EsuBft124_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_3a-0001
Unique NameEsuBft124_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:438592..443997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft124_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Length231
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_000830.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3aEsuBft124_3aEctocarpus subulatus male Bft15bgeneScaffold_245 438592..443997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3a-0001EsuBft124_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 438719..442543 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3a-0001-exonagat-exon-94809Ectocarpus subulatus male Bft15bexonScaffold_245 438592..438759 +
EsuBft124_3a-0001-exonEsuBft124_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 438973..439017 +
EsuBft124_3a-0001-exonagat-exon-94808Ectocarpus subulatus male Bft15bexonScaffold_245 439275..439368 +
EsuBft124_3a-0001-exonagat-exon-94810Ectocarpus subulatus male Bft15bexonScaffold_245 440333..440415 +
EsuBft124_3a-0001-exonagat-exon-94811Ectocarpus subulatus male Bft15bexonScaffold_245 441546..441711 +
EsuBft124_3a-0001-exonagat-exon-94807Ectocarpus subulatus male Bft15bexonScaffold_245 441888..442064 +
EsuBft124_3a-0001-exonagat-exon-94806Ectocarpus subulatus male Bft15bexonScaffold_245 442418..443997 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3a-0001-exonagat-five_prime_utr-1576Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 438592..438718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3a-0001-cdsEsuBft124_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 438719..438759 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_3a-0001-exonagat-three_prime_utr-2371Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 442544..443997 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_3a-0001 ID=EsuBft124_3a-0001|Name=EsuBft124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2313bp|location=Sequence derived from alignment at Scaffold_245:438592..443997+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAAGCGACCATCGGAAGTGCAAGGGAAACCACCACCACCATCACCCAGGC
AGCAACCACCGCCGCCGAAGCCCGTTCAGGAAAAGCCGAAGTAACCAGCG
CCTAGGGAGAGCAAGAGTTACTGCACCATGGGGGGTTACGAAGGGCAGAA
CAAGCGCGCGCTCATCTGGGCTGCTTTGTACTTCTTGGCATGGATTCTGC
AAAGATTGTGGTGCCACCTGGGCCTGCCCGACCACTGCGACCTCGCGATG
CGGCCATTGGACGTGCTGACGGATTTGGTGGTGCTCTTCACCTTCTCCCT
CGCACAGGCATACTGGTGTGAGATCTTGCTAGACGACCGTTTCGAGGAGC
TCAAGAAGGCTCCTTGGATTTTCGGCGTCATTCTCCTCACGCCAATTATC
ATCTCGGCCCTTGGGCGTATCGATGGACTCGAGAGGTGGGACAAGGACAA
CGAGGGCCGAGACTTCGAGTTCTCCGCCCTCCGATCGACCATCTTCGTCT
TCGGCCTTATTGCCGCCGTGCTCATTGTAGCGTGGCACTTCGCACGGGCG
TGGCTGACTCTTCCCGGCATGCAGCTGGTGTCGGGAGGCGTTAAGGTCGA
GCCGCCTAAGGAAGACCTTCACGGCATCTACGCCTCCAGCCGCATCGTCA
TCATCGCGTGGTGCATCCTCTTCACTTCGTTCATCATCTCCGAGGACGAC
GGCTTCGATTACAGAGGCGCGCTACTCGCATGGATGCTGTCCCTGATTGC
GGTATTCCCGCACCCCGTGAGTTACGCCTGGCTCGGTGTCAACACGGGTA
TCTTCTTGCAAGGGATCGGTGCCAACCGTCTCCGGTTCCTGGGGTGCAAG
GAATGGTGAACGCGTGATAATCGTCTTACGACTGTTGTTCTTTTGTGTGC
GGGGGAGACAAAGAAGTGCATCGCGGAGCGGACTTAGTCGCCCGCGATGT
CGTCTGAGGCTTCGCGATATCAGTGGCGTACTGTGAAATTTTCTGCTGGC
TAGTGTGAGCTAGGGTCATGATGATGGTGTGGGGAAGGTTACGCTTGCGC
AGCTGCTACACTTTTCGTTTGGTCGAGAGTTTTTGGCTGAGGGATCATGG
GGCCCATAACAGGTTGGCGTTACACCGATACCCGCTCACACGACGAATTG
TGTGAACTGACAGTTTCGTTGTGAGTCGGTAGGGTTTCGGCGGTTTGTTT
GGGCGCTACCTTGTTGGATTATTCCAACTGTTCGGTGCCACATATTTTCT
TTGATTTCGGTTCTTCGTTGAGGTACCCACTCCGAATCTTCACCGATATG
GTCGGGTCCGATTTATTCATGATTTTCGCTTGATTGTCGTTTTTGTGTCT
GTATTCGATTTGACAGTGAACGGGCAGGCAGCGTGCGCTTCGTTGGACTT
GGGTTGAGGGAGGTTGGGCCTCTGCGTTGTTTGTTCGTGAGAAAGCACCA
AGCATCCATGAACGAATCATGCCGTAGGGGCGTTGGCGGGTTTTACTGAT
ACCACGCCACACATCATCGTGAGTGTGAGCCGATGGTCCGCTCCTCACGA
TGAGAAACGCCTCCCAGGAAAAGAATAATATCTCACGCGTCGTAGCTACA
ATCAGTCCGAATTTCAGACCGCCGAGAGCGTCTCGGAGTTTATATGTTGA
TTTTGGCGGGGAGGATATTACAAAGAGGATCTGAGAGTACAGCAGTACCA
ACGTTGGTTGCGCGGGCTTGGGGGTGGGGTGAATGAAGTGAAAGTGTCTT
GTTTCTGGGAACAATAATAGTAGTGTTGTGGTGTCTGTCCCAGAATTCAA
GGAAGTTGAAGCGTGGTAAGATGTTAATTTGACTTCTTGGTGCTTGTATT
TATAATTTCGTTCCGGGGAGGACCAGACGGGTTCTCTGCTCAATCAAGGT
GCTGCCATTTATTTGCAGGCGCGAAGACGTGACCGACAGCTAGCTGTAGA
TGTCACGGCCTCTTTCGACATCTTTCTCCGGTGTGATCAGTGTAGTCTGG
CGTGTGGTACCATAGAACAACGGTTACGCTAGTACGCACGCGGTGGCGAC
GCAGCATGGCACGGTATGCGGATGTGGCGGTTAGATGACCTGACTCTGGC
GATTCGAGCCATCCTTTTGAAAAGGATGGCCATTTTATTACACGTGCATG
CAAGTTAATCTACTTGCATCGTTGCGTTCCCTGTCGGTGCCGCCTTCTTT
CGTGCTGTTTTTCCGCTTTTGTTTCTTGAGAGGGAAATTCTTTCTTATCT
GAAGGAGGTTGTAGGGGTCTTATCATGGATGTGGCGTTGCATCAAGGTGC
TGCCATTTATTTG
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protein sequence of EsuBft124_3a-0001

>EsuBft124_3 ID=EsuBft124_3|Name=EsuBft124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=243bp
MGGYEGQNKRALIWAALYFLAWILQRLWCHLGLPDHCDLAMRPLDVLTDL
VVLFTFSLAQAYWCEILLDDRFEELKKAPWIFGVILLTPIIISALGRIDG
LERWDKDNEGRDFEFSALRSTIFVFGLIAAVLIVAWHFARAWLTLPGMQL
VSGGVKVEPPKEDLHGIYASSRIVIIAWCILFTSFIISEDDGFDYRGALL
AWMLSLIAVFPHPVSYAWLGVNTGIFLQGIGANRLRFLGCKEW
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mRNA from alignment at Scaffold_245:438592..443997+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_3a-0001 ID=EsuBft124_3a-0001|Name=EsuBft124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5406bp|location=Sequence derived from alignment at Scaffold_245:438592..443997+ (Ectocarpus subulatus male Bft15b)
TAAGCGACCATCGGAAGTGCAAGGGAAACCACCACCACCATCACCCAGGC AGCAACCACCGCCGCCGAAGCCCGTTCAGGAAAAGCCGAAGTAACCAGCG CCTAGGGAGAGCAAGAGTTACTGCACCATGGGGGGTTACGAAGGGCAGAA CAAGCGCGCGCTCATCTGGTGAGAAGGGGCGTGTGTTTCGCGCCGTATTC ATTTTCCGACGCTTGTCGCCCTGGAAGGGACCATGGCGTGTGCTCCGGCC CATGCTGCTGCCGTTGACGGCTGTGCATGCGTGCGGCAACGTTGTGTGCG ATAGCGTTCCTTGCACCAACCCTCTCTCGTCCCTCTCTCGCACTTGCCGT TTGTCAAAACCTCTTGGCTCTGTTGCGACAGGGCTGCTTTGTACTTCTTG GCATGGATTCTGCAAAGATTGTGGTGGTGAGTGCTCAGCCTGCTGCGTGC TTGGGCGCCATCCACCACTTGGGTCCTGCTCGTAGCAAGGTAGTAGGCCC CGTAACTAGTCCTAGTATGCTCTACCCTTTTTCGCCCGAGGCGAGCGCTG ATGCCGGACGCAGATTTTGCTGGTCGCGCAATTTTTTTCCTGTTGTGACA AAATTGGTCAACGGCCAAAAAATGTCCTGAACGCTTGCGCCTGACACCTG GTGCCGCTGCATCTGCGTGTCCATCTCCTACAGCCACCTGGGCCTGCCCG ACCACTGCGACCTCGCGATGCGGCCATTGGACGTGCTGACGGATTTGGTG GTGCTCTTCACCTTCTCCCTCGCACAGGTAGGGATGGAGGTCCATCTGCG TGGTAGAGTACAGATGTAGTGGTTGGCAGGATCACCTCCTGACAGCATGC ATATCGATCCGTGCACATTCTGTCTTGGGAGCAACCGTGGAACACACACG CACGCACCCTTGTCGCGCAACGGTCAGCGATTTTTGGGATGGATAGCTGT ACTGCTGTTGTTCATTTACCCTCGGTCTTCCGCGTCATGACAAGAGAAAC CTTTTTGGCAGTAGCATCGGTGTTCCATCGGCACAAGGGAACAATATTAA AGTCTAGGCAAAACAGACCGCAGTTCCCGCCCTGTTCCTGTTCCTGCGAC TCATTGTGCTCGCCAAAAATGCGCAGCAGCGGCATCATCATCATCATCTG CAGCTAGAAGCTGCCATTGTTCAATGGTGGCTTGGCACCTGGCAATGCCG CTTTCTCCGGCCTTCCTTTCATGCATTCGTCGAATGGCCGTTCGTGATTC CGACATCCGTGCTTCGCACTATTAGACTAGGTGGAAAAAGCGGGATTTCT TTCGTCGCGCTCTCTATCATCCAGAATGTGGGAAGGGTTGAACGGCTGTC CCATGCATGTTGAGAAGCTGAAGTGGACGTAGCATATGATAGGGTCACAT CCGAAAACATGCCCATGCTAGCAGATGCCCACGCTGGCAGGCGGCTAATG TGTAGTGCATTTCCTCGTGCCCCAAGCGGTAATCTCGTGCGTCAGTAGTG CCAAGCCGAGACAATACATGACGTGCAAATCAGCAAATATGTTATTCCGT CGTCCTTGAGGGTACGTATCGCTGCCTACTTGGTCGCGGTCGACATTTTT TGTTCGAAAATATACGCAATCTCACAGGAAGACTGCCCGTTCGAATTAAA CCCTGCTCCATCTACACGCGCATCATACCCACTGCTGTTTTCCCATGCTC CTCGCTCGCATTTTATTTTTATGGTGGTCCTGCTGATGCAGGCATACTGG TGTGAGATCTTGCTAGACGACCGTTTCGAGGAGCTCAAGAAGGCTCCTTG GATTTTCGGCGTCATTCTCCTCACGTGAGTGCCTCCACACACACCATGAT ATGTGCACCCTTTGTTGCTGTGTGTTGTGTGTGTGTGTGTGCGTGTGCTT TGTCTTCACTTCAAATCAGCGCTCACAGCACTATTATAGTGCTGTTTTCT CCAACCCGTGGACACACAGAAGAGCCCCTCTTTACCCTCCCCTCCTGCGG TACTTTGCCTCCGATTATTAGTGCGAAAAGAGCACATCACTCTCTTCCCT CTACGTACACACGACCTAGCGCCATCCACTAGGCCAGGAGCGGAAGCGAG TGAAAAACTCTCCGAAAGCTCGCTTACGCCGGGGTTCGAACCCCTGACCT GACCTCTGAAAGGTTTCGAGGTTACCAAGTAGACCACTGGGGCGACCGGT GTGTTAAGTCATCTCGGAACAGCATTGTTATCGCACAGCAAGTTTCCACT TTTTATTTCAGCCTCCTGTTTTCGAGTTAGGGCTAGCGTCAACAAACACT ACGAAAAATACGTGCACTCTTCCTTCATGTTGGGTGGTTTCGAACTACAG ATGTATGCTTTCCTCTATACGACTTGGGGCTCAACACACACCGTACAAGT GCACGCTTCAATCATGTTGTCGATGCCCATAGCACGGTTAATCTTTTTGA TTTGAGAGTTTTTCGGGATTGACGCGAGGTACGAGGGATGTTGGTATGTA CCTACACCGACTACAGTAGTCCTACCGGCGACCCCTCGAGCTTCTAATAA ATAGTACTAGCAGTAGTCCAGTTTGTAGATGTGCCGTCCCAGAAATACCA CAGTAGTCGAAGCTACGGGTGTACAGGTGTCAACGCGAGGAGGGAATGGG TTGCCACAAGCCAAGGGTCGGACTTGCTGTATATGATTGGTCTGTTGGCC TTCATGAACAACCATAAAACAAGGAAGTCACCGTACACATTTGTGGTGTC TGTTGCGACCCTAAAAAGGCGAGACGGAAACACACACAAAAGCACAACAA ACCGCGAGGGGCTTCCGCTCGACGTCGTGTTCCTTGGCACTTTGCGGTGT TCCTTGGCACCATGCGGTGACTTTCTCTCCCCATCTCATGCTCCTCTCCG TCACTACTCTGACCTGCCACGCTTCTAAACCTCGTGATGCTCATAACAAC GCAGGCCAATTATCATCTCGGCCCTTGGGCGTATCGATGGACTCGAGAGG TGGGACAAGGACAACGAGGGCCGAGACTTCGAGTTCTCCGCCCTCCGATC GACCATCTTCGTCTTCGGCCTTATTGCCGCCGTGCTCATTGTAGCGTGGC ACTTCGCACGGGCGTGGCTGGTGAGAGAAACACACCGATATTTTTTGCCG GACAAGCGGACATGTGTTGTACCCCAGCAACAATCGCATCGAAGCTTGCA CGATATGTCAACCCGACCGACTCGTTACGTCTAAGCGCCCAACGTTTCCC CTCGCTTCCTCCCCCGTGGTTCTTGTTTACTTATTTTTTTCGGAAGACTC TTCCCGGCATGCAGCTGGTGTCGGGAGGCGTTAAGGTCGAGCCGCCTAAG GAAGACCTTCACGGCATCTACGCCTCCAGCCGCATCGTCATCATCGCGTG GTGCATCCTCTTCACTTCGTTCATCATCTCCGAGGACGACGGCTTCGATT ACAGAGGCGCGCTACTCGCATGGGTGCGTACATGTGGCGGGAACTTTTGC TTTTCGGTTGGGTACAATCTTGTTGGTTAGATCATGCGTGTGGCTCGGTA TCGAGTTGGGTATGTTGGTGAGGCTTCGTATGTAGTACCTTGTTCAAGGT GCATTGCTGTAGAACCTCGTGTTGGGCTGGCGAAAAAAGGAGGCTCTCTC TTTGTTCTGGTGTACCTTCTATTTCCAATTAAGTACTAGTGGATGGCGGG CGATGTACAGGAGAAGGTTGTTCTAGTAGCAGCAGCAGTGTTGATTGGTG GACAGTGACCCACCCCCACGCTCTTACAAGCTCGAACCCCTCCTCCCTTT TCCCCGCCGCGCCGTGCGATCCGCAGATGCTGTCCCTGATTGCGGTATTC CCGCACCCCGTGAGTTACGCCTGGCTCGGTGTCAACACGGGTATCTTCTT GCAAGGGATCGGTGCCAACCGTCTCCGGTTCCTGGGGTGCAAGGAATGGT GAACGCGTGATAATCGTCTTACGACTGTTGTTCTTTTGTGTGCGGGGGAG ACAAAGAAGTGCATCGCGGAGCGGACTTAGTCGCCCGCGATGTCGTCTGA GGCTTCGCGATATCAGTGGCGTACTGTGAAATTTTCTGCTGGCTAGTGTG AGCTAGGGTCATGATGATGGTGTGGGGAAGGTTACGCTTGCGCAGCTGCT ACACTTTTCGTTTGGTCGAGAGTTTTTGGCTGAGGGATCATGGGGCCCAT AACAGGTTGGCGTTACACCGATACCCGCTCACACGACGAATTGTGTGAAC TGACAGTTTCGTTGTGAGTCGGTAGGGTTTCGGCGGTTTGTTTGGGCGCT ACCTTGTTGGATTATTCCAACTGTTCGGTGCCACATATTTTCTTTGATTT CGGTTCTTCGTTGAGGTACCCACTCCGAATCTTCACCGATATGGTCGGGT CCGATTTATTCATGATTTTCGCTTGATTGTCGTTTTTGTGTCTGTATTCG ATTTGACAGTGAACGGGCAGGCAGCGTGCGCTTCGTTGGACTTGGGTTGA GGGAGGTTGGGCCTCTGCGTTGTTTGTTCGTGAGAAAGCACCAAGCATCC ATGAACGAATCATGCCGTAGGGGCGTTGGCGGGTTTTACTGATACCACGC CACACATCATCGTGAGTGTGAGCCGATGGTCCGCTCCTCACGATGAGAAA CGCCTCCCAGGAAAAGAATAATATCTCACGCGTCGTAGCTACAATCAGTC CGAATTTCAGACCGCCGAGAGCGTCTCGGAGTTTATATGTTGATTTTGGC GGGGAGGATATTACAAAGAGGATCTGAGAGTACAGCAGTACCAACGTTGG TTGCGCGGGCTTGGGGGTGGGGTGAATGAAGTGAAAGTGTCTTGTTTCTG GGAACAATAATAGTAGTGTTGTGGTGTCTGTCCCAGAATTCAAGGAAGTT GAAGCGTGGTAAGATGTTAATTTGACTTCTTGGTGCTTGTATTTATAATT TCGTTCCGGGGAGGACCAGACGGGTTCTCTGCTCAATCAAGGTGCTGCCA TTTATTTGCAGGCGCGAAGACGTGACCGACAGCTAGCTGTAGATGTCACG GCCTCTTTCGACATCTTTCTCCGGTGTGATCAGTGTAGTCTGGCGTGTGG TACCATAGAACAACGGTTACGCTAGTACGCACGCGGTGGCGACGCAGCAT GGCACGGTATGCGGATGTGGCGGTTAGATGACCTGACTCTGGCGATTCGA GCCATCCTTTTGAAAAGGATGGCCATTTTATTACACGTGCATGCAAGTTA ATCTACTTGCATCGTTGCGTTCCCTGTCGGTGCCGCCTTCTTTCGTGCTG TTTTTCCGCTTTTGTTTCTTGAGAGGGAAATTCTTTCTTATCTGAAGGAG GTTGTAGGGGTCTTATCATGGATGTGGCGTTGCATCAAGGTGCTGCCATT TATTTG
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Coding sequence (CDS) from alignment at Scaffold_245:438592..443997+

>EsuBft124_3a-0001 ID=EsuBft124_3a-0001|Name=EsuBft124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=732bp|location=Sequence derived from alignment at Scaffold_245:438592..443997+ (Ectocarpus subulatus male Bft15b)
ATGGGGGGTTACGAAGGGCAGAACAAGCGCGCGCTCATCTGGGCTGCTTT
GTACTTCTTGGCATGGATTCTGCAAAGATTGTGGTGCCACCTGGGCCTGC
CCGACCACTGCGACCTCGCGATGCGGCCATTGGACGTGCTGACGGATTTG
GTGGTGCTCTTCACCTTCTCCCTCGCACAGGCATACTGGTGTGAGATCTT
GCTAGACGACCGTTTCGAGGAGCTCAAGAAGGCTCCTTGGATTTTCGGCG
TCATTCTCCTCACGCCAATTATCATCTCGGCCCTTGGGCGTATCGATGGA
CTCGAGAGGTGGGACAAGGACAACGAGGGCCGAGACTTCGAGTTCTCCGC
CCTCCGATCGACCATCTTCGTCTTCGGCCTTATTGCCGCCGTGCTCATTG
TAGCGTGGCACTTCGCACGGGCGTGGCTGACTCTTCCCGGCATGCAGCTG
GTGTCGGGAGGCGTTAAGGTCGAGCCGCCTAAGGAAGACCTTCACGGCAT
CTACGCCTCCAGCCGCATCGTCATCATCGCGTGGTGCATCCTCTTCACTT
CGTTCATCATCTCCGAGGACGACGGCTTCGATTACAGAGGCGCGCTACTC
GCATGGATGCTGTCCCTGATTGCGGTATTCCCGCACCCCGTGAGTTACGC
CTGGCTCGGTGTCAACACGGGTATCTTCTTGCAAGGGATCGGTGCCAACC
GTCTCCGGTTCCTGGGGTGCAAGGAATGGTGA
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