTTGCCGAAGAGTTGGCTGCGGAGTATGGCGTTGAG
TGGGGGCAGAGTGTGCCTCTGCCTGTTAGCGTAAAGCTCACCGACTTTGA
CGTGAATGAAGCGAGTGCTGACGTCCCTTTTCGCGAGTTGGTAGGATCTC
TGATGTGGTTGGCCACTCAAACAAGGCCGGACATCGCGAATGCAGTACGA
GCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGC
ACTCGGTATTTTAGGGTACGTACGCAGGACGAGTTGGATGGGGATTACAT
TTGAGAGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCC
GACTATGCAAGCAAGGCGGCAGACCGGAGGTCGGTATCAGGGGGGCTAGT
GATGTGTGGGGGGGGGTGTGTGACTTGGTTTTCACGAACGCAGAAATGCG
TCACCCTTTCCACCACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTG
AAGGAAGTGTTGTTCTTAAGGCAGGTGTGGCGTTTTATGTTGCCAGATGC
GGGTATGCCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGA
TTGCGCACAACCCGATCACGAACTCCAACTCGAAGCACATCGATGTACGG
CATCACTTTATCAGGGAGCTGGTAGAGAGGAAGGAGATTACTATTACTCA
TGTGCCGACGCAATTTCAGCATGCAGACTTCTTGACGAAGGCTATTAGCA
AGGAGTCTTTTGCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGAAGG
AAGTGTTTTGGGGTCGATTCGTATTCTGTAGTAGAGAGAGAAAGAGAAAG
ACGAGATTGGACAAGAAAAAGAGAGAGTCCGATGAAGATCGTAGGGGTTT
TGGTTGTGTTGGGAATTTTTTTGATTATTTTGGAGTAGTATTGGTTGTGT
TGGAATTTTTCTTGATTGTCTTGGAGGAGTTTTTCTTGTTTTGGAGATGG
TGGTTACGGTGAGGGTAAT

Coding sequence (CDS) from alignment at Scaffold_129:97443..99011-

>EsuBft1257_6a-0001 ID=EsuBft1257_6a-0001|Name=EsuBft1257_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_129:97443..99011- (Ectocarpus subulatus male Bft15b)
ATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATC
AGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCTTG
ACTTGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGAT
GAGGATGTTTTCATGCGCTTACCGCAGGGTTGTGGTAGGTTATCTGGCCT
GATCGTGAAGCTGTGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACGAC
ATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGCAG
TGTCTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGACGTGTGAT
CATGATCATCGTGGTCCACGTAGATGATATTTTTGCCGTAGGGCAGAAGG
AGAGGTGTGACAAGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGAAG
AACCTTGGAGAGTTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGACGT
AGAGAGAGGGCTGCTGAAGATTTCACAACAGAGGTTTGCCGAAGAGTTGG
CTGCGGAGTATGGCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTAGC
GTAAAGCTCACCGACTTTGACGTGAATGAAGCGAGTGCTGACGTCCCTTT
TCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCCGG
ACATCGCGAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAG
ATGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTACGTACGCAGGAC
GAGTTGGATGGGGATTACATTTGAGAGGGGCGTCGTGACAGGTATGAGCA
TGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCGGCAGACCGGAGG
TCGGTATCAGGGGGGCTAGTGATGTGTGGGGGGGGGTGTGTGACTTGGTT
TTCACGAACGCAGAAATGCGTCACCCTTTCCACCACGGAAGCAGAGTATG
TGGCAATTGCCGACGTCTTGAAGGAAGTGTTGTTCTTAAGGCAGGTGTGG
CGTTTTATGTTGCCAGATGCGGGTATGCCGTGCATCCCGGTGTTCGAGGA
TAATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCCAACT
CGAAGCACATCGATGTACGGCATCACTTTATCAGGGAGCTGGTAGAGAGG
AAGGAGATTACTATTACTCATGTGCCGACGCAATTTCAGCATGCAGACTT
CTTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTTTG
TGATGAACTTGCAGTGA