EsuBft124_38a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft124_38a-0001
Unique Name	EsuBft124_38a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:22113..24198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	160860.XP_007357160.1
ProteomeId	EsuBft124_38
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	4751\|Fungi
Length	191
Hectar predicted targeting category	other localisation
Evalue	8.41e-30
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi,3V3WY@5204\|Basidiomycota,22F53@155619\|Agaricomycetes,3H41B@355688\|Agaricomycetes incertae sedis
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft124_38a	EsuBft124_38a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 22113..24198 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_38a-0001-exon	EsuBft124_38a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 22113..22605 +
EsuBft124_38a-0001-exon	agat-exon-94988	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 22773..24198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_38a-0001-cds	EsuBft124_38a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 22113..22605 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_38a-0001-exon	agat-three_prime_utr-2370	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 23894..24198 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_38a-0001	EsuBft124_38	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 22113..23893 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:22113..24198+
coding sequence from alignment at Scaffold_245:22113..24198+

spliced messenger RNA

>EsuBft124_38a-0001 ID=EsuBft124_38a-0001|Name=EsuBft124_38a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_245:22113..24198+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATGCTGGAGGAGCAGGAAACGGACGGCATCAACGCTTTCCATGG
ATTGAGAGTAAAGCTGGTGGAAGTGAAGGAGAACGAGCCGCCAAAGCGCC
AAATCTCCCTTTCTACGGCAACGGAGTGGCTGAAGAAGATGGGATGCGAA
TACCACGACGGCAAAAAGGGGCTGTACTTCGATGGCCACGACGACAAGAA
GACCCTTGAATACCGGCACGACAAGTTCCTCCCGGCGCTGTTCGACACCC
GCGACTACATGGAGGTATGGATTCCGATGGGCAAGGATGAAGCGATCGTC
TGGGGTGTTGACGTCGAGACGGTGGAGGAGACCGAGCGCTTGCCGGATGG
TGGTGTCTGGGTTTGTGTCGATGATCTCGAGTCTGCGCTGGCAGACTTGC
TCGAAGACCTGCAAGCCAGAGTGCAGAGCAAGAAAACCTACTCTGACGGG
AGGCGGGCCATGCTTCTCTACCAGGATGAGAGCATATTTCGAGCCAACGA
CGACCAGAGGCGCGCGTGGTATCGGGACGGCCAGCATGTGCCCGTGAAGA
AGTCACAAGGCCAGGGGATCATGGTGTCGGGGACGATAATCCACAACGTT
GGCTTCTTCTCGGCGTCGCGGGCACAGATCCAGGACGCGGAGCGCAACCG
CAGGAAACGATGCGCCGCCTCAGCTGCCGCGAAGCGACGGGGGGAAAACG
TGAAGGTGGAGAAGTTCCGCCCCATCGACATGCTTCATGAAGACGAGCAT
GGACAGTACTGGTCCTACCACCTCTTCGAGTACGGCAAGAACAAGGAGGG
ATACTGGACCGGGCTCAGGATGCTGGACCACATGTCAGACGTGCTCGACA
TGTTCACAGTTCTCTACCCTGAGCACAAGCCTGTAGGCCTGTTCGACTGG
TCGTCCTGTCATGACTGCATGGAGGTCGGCGCACCGTCGGTGAAGAGAAT
GAACTTGGGTGTCGGTGGTGTGAGGAACGGAGAAGAGCTTGCGCCGATGG
ACCCCGTGACCATCCTCGAAGATACCCCGAACCTCCCAGCCGGCACGGTA
CAGCACTTGGTGTTTCGGAGGGGGGACGATCCCCCCTTCCACTCCCCGCA
TCTCAAGCCGGCGCAATATGTCGGAAAGTTGAAAGGAATGCGGCAGATTT
TGTGGGAGAGGGGGCTCCTGGTCAAAGGCATGAGTAAGACGGGGGGCTCG
GGCGAAAAGCAGGACCTCAGCAAGAGCATGGAGCACGTTTTGGGAGAGCA
GAAGGACTTCAAGGAAGTTGATTCTAGTCTGGTGCTGTTGATGCAGCGCC
ACGGGGGGGCCTGTCTCATGCTTCCTAAGTACCACTGCGAGTGTAACCCC
ATCGAGCTTGTTTGGGGCCGAGCGAAGGACTGGACTCGAAAGAACTGCAA
ATATTCGTTGAAATGCTTGCGCAAGAACGTGCCGCTGAGTTTTAGACCAG
AGGAGGATAGACAGGCTGTTTCGGTAGTCCAGGGCTACTGCAAGAAGGCG
TACACACACGCCCTCATGTACCGCGAGACGCGTGTGCAAGGGCCTGAGGG
CAAGAAGACGTACAAGAAGTACAAGTCGCACAGGCGCCCGACCCCGAAGG
AATGGAGGCCGTAGAGTCGATGGCGCATTCTTGTTCATTGAGCTGTATTT
GTTCAGTTTTTTTCCGTGTTTCTGGTGGGAATGTTGTACAAAAATGGAAC
ATTTTTGTTGAAAACGGCCAATTTTTGTGATGTGTGTACGCTGTAGGTGC
GGTAGAGGCATTTGCATAGTGTTTGAGGGCGTTCCTGTGCACGTGTGGGT
GGTTTGGTGCGAAAAAAAAAAAAGGATTAGCAACATATATGGGGGAAAAG
TTGCTCTATGGCCAATTTCGTGGGTTCGAGACCCGCCCCGAGCATCTTTT
TTTCTTTTTTTTCTCTTTT

protein sequence of EsuBft124_38a-0001

>EsuBft124_38 ID=EsuBft124_38|Name=EsuBft124_38a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=537bp
MPMLEEQETDGINAFHGLRVKLVEVKENEPPKRQISLSTATEWLKKMGCE
YHDGKKGLYFDGHDDKKTLEYRHDKFLPALFDTRDYMEVWIPMGKDEAIV
WGVDVETVEETERLPDGGVWVCVDDLESALADLLEDLQARVQSKKTYSDG
RRAMLLYQDESIFRANDDQRRAWYRDGQHVPVKKSQGQGIMVSGTIIHNV
GFFSASRAQIQDAERNRRKRCAASAAAKRRGENVKVEKFRPIDMLHEDEH
GQYWSYHLFEYGKNKEGYWTGLRMLDHMSDVLDMFTVLYPEHKPVGLFDW
SSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILEDTPNLPAGTV
QHLVFRRGDDPPFHSPHLKPAQYVGKLKGMRQILWERGLLVKGMSKTGGS
GEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLMLPKYHCECNP
IELVWGRAKDWTRKNCKYSLKCLRKNVPLSFRPEEDRQAVSVVQGYCKKA
YTHALMYRETRVQGPEGKKTYKKYKSHRRPTPKEWRP

mRNA from alignment at Scaffold_245:22113..24198+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft124_38a-0001 ID=EsuBft124_38a-0001|Name=EsuBft124_38a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2086bp|location=Sequence derived from alignment at Scaffold_245:22113..24198+ (Ectocarpus subulatus male Bft15b)
ATGCCGATGCTGGAGGAGCAGGAAACGGACGGCATCAACGCTTTCCATGG
ATTGAGAGTAAAGCTGGTGGAAGTGAAGGAGAACGAGCCGCCAAAGCGCC
AAATCTCCCTTTCTACGGCAACGGAGTGGCTGAAGAAGATGGGATGCGAA
TACCACGACGGCAAAAAGGGGCTGTACTTCGATGGCCACGACGACAAGAA
GACCCTTGAATACCGGCACGACAAGTTCCTCCCGGCGCTGTTCGACACCC
GCGACTACATGGAGGTATGGATTCCGATGGGCAAGGATGAAGCGATCGTC
TGGGGTGTTGACGTCGAGACGGTGGAGGAGACCGAGCGCTTGCCGGATGG
TGGTGTCTGGGTTTGTGTCGATGATCTCGAGTCTGCGCTGGCAGACTTGC
TCGAAGACCTGCAAGCCAGAGTGCAGAGCAAGAAAACCTACTCTGACGGG
AGGCGGGCCATGCTTCTCTACCAGGATGAGAGCATATTTCGAGGTTAGTT
TTAAACGGAGCAAAGCGGGTTTGATAATTCAGGTGTAAATTCCGGGCGCG
AACATTAATCTTGCTCGCAATTCAATTGTGGGACTTTGAATTTAATCACA
CATGTTGACAGCGCCACATCTCCCGCCCCTAAATTGTCGGTTTCTTGTTT
GTATTTGCAGCCAACGACGACCAGAGGCGCGCGTGGTATCGGGACGGCCA
GCATGTGCCCGTGAAGAAGTCACAAGGCCAGGGGATCATGGTGTCGGGGA
CGATAATCCACAACGTTGGCTTCTTCTCGGCGTCGCGGGCACAGATCCAG
GACGCGGAGCGCAACCGCAGGAAACGATGCGCCGCCTCAGCTGCCGCGAA
GCGACGGGGGGAAAACGTGAAGGTGGAGAAGTTCCGCCCCATCGACATGC
TTCATGAAGACGAGCATGGACAGTACTGGTCCTACCACCTCTTCGAGTAC
GGCAAGAACAAGGAGGGATACTGGACCGGGCTCAGGATGCTGGACCACAT
GTCAGACGTGCTCGACATGTTCACAGTTCTCTACCCTGAGCACAAGCCTG
TAGGCCTGTTCGACTGGTCGTCCTGTCATGACTGCATGGAGGTCGGCGCA
CCGTCGGTGAAGAGAATGAACTTGGGTGTCGGTGGTGTGAGGAACGGAGA
AGAGCTTGCGCCGATGGACCCCGTGACCATCCTCGAAGATACCCCGAACC
TCCCAGCCGGCACGGTACAGCACTTGGTGTTTCGGAGGGGGGACGATCCC
CCCTTCCACTCCCCGCATCTCAAGCCGGCGCAATATGTCGGAAAGTTGAA
AGGAATGCGGCAGATTTTGTGGGAGAGGGGGCTCCTGGTCAAAGGCATGA
GTAAGACGGGGGGCTCGGGCGAAAAGCAGGACCTCAGCAAGAGCATGGAG
CACGTTTTGGGAGAGCAGAAGGACTTCAAGGAAGTTGATTCTAGTCTGGT
GCTGTTGATGCAGCGCCACGGGGGGGCCTGTCTCATGCTTCCTAAGTACC
ACTGCGAGTGTAACCCCATCGAGCTTGTTTGGGGCCGAGCGAAGGACTGG
ACTCGAAAGAACTGCAAATATTCGTTGAAATGCTTGCGCAAGAACGTGCC
GCTGAGTTTTAGACCAGAGGAGGATAGACAGGCTGTTTCGGTAGTCCAGG
GCTACTGCAAGAAGGCGTACACACACGCCCTCATGTACCGCGAGACGCGT
GTGCAAGGGCCTGAGGGCAAGAAGACGTACAAGAAGTACAAGTCGCACAG
GCGCCCGACCCCGAAGGAATGGAGGCCGTAGAGTCGATGGCGCATTCTTG
TTCATTGAGCTGTATTTGTTCAGTTTTTTTCCGTGTTTCTGGTGGGAATG
TTGTACAAAAATGGAACATTTTTGTTGAAAACGGCCAATTTTTGTGATGT
GTGTACGCTGTAGGTGCGGTAGAGGCATTTGCATAGTGTTTGAGGGCGTT
CCTGTGCACGTGTGGGTGGTTTGGTGCGAAAAAAAAAAAAGGATTAGCAA
CATATATGGGGGAAAAGTTGCTCTATGGCCAATTTCGTGGGTTCGAGACC
CGCCCCGAGCATCTTTTTTTCTTTTTTTTCTCTTTT

Coding sequence (CDS) from alignment at Scaffold_245:22113..24198+

>EsuBft124_38a-0001 ID=EsuBft124_38a-0001|Name=EsuBft124_38a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1614bp|location=Sequence derived from alignment at Scaffold_245:22113..24198+ (Ectocarpus subulatus male Bft15b)
ATGCCGATGCTGGAGGAGCAGGAAACGGACGGCATCAACGCTTTCCATGG
ATTGAGAGTAAAGCTGGTGGAAGTGAAGGAGAACGAGCCGCCAAAGCGCC
AAATCTCCCTTTCTACGGCAACGGAGTGGCTGAAGAAGATGGGATGCGAA
TACCACGACGGCAAAAAGGGGCTGTACTTCGATGGCCACGACGACAAGAA
GACCCTTGAATACCGGCACGACAAGTTCCTCCCGGCGCTGTTCGACACCC
GCGACTACATGGAGGTATGGATTCCGATGGGCAAGGATGAAGCGATCGTC
TGGGGTGTTGACGTCGAGACGGTGGAGGAGACCGAGCGCTTGCCGGATGG
TGGTGTCTGGGTTTGTGTCGATGATCTCGAGTCTGCGCTGGCAGACTTGC
TCGAAGACCTGCAAGCCAGAGTGCAGAGCAAGAAAACCTACTCTGACGGG
AGGCGGGCCATGCTTCTCTACCAGGATGAGAGCATATTTCGAGCCAACGA
CGACCAGAGGCGCGCGTGGTATCGGGACGGCCAGCATGTGCCCGTGAAGA
AGTCACAAGGCCAGGGGATCATGGTGTCGGGGACGATAATCCACAACGTT
GGCTTCTTCTCGGCGTCGCGGGCACAGATCCAGGACGCGGAGCGCAACCG
CAGGAAACGATGCGCCGCCTCAGCTGCCGCGAAGCGACGGGGGGAAAACG
TGAAGGTGGAGAAGTTCCGCCCCATCGACATGCTTCATGAAGACGAGCAT
GGACAGTACTGGTCCTACCACCTCTTCGAGTACGGCAAGAACAAGGAGGG
ATACTGGACCGGGCTCAGGATGCTGGACCACATGTCAGACGTGCTCGACA
TGTTCACAGTTCTCTACCCTGAGCACAAGCCTGTAGGCCTGTTCGACTGG
TCGTCCTGTCATGACTGCATGGAGGTCGGCGCACCGTCGGTGAAGAGAAT
GAACTTGGGTGTCGGTGGTGTGAGGAACGGAGAAGAGCTTGCGCCGATGG
ACCCCGTGACCATCCTCGAAGATACCCCGAACCTCCCAGCCGGCACGGTA
CAGCACTTGGTGTTTCGGAGGGGGGACGATCCCCCCTTCCACTCCCCGCA
TCTCAAGCCGGCGCAATATGTCGGAAAGTTGAAAGGAATGCGGCAGATTT
TGTGGGAGAGGGGGCTCCTGGTCAAAGGCATGAGTAAGACGGGGGGCTCG
GGCGAAAAGCAGGACCTCAGCAAGAGCATGGAGCACGTTTTGGGAGAGCA
GAAGGACTTCAAGGAAGTTGATTCTAGTCTGGTGCTGTTGATGCAGCGCC
ACGGGGGGGCCTGTCTCATGCTTCCTAAGTACCACTGCGAGTGTAACCCC
ATCGAGCTTGTTTGGGGCCGAGCGAAGGACTGGACTCGAAAGAACTGCAA
ATATTCGTTGAAATGCTTGCGCAAGAACGTGCCGCTGAGTTTTAGACCAG
AGGAGGATAGACAGGCTGTTTCGGTAGTCCAGGGCTACTGCAAGAAGGCG
TACACACACGCCCTCATGTACCGCGAGACGCGTGTGCAAGGGCCTGAGGG
CAAGAAGACGTACAAGAAGTACAAGTCGCACAGGCGCCCGACCCCGAAGG
AATGGAGGCCGTAG