EsuBft1254_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1254_8a-0001
Unique Name	EsuBft1254_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:648277..649598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7070.TC002223-PA
ProteomeId	EsuBft1254_8
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1049
Hectar predicted targeting category	other localisation
Evalue	2.83e-45
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Encoded by
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_8a	EsuBft1254_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 648277..649598 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_8a-0001-exon	EsuBft1254_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 648277..648877 +
EsuBft1254_8a-0001-exon	agat-exon-9737	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 649151..649598 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_8a-0001-exon	agat-five_prime_utr-1593	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_195 648277..648296 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_8a-0001-cds	EsuBft1254_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 648297..648877 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1254_8a-0001	EsuBft1254_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 648297..649598 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:648277..649598+
coding sequence from alignment at Scaffold_195:648277..649598+

spliced messenger RNA

>EsuBft1254_8a-0001 ID=EsuBft1254_8a-0001|Name=EsuBft1254_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1049bp|location=Sequence derived from alignment at Scaffold_195:648277..649598+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTGTTTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATC
GTGGTCCACGTGGATGACATTTTTGCTGTAGGGCAGAAGGAGAGGTGTGA
CAAGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGAAGAACCTTGGAG
AGTTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGACGTAAAGAGAGGG
GTGTTGAAGATTTCGCAGCAGAGTTTTGCCGAAGAGCTGGCTGCAGAGTA
TGGCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTAGCGTAAAGCTCT
CCGACTTTGACGTGAATGAAGCGAGTGCTGATGTCCCTTTTCGCGAGTTG
GTAGGATCTCTGATGTGGTTGGCCACTCAAACACGGCCGGACATTGCGAA
GTCAGTTCGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACT
GGAAGGCAGCACTCGGTATTTTAGGATCCGTACGCAGGACGAGTTGGATG
GGGATTACATTTGAGAGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTT
TGTGGATGCCGACTATGCAAGCAAGGTCGGTGTCTGGGGGGCTAGTGATG
TGTGTTTGTGGATGCCGACTATGCAAGCAAGGTCGGTGTCTGGGGGGCTA
GTGATGTGTGTGTGGGGGGGGGTGACTTGGCTTTCACGAATGCAGAAGTG
CGTTACGCTTTCCACCACGGAAGCAGAGTATGTGACAATTGCCGACGTCT
TGAAGGAAGCGATGTTCTTGAGGCAGGTGTGGCGTTTTATGTTGCGAGAT
GCGAGTATGGCGTGCATCCCGGTGTTCGAGGATAATCAGGGAGCGATCCA
GATTGCGCACGACCCGATCACGAACTCCAACTCGAAGCACATCGATGTAC
GGCATCACTTTATCAGGGAGCTGGTTGAGAGGAAAGTGATTTCAATTACT
CATGTGCCGACGCAATTTCAGTGTGCAGATTTCTGGACGAAGGCTATTAG
CAAGGAGTCTTTTGCTTTGCATCGTGACTTTGTGATGAACTTGCAGTGA

protein sequence of EsuBft1254_8a-0001

>EsuBft1254_8 ID=EsuBft1254_8|Name=EsuBft1254_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=342bp
MEEGRVIMIIVVHVDDIFAVGQKERCDKFGRDLNEMVPVKNLGELRWYSA
CFYERDVKRGVLKISQQSFAEELAAEYGVEWGQSVPLPVSVKLSDFDVNE
ASADVPFRELVGSLMWLATQTRPDIAKSVRAVARYCASPKMVHWKAALGI
LGSVRRTSWMGITFERGVVTGMSMQVFVDADYASKVGVWGASDVCLWMPT
MQARSVSGGLVMCVWGGVTWLSRMQKCVTLSTTEAEYVTIADVLKEAMFL
RQVWRFMLRDASMACIPVFEDNQGAIQIAHDPITNSNSKHIDVRHHFIRE
LVERKVISITHVPTQFQCADFWTKAISKESFALHRDFVMNLQ

mRNA from alignment at Scaffold_195:648277..649598+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1254_8a-0001 ID=EsuBft1254_8a-0001|Name=EsuBft1254_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1322bp|location=Sequence derived from alignment at Scaffold_195:648277..649598+ (Ectocarpus subulatus male Bft15b)
ATGCGTGTGTTTTTCGATTGATGGAGGAGGGACGTGTGATCATGATCATC
GTGGTCCACGTGGATGACATTTTTGCTGTAGGGCAGAAGGAGAGGTGTGA
CAAGTTTGGCAGGGATCTCAACGAGATGGTCCCCGTGAAGAACCTTGGAG
AGTTGAGGTGGTACTCCGCGTGCTTTTACGAGAGAGACGTAAAGAGAGGG
GTGTTGAAGATTTCGCAGCAGAGTTTTGCCGAAGAGCTGGCTGCAGAGTA
TGGCGTTGAGTGGGGGCAGAGTGTGCCTCTGCCTGTTAGCGTAAAGCTCT
CCGACTTTGACGTGAATGAAGCGAGTGCTGATGTCCCTTTTCGCGAGTTG
GTAGGATCTCTGATGTGGTTGGCCACTCAAACACGGCCGGACATTGCGAA
GTCAGTTCGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACT
GGAAGGCAGCACTCGGTATTTTAGGATCCGTACGCAGGACGAGTTGGATG
GGGATTACATTTGAGAGGGGCGTCGTGACAGGTATGAGCATGCAGGTGTT
TGTGGATGCCGACTATGCAAGCAAGGTCGGTGTCTGGGGGGCTAGTGATG
TGTGTGTGGGGGGGGGTGACTTGGCTTTCACGAATGCAGAAGTGCGTTAC
GCTTTCCACCACGGAAGCAGAGTATGTGACAATTGCCGACGTCTTGAAGG
AAGCGATGTTCTTGAGGCAGGTGTGGCGTTTTATGTTGCGAGATGCGAGT
ATGGNGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTT
TAGGATCCGTACGCAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGC
GTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAG
CAAGGTCGGTGTCTGGGGGGCTAGTGATGTGTGTGTGGGGGGGGGTGACT
TGGCTTTCACGAATGCAGAAGTGCGTTACGCTTTCCACCACGGAAGCAGA
GTATGTGACAATTGCCGACGTCTTGAAGGAAGCGATGTTCTTGAGGCAGG
TGTGGCGTTTTATGTTGCGAGATGCGAGTATGGCGTGCATCCCGGTGTTC
GAGGATAATCAGGGAGCGATCCAGATTGCGCACGACCCGATCACGAACTC
CAACTCGAAGCACATCGATGTACGGCATCACTTTATCAGGGAGCTGGTTG
AGAGGAAAGTGATTTCAATTACTCATGTGCCGACGCAATTTCAGTGTGCA
GATTTCTGGACGAAGGCTATTAGCAAGGAGTCTTTTGCTTTGCATCGTGA
CTTTGTGATGAACTTGCAGTGA

Coding sequence (CDS) from alignment at Scaffold_195:648277..649598+

>EsuBft1254_8a-0001 ID=EsuBft1254_8a-0001|Name=EsuBft1254_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1029bp|location=Sequence derived from alignment at Scaffold_195:648277..649598+ (Ectocarpus subulatus male Bft15b)
ATGGAGGAGGGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACAT
TTTTGCTGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCAGGGATCTCA
ACGAGATGGTCCCCGTGAAGAACCTTGGAGAGTTGAGGTGGTACTCCGCG
TGCTTTTACGAGAGAGACGTAAAGAGAGGGGTGTTGAAGATTTCGCAGCA
GAGTTTTGCCGAAGAGCTGGCTGCAGAGTATGGCGTTGAGTGGGGGCAGA
GTGTGCCTCTGCCTGTTAGCGTAAAGCTCTCCGACTTTGACGTGAATGAA
GCGAGTGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTT
GGCCACTCAAACACGGCCGGACATTGCGAAGTCAGTTCGAGCAGTAGCGC
GGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATT
TTAGGATCCGTACGCAGGACGAGTTGGATGGGGATTACATTTGAGAGGGG
CGTCGTGACAGGTATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAA
GCAAGGTCGGTGTCTGGGGGGCTAGTGATGTGTGTTTGTGGATGCCGACT
ATGCAAGCAAGGTCGGTGTCTGGGGGGCTAGTGATGTGTGTGTGGGGGGG
GGTGACTTGGCTTTCACGAATGCAGAAGTGCGTTACGCTTTCCACCACGG
AAGCAGAGTATGTGACAATTGCCGACGTCTTGAAGGAAGCGATGTTCTTG
AGGCAGGTGTGGCGTTTTATGTTGCGAGATGCGAGTATGGCGTGCATCCC
GGTGTTCGAGGATAATCAGGGAGCGATCCAGATTGCGCACGACCCGATCA
CGAACTCCAACTCGAAGCACATCGATGTACGGCATCACTTTATCAGGGAG
CTGGTTGAGAGGAAAGTGATTTCAATTACTCATGTGCCGACGCAATTTCA
GTGTGCAGATTTCTGGACGAAGGCTATTAGCAAGGAGTCTTTTGCTTTGC
ATCGTGACTTTGTGATGAACTTGCAGTGA