EsuBft124_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft124_9a-0001
Unique Name	EsuBft124_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:380100..382320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3055.EDP08589
ProteomeId	EsuBft124_9
Protein domains	PF13516
Protein domains	IPR003590
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	PTHR24106
Protein domains	SSF52047
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	G3DSA
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	3041\|Chlorophyta
Length	171
Hectar predicted targeting category	mitochondrion
Evalue	0.000805
EggNOG OGs	KOG4308@1\|root,KOG4308@2759\|Eukaryota,380MC@33090\|Viridiplantae,34MNA@3041\|Chlorophyta
Ec32 ortholog description	Hypothetical leucine rich repeat protein
Ec32 ortholog	Ec-15_000770.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Leucine Rich repeat
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft124_9a	EsuBft124_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 380100..382320 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_9a-0001-exon	EsuBft124_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 380100..381179 +
EsuBft124_9a-0001-exon	agat-exon-94841	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 381682..382320 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_9a-0001-cds	EsuBft124_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 380100..381179 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_9a-0001	EsuBft124_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 380100..382320 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:380100..382320+
coding sequence from alignment at Scaffold_245:380100..382320+

spliced messenger RNA

>EsuBft124_9a-0001 ID=EsuBft124_9a-0001|Name=EsuBft124_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1719bp|location=Sequence derived from alignment at Scaffold_245:380100..382320+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACATGAGGACTACCCGCATCCTCGCCGCAGGGAAGTCTGTGAG
GCGGCCCACGCCCGAGGACCGTCTCCAGCGGAAGATGGAAGCCAGAGCAG
CAGCAGCAGCGGCGGCGGCGGCGCGCTCGACGCCGTCTCCCGCGGCTGCG
AAAGCGGGTGAAGCGACCCCTCCGCCACTGACAGCCCTCCTCACCACAAG
CCCAAAACGATCGCGATTGCTCCCGGCGGCGGCGGCGGCGGTAGTCGTGA
AGAGGCAGACCGGTTCTGCCGCATCTGTAACCACCGTCGAAGCGGCTGCC
GCATGGCCATCATCGACTGACGATGACGAAGGCGCCATCAAGACCAAAGT
CATGGGCGGGGCGGCTTCTCGGGAAGAGCCCGACGCCGCGACAGCAGCGA
GCGGCACATCTTCGGAACGCGGCGGTGGCGTTTCTGCAGCGGCCGACGAA
GACGAGCCGCGGGGGGGTGACGCGGTCGGGGGCGGCACCCGGCGCAAGGG
GGGCGGGGCCGCGAGCGGCGGAGGGATGTCTCCAGGCAAAAGCGACCGCG
GTGGTGCAACGATCGAGGGCGGCATGAACGAGCATGGTAGAGGGAGGTCT
GCACCCACCAATGAAGACAGCAGTCGCGGTGACCACCGACAAGGTTGTGG
TCGTACGCACGGCCTCTCGCGACAGGAAACTCGGGCGAACGATACCATCG
ATAAATCAGACGCCGCGATGGGCGGGGACGCTGGTGCGCGAGGCCATTCG
AAACCGCATTCCGCGGACGGTGACAATAAACGCTTCCTGCGGCCATCAAA
GCCAGGGGAAGAGGCCCTCCTTCGGGGAGTGCGGGAGGGGCCGTTGAGGG
ACGCTCTTGCAGCCTTGTTGACCTCTACCGTCATGGGCGAGGACGGCGGG
AGGGTCCTGGCCCCGAGCTTCCCGTCCATCTCGGCCATGTGCGAGCTCAA
GTACAGCGAGCCGATCGGCCCACGGCAGGCGTCTGCCGTAGAGAGGGTTA
TTCTTGCAAGGTCCGTGATCTTGTCGTTGGTTGTTAGCATCAACCTCGCA
AACAGGCTGGCCAACGACAAGACGTCAGTGCGGTGCACGGTTTTCCATGC
AGGCCTGGCGTTCTCCTTCGGTTTCCCTTTTGTCTCTTTTCATTGTTTTT
CTGTGCTATGTATGCCACGGTACGGTTTTCCATTCAGGCCCGGCGTTCTC
CTCCGGTTGAGCCTGGCGGGAAAAAGGATCGGAGACCGAGGAGCCATGGC
GCTTGCCCCGGCTCTGGCCGCGGTTCGGAGTGTCGACCTGCGAAGCAACA
ACATCGGCGACGTCGGAACGACAGCGATAGCTTCGGCGCTGCGTGAGGCC
GCGGTGACGGTTCGGCTCGGCGGGGCAGCGGCGGGAGCGAATCACACAAA
GAACAGGTCGTGTATCCTGGAAACCCTTAGCCTTGCCGGCAATCGGATCG
AGGACGCGGGAGCTGCGGCTCTGAGCGATATGCTGGAGGCGCAAGACGAA
AACGACAAAGAATCGACGATAAACCGCCATTCTTGGGGAAGGAACGCGAC
GTCGGCGCCCGAGCTGTTTCCACCTCTGGTCTGGCTTAGCGTGGCGGGAA
ATCCGGGCATATCGGGTGACGCTAGAGAGCGGCTGCTTCAGGCGGGTGTA
CACCGCCAAGAAATGCGCCGCCATAGTGGGTCCGAGAACCAACAACCCTC
GATGGTAGTCATCGCGTAA

protein sequence of EsuBft124_9a-0001

>EsuBft124_9 ID=EsuBft124_9|Name=EsuBft124_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=572bp
MSNMRTTRILAAGKSVRRPTPEDRLQRKMEARAAAAAAAAARSTPSPAAA
KAGEATPPPLTALLTTSPKRSRLLPAAAAAVVVKRQTGSAASVTTVEAAA
AWPSSTDDDEGAIKTKVMGGAASREEPDAATAASGTSSERGGGVSAAADE
DEPRGGDAVGGGTRRKGGGAASGGGMSPGKSDRGGATIEGGMNEHGRGRS
APTNEDSSRGDHRQGCGRTHGLSRQETRANDTIDKSDAAMGGDAGARGHS
KPHSADGDNKRFLRPSKPGEEALLRGVREGPLRDALAALLTSTVMGEDGG
RVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLA
NRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVL
LRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREA
AVTVRLGGAAAGANHTKNRSCILETLSLAGNRIEDAGAAALSDMLEAQDE
NDKESTINRHSWGRNATSAPELFPPLVWLSVAGNPGISGDARERLLQAGV
HRQEMRRHSGSENQQPSMVVIA

mRNA from alignment at Scaffold_245:380100..382320+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft124_9a-0001 ID=EsuBft124_9a-0001|Name=EsuBft124_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2221bp|location=Sequence derived from alignment at Scaffold_245:380100..382320+ (Ectocarpus subulatus male Bft15b)
ATGTCAAACATGAGGACTACCCGCATCCTCGCCGCAGGGAAGTCTGTGAG
GCGGCCCACGCCCGAGGACCGTCTCCAGCGGAAGATGGAAGCCAGAGCAG
CAGCAGCAGCGGCGGCGGCGGCGCGCTCGACGCCGTCTCCCGCGGCTGCG
AAAGCGGGTGAAGCGACCCCTCCGCCACTGACAGCCCTCCTCACCACAAG
CCCAAAACGATCGCGATTGCTCCCGGCGGCGGCGGCGGCGGTAGTCGTGA
AGAGGCAGACCGGTTCTGCCGCATCTGTAACCACCGTCGAAGCGGCTGCC
GCATGGCCATCATCGACTGACGATGACGAAGGCGCCATCAAGACCAAAGT
CATGGGCGGGGCGGCTTCTCGGGAAGAGCCCGACGCCGCGACAGCAGCGA
GCGGCACATCTTCGGAACGCGGCGGTGGCGTTTCTGCAGCGGCCGACGAA
GACGAGCCGCGGGGGGGTGACGCGGTCGGGGGCGGCACCCGGCGCAAGGG
GGGCGGGGCCGCGAGCGGCGGAGGGATGTCTCCAGGCAAAAGCGACCGCG
GTGGTGCAACGATCGAGGGCGGCATGAACGAGCATGGTAGAGGGAGGTCT
GCACCCACCAATGAAGACAGCAGTCGCGGTGACCACCGACAAGGTTGTGG
TCGTACGCACGGCCTCTCGCGACAGGAAACTCGGGCGAACGATACCATCG
ATAAATCAGACGCCGCGATGGGCGGGGACGCTGGTGCGCGAGGCCATTCG
AAACCGCATTCCGCGGACGGTGACAATAAACGCTTCCTGCGGCCATCAAA
GCCAGGGGAAGAGGCCCTCCTTCGGGGAGTGCGGGAGGGGCCGTTGAGGG
ACGCTCTTGCAGCCTTGTTGACCTCTACCGTCATGGGCGAGGACGGCGGG
AGGGTCCTGGCCCCGAGCTTCCCGTCCATCTCGGCCATGTGCGAGCTCAA
GTACAGCGAGCCGATCGGCCCACGGCAGGCGTCTGCCGTAGAGAGGGTTA
TTCTTGCAAGGTCCGTGATCTTGTCGTTGGTTGTTAGCATCAACCTCGCA
AACAGGCTGGCCAACGACAAGACGTCAGTGGTGTGTGCACGCGCGTATTT
TAAGTCGAACCAATCGCTAAGTTGAATCGGCTGAACAATGAATAGACGTC
AAGCGCCCGTGCGAGGTAGTTGCGGTCCTTCGAGCGGGGGAACAGAGGTT
GGATGACGACGAGAACTCGAGGACGCGAACACAAACCTCAACCGCAACGT
TTTTCCTACGTGTTCGTGAACAAGGCTATACTCTTTACCGTGTTACCAAG
GTGTTACTATTTGCGGGTGTCAGTTTCCGACATACAGTGTTCATGGCCGC
TCGCTGACCATGTCTTCATTATTTTTCCGTGTCATAAATTGCCGTGGGTC
ACGGTTGCTGCTTCTCTAATTGAAACGAAGACTTCTCGAAGAGGCGAGCC
GTAATACTTCGTGCCCCTGTCCCGGGATGGTCATGCGCGGTCACCGCCAG
GAGGCGACGCCCTGTGATTTTGTGAGCTGAGAGAAAACAGTACTCACTTC
GTGTTCGTTATTTTTTCTGTGTTGTACCACAGCGGTGCACGGTTTTCCAT
GCAGGCCTGGCGTTCTCCTTCGGTTTCCCTTTTGTCTCTTTTCATTGTTT
TTCTGTGCTATGTATGCCACGGTACGGTTTTCCATTCAGGCCCGGCGTTC
TCCTCCGGTTGAGCCTGGCGGGAAAAAGGATCGGAGACCGAGGAGCCATG
GCGCTTGCCCCGGCTCTGGCCGCGGTTCGGAGTGTCGACCTGCGAAGCAA
CAACATCGGCGACGTCGGAACGACAGCGATAGCTTCGGCGCTGCGTGAGG
CCGCGGTGACGGTTCGGCTCGGCGGGGCAGCGGCGGGAGCGAATCACACA
AAGAACAGGTCGTGTATCCTGGAAACCCTTAGCCTTGCCGGCAATCGGAT
CGAGGACGCGGGAGCTGCGGCTCTGAGCGATATGCTGGAGGCGCAAGACG
AAAACGACAAAGAATCGACGATAAACCGCCATTCTTGGGGAAGGAACGCG
ACGTCGGCGCCCGAGCTGTTTCCACCTCTGGTCTGGCTTAGCGTGGCGGG
AAATCCGGGCATATCGGGTGACGCTAGAGAGCGGCTGCTTCAGGCGGGTG
TACACCGCCAAGAAATGCGCCGCCATAGTGGGTCCGAGAACCAACAACCC
TCGATGGTAGTCATCGCGTAA

Coding sequence (CDS) from alignment at Scaffold_245:380100..382320+

>EsuBft124_9a-0001 ID=EsuBft124_9a-0001|Name=EsuBft124_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1719bp|location=Sequence derived from alignment at Scaffold_245:380100..382320+ (Ectocarpus subulatus male Bft15b)
ATGTCAAACATGAGGACTACCCGCATCCTCGCCGCAGGGAAGTCTGTGAG
GCGGCCCACGCCCGAGGACCGTCTCCAGCGGAAGATGGAAGCCAGAGCAG
CAGCAGCAGCGGCGGCGGCGGCGCGCTCGACGCCGTCTCCCGCGGCTGCG
AAAGCGGGTGAAGCGACCCCTCCGCCACTGACAGCCCTCCTCACCACAAG
CCCAAAACGATCGCGATTGCTCCCGGCGGCGGCGGCGGCGGTAGTCGTGA
AGAGGCAGACCGGTTCTGCCGCATCTGTAACCACCGTCGAAGCGGCTGCC
GCATGGCCATCATCGACTGACGATGACGAAGGCGCCATCAAGACCAAAGT
CATGGGCGGGGCGGCTTCTCGGGAAGAGCCCGACGCCGCGACAGCAGCGA
GCGGCACATCTTCGGAACGCGGCGGTGGCGTTTCTGCAGCGGCCGACGAA
GACGAGCCGCGGGGGGGTGACGCGGTCGGGGGCGGCACCCGGCGCAAGGG
GGGCGGGGCCGCGAGCGGCGGAGGGATGTCTCCAGGCAAAAGCGACCGCG
GTGGTGCAACGATCGAGGGCGGCATGAACGAGCATGGTAGAGGGAGGTCT
GCACCCACCAATGAAGACAGCAGTCGCGGTGACCACCGACAAGGTTGTGG
TCGTACGCACGGCCTCTCGCGACAGGAAACTCGGGCGAACGATACCATCG
ATAAATCAGACGCCGCGATGGGCGGGGACGCTGGTGCGCGAGGCCATTCG
AAACCGCATTCCGCGGACGGTGACAATAAACGCTTCCTGCGGCCATCAAA
GCCAGGGGAAGAGGCCCTCCTTCGGGGAGTGCGGGAGGGGCCGTTGAGGG
ACGCTCTTGCAGCCTTGTTGACCTCTACCGTCATGGGCGAGGACGGCGGG
AGGGTCCTGGCCCCGAGCTTCCCGTCCATCTCGGCCATGTGCGAGCTCAA
GTACAGCGAGCCGATCGGCCCACGGCAGGCGTCTGCCGTAGAGAGGGTTA
TTCTTGCAAGGTCCGTGATCTTGTCGTTGGTTGTTAGCATCAACCTCGCA
AACAGGCTGGCCAACGACAAGACGTCAGTGCGGTGCACGGTTTTCCATGC
AGGCCTGGCGTTCTCCTTCGGTTTCCCTTTTGTCTCTTTTCATTGTTTTT
CTGTGCTATGTATGCCACGGTACGGTTTTCCATTCAGGCCCGGCGTTCTC
CTCCGGTTGAGCCTGGCGGGAAAAAGGATCGGAGACCGAGGAGCCATGGC
GCTTGCCCCGGCTCTGGCCGCGGTTCGGAGTGTCGACCTGCGAAGCAACA
ACATCGGCGACGTCGGAACGACAGCGATAGCTTCGGCGCTGCGTGAGGCC
GCGGTGACGGTTCGGCTCGGCGGGGCAGCGGCGGGAGCGAATCACACAAA
GAACAGGTCGTGTATCCTGGAAACCCTTAGCCTTGCCGGCAATCGGATCG
AGGACGCGGGAGCTGCGGCTCTGAGCGATATGCTGGAGGCGCAAGACGAA
AACGACAAAGAATCGACGATAAACCGCCATTCTTGGGGAAGGAACGCGAC
GTCGGCGCCCGAGCTGTTTCCACCTCTGGTCTGGCTTAGCGTGGCGGGAA
ATCCGGGCATATCGGGTGACGCTAGAGAGCGGCTGCTTCAGGCGGGTGTA
CACCGCCAAGAAATGCGCCGCCATAGTGGGTCCGAGAACCAACAACCCTC
GATGGTAGTCATCGCGTAA