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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | EsuBft124_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 253 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-15_000810.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft124_5a-0001 ID=EsuBft124_5a-0001|Name=EsuBft124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2537bp|location=Sequence derived from alignment at Scaffold_245:421625..426798- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACACACACCACGCGTCCGCCGAGACGCACCCCCGATCGAAAACGTGATG CGAGCTGGTGTGACCCCCCTGTTTCTCCTTGTGAGCGCAGCTAACCCTCT GGTTGGATGGTGTTTGTTAGTTAGGCCAGCACACACAACAACGTCGCGTC GAACATCCTCATCGTTGTCAAGATCTGCCGCTGACCTACTGCCGACGGCT GCAGGGACACCCGACGGTCGGCGGCAGCGCTTTTACAGCTCCAGAACCAG CACTAGTCGCGGCTACTACAAAGACGAAGAACAGGACCATGAGGCGCCGC CGCCATCACTTCGACGAATACCAAACCACGCCCAGCTACCTTCGCTCGTC CAGGACACCAACGCCGTCACAACCACCACTACCGCCGAAACCGTCGTATC TTTAGCGAGACAAGCGCTAGCGACGGTGGCGCTAGCGGCTGCCCTCACGC CGGCGGTGTTCATCGGCGAGGTGACGGTTTCACCGCTGCTGGCGGGAAAG GGTGGGGTTCCGCCGCCTACTTCTGCGTTCGCTGAGCTGGAACCTTTACC GCTGAAGTCGTACTCGGAAGAGTTTTCCAGTGGGCTTGCACCCGTCAACA CTGTACGCGGTTTGTGGCGAACCCGCGAGACCCGGAACGACGGTTCCTCG CTGCCTCAGGAAGCGGGTAGACTAGGCAGGAAAGGAATCTGTGGGGGGCG GCTGTCCTTCAAGGGGTTCGTAGGGGCTGGGAAGGGAACAGTCGAGTACA AGGGGTGTGGGGACCGAGAGGGGAAAGGGAGGTGGCTCACCAAGCCCAAG AACATCGTGAACGGAAGGATAACGCTCTCCGCACGATGGAGCGTCAACTT CACCGACGGCACAACCCTCTTCTACCGGGGGGACGTCGTACAAGACGCGG AGGCTCAGGGGACGGCCCTCACCGTCGATACAAGCGGCGCGGCGGCCATG GGGGGCCCGGCGTTCGAGAGGCCCGACGCTCACATACGCGGGGAGGTGTT GCGTCCGGTGAAGAACATCCAGGGCAGCCTTACCGAGAAGAAGATAGGGG AGTTTGAGGCGGACTTGATAGAGTTGCCGAGCGACGAAGACAAGTTGTGA CGGGGGGTTGAGGACCACACCCCAAGAGTTGCACGGTTACCAAGTGGGGG ATCGTGGTGCTCGAAGACAAGATTTTTCGATGGAATGGGCAAGCCCTGTG GTACGAGATCCGTTTGTTGCATGGTACCTCCTGCTGTTCGTACGAGCGGG ACGGCACTGCTGTTGCCTGTGACGGGGTTGTTTGGAGCTCGTGTAGGGCA AGCTCCCCTGTCAAAGTCCTATGGGCCAATGCACTCCTTCGGGGCTACCA CAATGTAATATTTATACTTCCAAATTTATGGACGCTCGTCGAAAAGCGAC TCGCCGTGTCCGAAACCTACGGAGTGGCCGCACCCGTCTACTCTGTCATG ATGACCTACATACATGTAGATGGCAGGAGAGGCGCCCTACATCCTCACCG CACTCACTGCAACGAAGTTTTGTGCAGGTTTATCTCAGGTGTCGGATACT ACGGTGTGTCTTCCGCCGCGAGAAATAGGGGCTTCGATGGACACCTCAAT GAACACCCCTACCCTCAGGTCATAGCCGTTAGGGAGTCGTGCGGCTTTGC CTCGCAACCTTTTGTTTACGATGGTGCTCTTGTCGCGAGGAGCAAGTGAG AACTTCGCCGGCCGGCACAGTAGTGAGGTTTCTCGTGTGGCTACTACTGT TGTTTCCCGCGAAGAAAAGAGCGAAAAAAGTTGGATGCCACAATGACCAA TCAACCAGTCAAGGTTCCTGGAAACTTGAGCGGTCGTTCTTTGGGTGGTA TAGTTCTTGCGGTGGACTGTGAACACACACGGCCGCACCGCCGTGATGGT TTTTTTTACGAAGACTGTCTTTCGCGCGGTTCAGAACTCCGCCATGTTCA TGCTGGCGCTCCTCACTACACTTTGGCAAGGTGACGGAGCCCGGAAGGGC CACACCTCTTACGGCTGGCATTCACCAACCATGCACCCTCCCGTTGTTCT CAGTACAGCTCCTTCTTTTTCTTCGAGCCGGCCACGCAGAATGATGGCTG TCATGTGCAGCTTCGGGGGGTACACTCTTCTTGTCTTTGGATATTTGAAA GATATTTCACCACCGCGGTGGGATCGTACTTGTATCCTTCAGGAATTTCC CTTGCAAAGACTGCCAGCAGATGGCTAGGCTCAGGCCACTGTTTATGGTG GCGGAATCTCAATCTTAATCTTGATTTTTGGTAGGGGGGGGGGTCGATTC GAGAAATATCTCGGATGTACACTTGTTATGGAGTCCAAATCTTGCCTCAA AATATTGGCAAGATTTGGAATGAAACCAACGAGCCCCCTTTTGCCCAAAT ATTTCGCCAAGATTTGGGCGCTGGCAGCCTTGTCAAAATCTTGCCGAGGG GGGGGGGTCAATAGCGCCGCACCGTTCCAGACCGTCCACATAATCAGCGA GTGCGACCTGGGTTCTTGACGTATCGCTCCCATCAAG back to topprotein sequence of EsuBft124_5a-0001 >EsuBft124_5 ID=EsuBft124_5|Name=EsuBft124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=350bp
MRAGVTPLFLLVSAANPLVGWCLLVRPAHTTTSRRTSSSLSRSAADLLPT AAGTPDGRRQRFYSSRTSTSRGYYKDEEQDHEAPPPSLRRIPNHAQLPSL VQDTNAVTTTTTAETVVSLARQALATVALAAALTPAVFIGEVTVSPLLAG KGGVPPPTSAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGS SLPQEAGRLGRKGICGGRLSFKGFVGAGKGTVEYKGCGDREGKGRWLTKP KNIVNGRITLSARWSVNFTDGTTLFYRGDVVQDAEAQGTALTVDTSGAAA MGGPAFERPDAHIRGEVLRPVKNIQGSLTEKKIGEFEADLIELPSDEDKL back to topmRNA from alignment at Scaffold_245:421625..426798- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft124_5a-0001 ID=EsuBft124_5a-0001|Name=EsuBft124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5174bp|location=Sequence derived from alignment at Scaffold_245:421625..426798- (Ectocarpus subulatus male Bft15b) AACACACACCACGCGTCCGCCGAGACGCACCCCCGATCGAAAACGTGATG
CGAGCTGGTGTGACCCCCCTGTTTCTCCTTGTGAGCGCAGCTAACCCTCT
GGTTGGATGGTGTTTGTTAGTTAGGCCAGCACACACAACAACGTCGCGTC
GAACATCCTCATCGTTGTCAAGATCTGCCGCTGACCTACTGCCGACGGCT
GCAGGGACACCCGACGGTCGGCGGCAGCGCTTTTACAGCTCCAGAACCAG
CACTAGTCGCGGCTACTACAAAGACGAAGAACAGGACCATGAGGTGGGTA
GCTACGCATCTATCTTGGGTTTTCATGCTTGCTGCCCAGCATGTTGGATG
TTTTGAGATGACACATGAAGCTGCCGTAAACTAGACTAGACAAAAACATG
CGAGAGCAATTAATCGATCGACATGACTCTGCTGTATACCACCTGACCAT
CGCCCCCGTTAAGTAGTGGGTATCGCAGCTCCTGGCACCACTGCCACCCC
ATATGCTCGACATTCTGCCATGCGTGGTAGAACTACTCCTACCACAGTAG
TTTGCCATGCGTGGCAGAACGACTCCTACCGTACTAGTCGGGGAGAAACA
AAACCCCCCAAAATGGGTCATTTGAACCCGATTGCAGCGACACATTCACA
TGATGGTAACTGTACCGAAATGAGCGTGTAGTAGGCCGTCCTGTACTAGC
ACGCCGAAGGCGATGCCAGTGGTTGCAGCATGTTGCCCGATTTCTAACAA
GACATTCCTTCTGCAAGCGGTGATATTGTCAACCCTGTCTTGGTACCGTT
TGGCAGATTGTCCGCACCTCCCTCCCGATTCCGCTGTGACGAGTATCCCT
AGGACTATTCTCACTATGGGAGGGCCCCATGACTGTGAAGTGGTATGCAC
AAGAGCGTCACAGCACACAGTATTGTTGGATGCAGCAGCTTTAGATGAGA
AGATCGATTCTCAGTGATGACCTCGGCCCAATTTCGGCCTCACGGTGAGC
ATGGAGAGACTGCCCAAATGATCGTGATTGTCCCATCCACGCTGGACGCC
GGTCCACCCCTCACGGCAGACATATGATTTGGCAAACCTGCCGGGTCACA
CAGGAGGAAGGCCTTCAACAACCACACGATTTTTCTTCTTGCAGTCTTCG
ACCTTTGACATGCGGTTCGGACGGTGCACTGCTGTATGTACGACACATTC
ACGAAATCAGCGAGGCGACAACATGAGCCCCGGGAACTGTTCTTCTCCGT
GTCATCTCCTATGGTGTTTGCCTCCCAAGTTTTCGTGAAAGATAACGTAC
CTCCGGCCTCTTGTGTGTGTGCCGAGTTTGTGCCGCGCTGCATGTCCGGC
GTCTGGCGGTACGCCCAGTGTCTCCCTGTGAGCAAAAGGTGCGCTTCAGG
AAGCGTATTCCACCCCGCTTGATCGCTCCCCTCCTCCATACTACTTCTGC
CGTTTCCTCTCATGTATTTTCACCCACATATTCCCTCTGCAGGCGCCGCC
GCCATCACTTCGACGAATACCAAACCACGCCCAGCTACCTTCGCTCGTCC
AGGACACCAACGCCGTCACAACCACCACTACCGCCGAAACCGTCGTATCT
TTAGCGAGACAAGCGCTAGCGACGGTGGCGCTAGCGGCTGCCCTCACGCC
GGCGGTGTTCATCGGCGAGGTGACGGTTTCACCGCTGCTGGCGGGAAAGG
GTGGGGTTCCGCCGCCTACTTCTGCGTTCGCTGAGCTGGAACCTTTACCG
CTGAAGTCGTACTCGGAAGAGTTTTCCAGTGGGCTTGCACCCGTCAACAC
TGTACGCGGTGAGAGCCATTTTCCGCTGAGTGTCGTCGTTGTTGTTTTTA
TTGCCTTCACATGAAGAACCGTTCCGATCTCTCTACCCAATACCTTCATC
TGTCCCGGGTTCTTTTGGCATCCTCCGGGCGTAGGTGATGATTCGCCCGA
TCGACAGGGGTCTGGACAGAAGAAGCATTGAGTCGGGGGGCACAAGCGGT
GCCAATCTGCTTAGGCCATAGGCTCGGGGTTCCATGGCACTCTGTTGGCA
GAGAGTTCCCACTGTTTGACACGTTTTCGCTGGGTGTTCCCTCGGTGTTT
TCGTGCACATGGCCTCTTGGATGCCAACCTTGTTACAACCTCGTGTTGGT
CTCGTGTGATGTTAATAATTGATTATTCACTTTGCCATTTCTTGTACGCC
TTCCTGCGCTAAAATTGGTGCGTGCCCAGAGTATCACACCATCGCCAACG
AACTGCCTTCGCGATATGAACCGATTCGCAGCATACGCCAAAGTTGACCC
ACATGCGTGCCGTACGTATGCAAGGTTTGTGGCGAACCCGCGAGACCCGG
AACGACGGTTCCTCGCTGCCTCAGGAAGCGGGTAGACTAGGCAGGAAAGG
AATCTGTGGGGGGCGGCTGTCCTTCAAGGGGTTCGTAGGGGCTGGGAAGG
GAACAGTCGAGTACAAGGGGTGTGGGGACCGAGAGGGGAAAGGGAGGTGG
CTCACCAAGCCCAAGAACATCGTGAACGGAAGGTGCGTTCGTTGGCCTTG
GTGTGCAGCTTGAGTTTGTGTGTGTTTGTCGTTGTTCATGAGAAAGGTGC
ACCTCAACGTTTCTACACTTGAAAAAAAACTAGAGCATACCAGAGCTCGT
GTGCGTTTCAAAACGCGCACTTGACGTCCTCGGAAGCGCATCGTGCAACG
CGGCGGACCTTTAGGCGTGCTTAGAAACACTTCGTTGTCCGGCTCGTTGT
ATCACTGACAACCTGACCAGCATCTTGCGTGTTGGTCGAGGTGATGGGCG
TTGTGATACTTCGCGCTTCTCAATGTTTCGTGTGGTTGATACTTGCTCCC
GGCCCCCCCGCCATACACACACGCTTCCCTCCCCTCCAACGATCAAGGCC
TCTCAAGTTCTTTGGGGAAGGCAACACCTCTCGATGATTTGGGAACAGAG
CAGTGAGACTGCCGTGCTTTTTGTTGTGCTCAAGCCTGAAGCAATCGTTA
CCATGCCCATGTTTTACCTCTTTCCACTTATGTGATGGTCTGTTTCCATG
ATGGTCCGGTTGTTCTTGAGCCTAAAGCATTTGTCTCTTTCCACTAACGC
AACGGTCTGTTTTCCATTGACGCGACAGCTACATTCCTACATCGTTCCCT
CCACCAGGATAACGCTCTCCGCACGATGGAGCGTCAACTTCACCGACGGC
ACAACCCTCTTCTACCGGGGGGACGTCGTACAAGACGCGGAGGCTCAGGG
GACGGCCCTCACCGTCGATACAAGCGGCGCGGCGGCCATGGGGGGCCCGG
CGTTCGAGAGGCCCGACGCTCACATACGCGGGGAGGTGTTGCGTCCGGTG
AAGAACATCCAGGGCAGCCTTACCGAGAAGAAGATAGGGGAGTTTGAGGC
GGACTTGATAGAGTTGCCGAGCGACGAAGACAAGTTGTGACGGGGGGTTG
AGGACCACACCCCAAGAGTTGCACGGTTACCAAGTGGGGGATCGTGGTGC
TCGAAGACAAGATTTTTCGATGGAATGGGCAAGCCCTGTGGTACGAGATC
CGTTTGTTGCATGGTACCTCCTGCTGTTCGTACGAGCGGGACGGCACTGC
TGTTGCCTGTGACGGGGTTGTTTGGAGCTCGTGTAGGGCAAGCTCCCCTG
TCAAAGTCCTATGGGCCAATGCACTCCTTCGGGGCTACCACAATGTAATA
TTTATACTTCCAAATTTATGGACGCTCGTCGAAAAGCGACTCGCCGTGTC
CGAAACCTACGGAGTGGCCGCACCCGTCTACTCTGTCATGATGACCTACA
TACATGTAGATGGCAGGAGAGGCGCCCTACATCCTCACCGCACTCACTGC
AACGAAGTTTTGTGCAGGTTTATCTCAGGTGTCGGATACTACGGTGTGTC
TTCCGCCGCGAGAAATAGGGGCTTCGATGGACACCTCAATGAACACCCCT
ACCCTCAGGTCATAGCCGTTAGGGAGTCGTGCGGCTTTGCCTCGCAACCT
TTTGTTTACGATGGTGCTCTTGTCGCGAGGAGCAAGTGAGAACTTCGCCG
GCCGGCACAGTAGTGAGGTTTCTCGTGTGGCTACTACTGTTGTTTCCCGC
GAAGAAAAGAGCGAAAAAAGTTGGATGCCACAATGACCAATCAACCAGTC
AAGGTTCCTGGAAACTTGAGCGGTCGTTCTTTGGGTGGTATGTTTAACCC
GGCGTAAAGCTCACCGTCATTTATCCCATTGCTTAAAGGAAGGCAAAAAA
AACATGCAGATTGGTTCTATGGAGCCCTCTATTCTGGGTAACCGGAGAGT
CCAGAGTGTGGTGGCTAGTGTGTCCGTGCTCCGTGAGTCTCCACATCCTG
ACCTCCACCACAGTTTTCATGTAATATAGCTCTCTACAGACTAGACTATA
CTCTCATGATGATAACAACCAAAGAAGCTGTTGAGATCAACACCCCATGT
CTAGCATGACCACGGTATCTTGTGCCGTGGGCAGGTATAGTTCTTGCGGT
GGACTGTGAACACACACGGCCGCACCGCCGTGATGGTTTTTTTTACGAAG
ACTGTCTTTCGCGCGGTTCAGAACTCCGCCATGTTCATGCTGGCGCTCCT
CACTACACTTTGGCAAGGTGACGGAGCCCGGAAGGGCCACACCTCTTACG
GCTGGCATTCACCAACCATGCACCCTCCCGTTGTTCTCAGTACAGCTCCT
TCTTTTTCTTCGAGCCGGCCACGCAGAATGATGGCTGTCATGTGCAGCTT
CGGGGGGTACACTCTTCTTGTCTTTGGATATTTGAAAGATATTTCACCAC
CGCGGTGGGATCGTACTTGTATCCTTCAGGAATTTCCCTTGCAAAGACTG
CCAGCAGATGGCTAGGCTCAGGCCACTGTTTATGGTGGCGGAATCTCAAT
CTTAATCTTGATTTTTGGTAGGGGGGGGGGTCGATTCGAGAAATATCTCG
GATGTACACTTGTTATGGAGTCCAAATCTTGCCTCAAAATATTGGCAAGA
TTTGGAATGAAACCAACGAGCCCCCTTTTGCCCAAATATTTCGCCAAGAT
TTGGGCGCTGGCAGCCTTGTCAAAATCTTGCCGAGGGGGGGGGGTCAATA
GCGCCGCACCGTTCCAGACCGTCCACATAATCAGCGAGTGCGACCTGGGT
TCTTGACGTATCGCTCCCATCAAG back to topCoding sequence (CDS) from alignment at Scaffold_245:421625..426798- >EsuBft124_5a-0001 ID=EsuBft124_5a-0001|Name=EsuBft124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1053bp|location=Sequence derived from alignment at Scaffold_245:421625..426798- (Ectocarpus subulatus male Bft15b) ATGCGAGCTGGTGTGACCCCCCTGTTTCTCCTTGTGAGCGCAGCTAACCC TCTGGTTGGATGGTGTTTGTTAGTTAGGCCAGCACACACAACAACGTCGC GTCGAACATCCTCATCGTTGTCAAGATCTGCCGCTGACCTACTGCCGACG GCTGCAGGGACACCCGACGGTCGGCGGCAGCGCTTTTACAGCTCCAGAAC CAGCACTAGTCGCGGCTACTACAAAGACGAAGAACAGGACCATGAGGCGC CGCCGCCATCACTTCGACGAATACCAAACCACGCCCAGCTACCTTCGCTC GTCCAGGACACCAACGCCGTCACAACCACCACTACCGCCGAAACCGTCGT ATCTTTAGCGAGACAAGCGCTAGCGACGGTGGCGCTAGCGGCTGCCCTCA CGCCGGCGGTGTTCATCGGCGAGGTGACGGTTTCACCGCTGCTGGCGGGA AAGGGTGGGGTTCCGCCGCCTACTTCTGCGTTCGCTGAGCTGGAACCTTT ACCGCTGAAGTCGTACTCGGAAGAGTTTTCCAGTGGGCTTGCACCCGTCA ACACTGTACGCGGTTTGTGGCGAACCCGCGAGACCCGGAACGACGGTTCC TCGCTGCCTCAGGAAGCGGGTAGACTAGGCAGGAAAGGAATCTGTGGGGG GCGGCTGTCCTTCAAGGGGTTCGTAGGGGCTGGGAAGGGAACAGTCGAGT ACAAGGGGTGTGGGGACCGAGAGGGGAAAGGGAGGTGGCTCACCAAGCCC AAGAACATCGTGAACGGAAGGATAACGCTCTCCGCACGATGGAGCGTCAA CTTCACCGACGGCACAACCCTCTTCTACCGGGGGGACGTCGTACAAGACG CGGAGGCTCAGGGGACGGCCCTCACCGTCGATACAAGCGGCGCGGCGGCC ATGGGGGGCCCGGCGTTCGAGAGGCCCGACGCTCACATACGCGGGGAGGT GTTGCGTCCGGTGAAGAACATCCAGGGCAGCCTTACCGAGAAGAAGATAG GGGAGTTTGAGGCGGACTTGATAGAGTTGCCGAGCGACGAAGACAAGTTG TGA back to top
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