EsuBft1257_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1257_4a-0001
Unique NameEsuBft1257_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:59960..60690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1257_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length41
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_4aEsuBft1257_4aEctocarpus subulatus male Bft15bgeneScaffold_129 59960..60690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_4a-0001-exonagat-exon-43653Ectocarpus subulatus male Bft15bexonScaffold_129 59960..60320 -
EsuBft1257_4a-0001-exonEsuBft1257_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 60634..60690 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_4a-0001-exonagat-three_prime_utr-2425Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 59960..60185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_4a-0001-cdsEsuBft1257_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 60186..60320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_4a-0001EsuBft1257_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 60186..60690 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1257_4a-0001 ID=EsuBft1257_4a-0001|Name=EsuBft1257_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=418bp|location=Sequence derived from alignment at Scaffold_129:59960..60690- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCTTTCGTTCTTTCATCCTTTTTTGACCCGGGGTCGATCGTCTG
CATCCCGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGC
GCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAG
TCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGAT
TTTCGTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATGTGACAGATTTGCG
TAGAATAGGGTAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAA
CACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACA
AGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGAACGCATA
TAGGATACCATCAGGATT
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protein sequence of EsuBft1257_4a-0001

>EsuBft1257_4 ID=EsuBft1257_4|Name=EsuBft1257_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=63bp
MMSFVLSSFFDPGSIVCIPVAISRRVQRYKLALRGRQDAENRRTRSTSDQ
STPMIWGWSVDAS
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mRNA from alignment at Scaffold_129:59960..60690-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1257_4a-0001 ID=EsuBft1257_4a-0001|Name=EsuBft1257_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=731bp|location=Sequence derived from alignment at Scaffold_129:59960..60690- (Ectocarpus subulatus male Bft15b)
ATGATGTCTTTCGTTCTTTCATCCTTTTTTGACCCGGGGTCGATCGTCTG
CATCCCGGTTAGTTTTCGTTTTCGTTTGGTTATGTAGTCTACACACAAAA
CCCTTCTTTATGTAGTAGTCTATGTCAAACATGACGGGTTGAACAACGGG
AACTGACGAGAACTAACTATGGACCTCCAACGCTTTTTGTTTTAGTCGGA
CGGCGGGATGAAGAACGCATTGCCCTCTTTTTGGGCAACAGCAAAGTGTT
GGTGGCTGGTCAAGAGAAGATTGCACAGCAATTGCTGTATTATTGTTCCT
AAGATTGATGATTGGTGGTTTTGTTCCGAAAATGTGTATCTAGAATNAGA
TCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTAC
AAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATC
GACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCAT
CGTAGAACGCGATTTTCGTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATG
TGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGATGAA
AGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGAT
TTCAGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTAC
GAACGAACGCATATAGGATACCATCAGGATT
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Coding sequence (CDS) from alignment at Scaffold_129:59960..60690-

>EsuBft1257_4a-0001 ID=EsuBft1257_4a-0001|Name=EsuBft1257_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_129:59960..60690- (Ectocarpus subulatus male Bft15b)
ATGATGTCTTTCGTTCTTTCATCCTTTTTTGACCCGGGGTCGATCGTCTG
CATCCCGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGC
GCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAG
TCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAG
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