EsuBft1257_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1257_3a-0001
Unique NameEsuBft1257_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:50764..53740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FLQ1
ProteomeIdEsuBft1257_3
Protein domainsIPR002859
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length99
Hectar predicted targeting categoryother localisation
Evalue1.82e-14
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondetection of mechanical stimulus
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_3aEsuBft1257_3aEctocarpus subulatus male Bft15bgeneScaffold_129 50764..53740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_3a-0001EsuBft1257_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 50764..53740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_3a-0001-exonagat-exon-43650Ectocarpus subulatus male Bft15bexonScaffold_129 50764..50966 -
EsuBft1257_3a-0001-exonagat-exon-43649Ectocarpus subulatus male Bft15bexonScaffold_129 51239..51442 -
EsuBft1257_3a-0001-exonagat-exon-43651Ectocarpus subulatus male Bft15bexonScaffold_129 51556..51608 -
EsuBft1257_3a-0001-exonEsuBft1257_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 52979..53318 -
EsuBft1257_3a-0001-exonagat-exon-43652Ectocarpus subulatus male Bft15bexonScaffold_129 53551..53740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1257_3a-0001-cdsEsuBft1257_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 50764..50966 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1257_3a-0001 ID=EsuBft1257_3a-0001|Name=EsuBft1257_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=990bp|location=Sequence derived from alignment at Scaffold_129:50764..53740- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCCGTCAATGACCTGCTTGATCTCCAGGCCGGGGCTCAAAATGC
CTTGGTTGTCACGCTGCCGAGTGCAAGCTTGGGTGAAAGTTCTACATACT
GGTTCGGCCTCCGCGTGACGACCGGGATTGGTTTGTGGAGCGAGGCTAGC
GTAGAGGTATTCAAGTCTACGGATGCCCTTCCCGCTGAAGTTCACCCAGC
TATGCTTGTGCCGCCGACGTCAACCGCGATACTGTGTTGCCCCCTGCAGA
TTGCGGAATCTGTATCTTGGGAGCAGTGGCGTGGGCTTCCGCTTACCGTC
CGCACCGAGGTGACGTCGCCTCGTTCCCAAGACGACAACCTTACTTACAC
ATGGACCCTGGCTTCGGAATACAGTGCCACGGAGGACATTCCACTAGATG
CTGACCAAGGGGAGAAATCCCAGCGTCCTCAAGCTTCCCGCACATTCCTT
CGGACACGCCGGCAGCATCTACGTCTTCAGGGTGACCGCTGCAGGCAGCA
CGTCGAGCGCTACCTCGGATACTGCGACAGAGGAGCCGTGCAGCTCCTCG
ACGTCGTCAATCTTGACGCTAGAGTGGAGACCGGCCTAAACTCTAATATT
CTTCCCAACTGTTCGAACTGTCGACAGGAGAGCGAAAACCTCGACTTGAG
CAATGGGTGGGACGATGTATTCAGCGCCGCCACGAGCGATCGGGTGCTCG
TTGTCCGAAAAGGAGTCCTTGGCGCGGGGCGGACGTACGCGTTCTCCCTA
TCTGCAACCGACACATCCGGGCAGAAAGGCTATGCAGAGTACTCGTTCGA
GACCAACGCCCCCCCCGCTGGGGGGCACGTGGAATCGAATACCTCATCGG
CGAACGCCGGCGTCGATGGCGTCCGTCTCCAGAGCATAGGGTGGACGGAT
GGCGTGGACGAGCTTCCGTTCACGCACTCCTTTGGGTTCGTGCATGGGTA
CCAACAAGTGGCAACGATCGCGAGGTACCCCGTGTCCTGA
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protein sequence of EsuBft1257_3a-0001

>EsuBft1257_3 ID=EsuBft1257_3|Name=EsuBft1257_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MRAVNDLLDLQAGAQNALVVTLPSASLGESSTYWFGLRVTTGIGLWSEAS
VEVFKSTDALPAEVHPAMLVPPTSTAILCCPLQIAESVSWEQWRGLPLTV
RTEVTSPRSQDDNLTYTWTLASEYSATEDIPLDADQGEKSQRPQASRTFL
RTRRQHLRLQGDRCRQHVERYLGYCDRGAVQLLDVVNLDARVETGLNSNI
LPNCSNCRQESENLDLSNGWDDVFSAATSDRVLVVRKGVLGAGRTYAFSL
SATDTSGQKGYAEYSFETNAPPAGGHVESNTSSANAGVDGVRLQSIGWTD
GVDELPFTHSFGFVHGYQQVATIARYPVS
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mRNA from alignment at Scaffold_129:50764..53740-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1257_3a-0001 ID=EsuBft1257_3a-0001|Name=EsuBft1257_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2977bp|location=Sequence derived from alignment at Scaffold_129:50764..53740- (Ectocarpus subulatus male Bft15b)
ATGCGTGCCGTCAATGACCTGCTTGATCTCCAGGCCGGGGCTCAAAATGC
CTTGGTTGTCACGCTGCCGAGTGCAAGCTTGGGTGAAAGTTCTACATACT
GGTTCGGCCTCCGCGTGACGACCGGGATTGGTTTGTGGAGCGAGGCTAGC
GTAGAGGTATTCAAGTCTACGGATGCCCTTCCCGCTGAAGGTAGGTACAC
AACCCAAGTTAGACTTGCCAATTATTGCCCTAGGAGTGGATGTCCAGGAA
ACACATCGATCCTTCCCTTGACTTGCAGGACTGAAACTGCTTGCATTGGC
TCCCTGCTCATGATCCTCGCACCCGATCGTAGGGAATAAGATCAATGGCA
ACCACCCCACTGCACGATGTTTTAGTACTATGCCGAGCTTTGTTGTTGGC
CACAACACACCTACGTTATCAGTTCACCCAGCTATGCTTGTGCCGCCGAC
GTCAACCGCGATACTGTGTTGCCCCCTGCAGATTGCGGAATCTGTATCTT
GGGAGCAGTGGCGTGGGCTTCCGCTTACCGTCCGCACCGAGGTGACGTCG
CCTCGTTCCCAAGACGACAACCTTACTTACACATGGACCCTGGCTTCGGA
ATACAGTGCCACGGAGGACATTCCACTAGATGCTGACCAAGGGGAGAAAT
CCCAGCGTCCTCAAGCTTCCCGCACATTCCTTCGGACACGCCGGCAGCAT
CTACGTCTTCAGGGTGACCGCTGCAGGCAGCACGTCGAGCGCTACCTCGG
ATACTGCGACAGGTGCTCCCAACGTCATGCGATCACCACATTCCATTTGC
ACATCAGCATGTCGAAACAAGTTGACCCGTTCCCATCGATGTATTGATAG
ATCTGTGTTGCAATGATCGTTCTCTTGTAGCCACTGAAACGAAACCGCTG
AGTTCCCTCACGCTTCACCCCGACAGTTGAGGTTATCAGTGTAGCAATAA
TCGCCCGCATCTTTGGTGGGACAACGAGGAGGGTTGGCGTCATGCAGGTA
AAATTCCAAAGAGGTTCAAATCGTGCCTGAGATCAAGTTGGTGCATGCTT
GAATCTTCACTCCGTTATTGCAACCGTTAAAATACACTCCAGGACACCAT
CATCCAAGTCGACAATGGTTTTGACATAGACAAAAGACGCGCCGTCACGA
CCAAGTAACATTCGAATTTTGATTTGATCGTGGTGGGAGAAGCCCTTCCT
TGAACACCAAGCGCCCTCGTCGTATGCAGGAAAAATACCTTTCATCGTTC
CTTCTTCATTTCAAAACATTGTCGTCAAACGTTGGCTGCTGATGGGTCCT
AGATTGTTGATACATGGGGTGGATAGGGCTGTGCAGATCAAGCTACATGA
TCGCTCCACCATCAAGCTAAAAATCTCCTCTACTCTCGTTCGCTGTACAT
GTACTTTTCGGTGTCTTTCAGGACCTTTACTTGAACGCGTCCGTGTCGGT
GGATGACGACCAATTGCACGAATCCCCCTTTCAGTTCAGATGGAACTGTA
CTGACGACGTCGGAGAAGATTGCACATGTCCGAGTACGGAGCTCTTGGAT
ATTGACTCACTCTCAAGCGGAGGACTACTGATGATATCTGCGGGTACCCT
TCCAATCGGTAGGTCCGACGGTCATACGGTTATGTACCGAAAGGTCGTAC
GCCGCTTACGTAGGTACTATTAGTCTCGACCTGATTTCTTTCGCCCATCT
TTCGTGCTAAGGACGACAGACCTTTGACGTTGAATTGATCGAGCTCCTAT
TGTCCGCTCCCCTTCGCAGGTGTGGAATACAAGTTCGTCGTGACTGCCTT
TCGAGACTCGGCAGAGCTCAGAAGCAACGACATGTTTCCACGTTCGAGGG
AACTATTCCGCACGTGACCGTTTCTCTTAAGGTTGGCTCTCCGATCACCT
TCCCTGACTAACCTTCGGGCAAAAGCGACACAGAGTTACCAAGTATCGCA
GACCATGTCGTGTCGGCATGTGCTGTGCGAGGAGTGTGTTCACAGCAGAA
CGACATCACTTGGCGACACCTCACTCTTGCGTCTGCCGTGTGTCTGTTTT
TGTCGCGTTTGTCGGGCCATTCTCCGCAAATACAACCCTTCGGAAAAAAT
TATTCTACAGGGGTGTGCCTCCCCATCTGCAGAGGAGCCGTGCAGCTCCT
CGACGTCGTCAATCTTGACGCTAGAGTGGAGACCGGTAAGAAGAGAGCAG
CCCCCGCGCGCGGTGGAGCCCCCTTTAATGTCCATGAAGAGGGGACATGC
ATCTGAATCGCACATGACCCTCCAGTGTATTGTGCGCAGGAGGTGCAGGC
CTAAACTCTAATATTCTTCCCAACTGTTCGAACTGTCGACAGGAGAGCGA
AAACCTCGACTTGAGCAATGGGTGGGACGATGTATTCAGCGCCGCCACGA
GCGATCGGGTGCTCGTTGTCCGAAAAGGAGTCCTTGGCGCGGGGCGGACG
TACGCGTTCTCCCTATCTGCAACCGACACATCCGGGCAGAAAGGCTATGC
AGGTCCGCGTTAAAACGTAGACACAAAAAAATGGTCCCAAGTTATCCTGA
TTGCCTGAGCACGGTCGCCCTTTGTTTCAGATAGTCTCTTGATGGAGCTG
AAGTTGTCATGCCGGGCCTGACCCTGCGTGAGGAGGGCGATTAAGAACCG
AACACCTAATTTTTTCTTCTCCGACTCATTTTCCAACGCGGCCGTCATGG
AATACAGTAGTTCCCCATGATGCCCGCCAGTGATTGTCCTCTCAAGCGTT
TGTTTCCTACATGCGCCGAAACAGAGTACTCGTTCGAGACCAACGCCCCC
CCCGCTGGGGGGCACGTGGAATCGAATACCTCATCGGCGAACGCCGGCGT
CGATGGCGTCCGTCTCCAGAGCATAGGGTGGACGGATGGCGTGGACGAGC
TTCCGTTCACGCACTCCTTTGGGTTCGTGCATGGGTACCAACAAGTGGCA
ACGATCGCGAGGTACCCCGTGTCCTGA
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Coding sequence (CDS) from alignment at Scaffold_129:50764..53740-

>EsuBft1257_3a-0001 ID=EsuBft1257_3a-0001|Name=EsuBft1257_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_129:50764..53740- (Ectocarpus subulatus male Bft15b)
ATGCGTGCCGTCAATGACCTGCTTGATCTCCAGGCCGGGGCTCAAAATGC
CTTGGTTGTCACGCTGCCGAGTGCAAGCTTGGGTGAAAGTTCTACATACT
GGTTCGGCCTCCGCGTGACGACCGGGATTGGTTTGTGGAGCGAGGCTAGC
GTAGAGGTATTCAAGTCTACGGATGCCCTTCCCGCTGAAGTTCACCCAGC
TATGCTTGTGCCGCCGACGTCAACCGCGATACTGTGTTGCCCCCTGCAGA
TTGCGGAATCTGTATCTTGGGAGCAGTGGCGTGGGCTTCCGCTTACCGTC
CGCACCGAGGTGACGTCGCCTCGTTCCCAAGACGACAACCTTACTTACAC
ATGGACCCTGGCTTCGGAATACAGTGCCACGGAGGACATTCCACTAGATG
CTGACCAAGGGGAGAAATCCCAGCGTCCTCAAGCTTCCCGCACATTCCTT
CGGACACGCCGGCAGCATCTACGTCTTCAGGGTGACCGCTGCAGGCAGCA
CGTCGAGCGCTACCTCGGATACTGCGACAGAGGAGCCGTGCAGCTCCTCG
ACGTCGTCAATCTTGACGCTAGAGTGGAGACCGGCCTAAACTCTAATATT
CTTCCCAACTGTTCGAACTGTCGACAGGAGAGCGAAAACCTCGACTTGAG
CAATGGGTGGGACGATGTATTCAGCGCCGCCACGAGCGATCGGGTGCTCG
TTGTCCGAAAAGGAGTCCTTGGCGCGGGGCGGACGTACGCGTTCTCCCTA
TCTGCAACCGACACATCCGGGCAGAAAGGCTATGCAGAGTACTCGTTCGA
GACCAACGCCCCCCCCGCTGGGGGGCACGTGGAATCGAATACCTCATCGG
CGAACGCCGGCGTCGATGGCGTCCGTCTCCAGAGCATAGGGTGGACGGAT
GGCGTGGACGAGCTTCCGTTCACGCACTCCTTTGGGTTCGTGCATGGGTA
CCAACAAGTGGCAACGATCGCGAGGTACCCCGTGTCCTGA
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