EsuBft124_37a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_37a-0001
Unique NameEsuBft124_37a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:24820..26194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft124_37
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length112
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37aEsuBft124_37aEctocarpus subulatus male Bft15bgeneScaffold_245 24820..26194 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37a-0001-exonEsuBft124_37a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 24820..25569 -
EsuBft124_37a-0001-exonagat-exon-94987Ectocarpus subulatus male Bft15bexonScaffold_245 25825..26194 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37a-0001-exonagat-three_prime_utr-2369Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 24820..25565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37a-0001-cdsEsuBft124_37a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 25566..25569 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37a-0001-exonagat-five_prime_utr-1575Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 26175..26194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_37a-0001EsuBft124_37Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 25566..26174 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_37a-0001 ID=EsuBft124_37a-0001|Name=EsuBft124_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1120bp|location=Sequence derived from alignment at Scaffold_245:24820..26194- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGGGCTGTCGTTCGACAAGATGTGGGTACTGGCCCTCAAGAGCGTGCGG
ACTGAGGGTTTGTTTGACAAGTCGCTGTTCTTCGAGGATCAGGATGGCAC
GTGGGCCGTGCATGTCGACGAATGCGCGAAGCTTTTGGCGACCATGTTCT
TCTACAAGGATGAAGCGGTATTTGGTACTGCTCATTTGACTCCAGCCCAG
CTGGTCGAAAGCGTTGACGGCGACGTCGAGGGCTACGTGGACGTGATCCG
CTACGCCATCCTCCAACTCCCCAAGAAGAAGACGACAGCCACCTGTCCAT
CTTTATTTTCCTTGCGCAAGCAGGCAGAACGAAGTAACGCCATCTTCCGG
TACTGGCAGAATGACCTGAGGTAGACCATGCCGGCGACAGAGTTTGCCGG
CAAAGGATGGAGCGTCGACCCACGAGAAAAGGGGAGCGACGGCGACGAAC
TCACAAAGGAGAACTGCGTGCTTGACCTGTCCGAGAATGCTTACATCGCC
CCTGACCGAAAGACAGTCACGCTTGCGTGTGGTTGCAACCCGGACATGGC
CCTGTGCAACAGGTGCAGTGCAACAACAAGCTCGTTCGCTTGCGACTGCA
GAAATCGTTGCACCCTACGGCGGGCGGCGCCGGCACCCGTGCGTGCAGGG
GGGAGGTCTGCGTCACGGCCTACGGTGGGTGCTTCTCAAACTAGGCGGGT
AGAGGGTACCTCCCGACCCCAACCACCCATCGAGAGTCGACCACGGCCAT
CCTACAGTGCTGCCAATGCCATGGCACTCTTTGCCGCCTCTATGAGGCAG
CAGGAATCGCATGGAGCGGAACAGAACGACGTGGAGGCGGGGACCCCCGA
GTAGCCTGCGAGCAAGGACGTTTCCGCCGGCGAGGCCGCGGAATCTAAGA
GCGCAGAGTTAAGAGGACCCCGAGTCGGACGAGAACGGCGACGGTTTGGT
CGGTGCACTCGACGATTTGATCAAGTTGGATTCGAGCGAATCTGACTCCA
GCCATGGGGAACCTGACGGGGTGAGCGAGAAGTGCGTCGACTTCAACTAG
AGTGACGGAGACACAGATGATGGTGTTGCGGATCTCGTAACCGACGCCTG
GAACTGAGATCTGGCTACTT
back to top

protein sequence of EsuBft124_37a-0001

>EsuBft124_37 ID=EsuBft124_37|Name=EsuBft124_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MWVLALKSVRTEGLFDKSLFFEDQDGTWAVHVDECAKLLATMFFYKDEAV
FGTAHLTPAQLVESVDGDVEGYVDVIRYAILQLPKKKTTATCPSLFSLRK
QAERSNAIFRYWQNDLR
back to top

mRNA from alignment at Scaffold_245:24820..26194-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_37a-0001 ID=EsuBft124_37a-0001|Name=EsuBft124_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1375bp|location=Sequence derived from alignment at Scaffold_245:24820..26194- (Ectocarpus subulatus male Bft15b)
CCGGGCTGTCGTTCGACAAGATGTGGGTACTGGCCCTCAAGAGCGTGCGG
ACTGAGGGTTTGTTTGACAAGTCGCTGTTCTTCGAGGATCAGGATGGCAC
GTGGGCCGTGCATGTCGACGAATGCGCGAAGCTTTTGGCGACCATGTTCT
TCTACAAGGATGAAGCGGTATTTGGTACTGCTCATTTGACTCCAGCCCAG
CTGGTCGAAAGCGTTGACGGCGACGTCGAGGGCTACGTGGACGTGATCCG
CTACGCCATCCTCCAACTCCCCAAGAAGAAGACGACAGCCACCTGTCCAT
CTTTATTTTCCTTGCGCAAGCAGGCAGAACGAAGTAACGCCATCTTCCGG
TACTGGCAGAATGACCTGAGGTAGACCATGCCGGCGACAGAGTTTGCCGG
CAAAGGATGGAGCGTCGACCCANTATTTGGTACTGCTCATTTGACTCCAG
CCCAGCTGGTCGAAAGCGTTGACGGCGACGTCGAGGGCTACGTGGACGTG
ATCCGCTACGCCATCCTCCAACTCCCCAAGAAGAAGACGACAGCCACCTG
TCCATCTTTATTTTCCTTGCGCAAGCAGGCAGAACGAAGTAACGCCATCT
TCCGGTACTGGCAGAATGACCTGAGGTAGACCATGCCGGCGACAGAGTTT
GCCGGCAAAGGATGGAGCGTCGACCCACGAGAAAAGGGGAGCGACGGCGA
CGAACTCACAAAGGAGAACTGCGTGCTTGACCTGTCCGAGAATGCTTACA
TCGCCCCTGACCGAAAGACAGTCACGCTTGCGTGTGGTTGCAACCCGGAC
ATGGCCCTGTGCAACAGGTGCAGTGCAACAACAAGCTCGTTCGCTTGCGA
CTGCAGAAATCGTTGCACCCTACGGCGGGCGGCGCCGGCACCCGTGCGTG
CAGGGGGGAGGTCTGCGTCACGGCCTACGGTGGGTGCTTCTCAAACTAGG
CGGGTAGAGGGTACCTCCCGACCCCAACCACCCATCGAGAGTCGACCACG
GCCATCCTACAGTGCTGCCAATGCCATGGCACTCTTTGCCGCCTCTATGA
GGCAGCAGGAATCGCATGGAGCGGAACAGAACGACGTGGAGGCGGGGACC
CCCGAGTAGCCTGCGAGCAAGGACGTTTCCGCCGGCGAGGCCGCGGAATC
TAAGAGCGCAGAGTTAAGAGGACCCCGAGTCGGACGAGAACGGCGACGGT
TTGGTCGGTGCACTCGACGATTTGATCAAGTTGGATTCGAGCGAATCTGA
CTCCAGCCATGGGGAACCTGACGGGGTGAGCGAGAAGTGCGTCGACTTCA
ACTAGAGTGACGGAGACACAGATGATGGTGTTGCGGATCTCGTAACCGAC
GCCTGGAACTGAGATCTGGCTACTT
back to top

Coding sequence (CDS) from alignment at Scaffold_245:24820..26194-

>EsuBft124_37a-0001 ID=EsuBft124_37a-0001|Name=EsuBft124_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_245:24820..26194- (Ectocarpus subulatus male Bft15b)
ATGTGGGTACTGGCCCTCAAGAGCGTGCGGACTGAGGGTTTGTTTGACAA
GTCGCTGTTCTTCGAGGATCAGGATGGCACGTGGGCCGTGCATGTCGACG
AATGCGCGAAGCTTTTGGCGACCATGTTCTTCTACAAGGATGAAGCGGTA
TTTGGTACTGCTCATTTGACTCCAGCCCAGCTGGTCGAAAGCGTTGACGG
CGACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCAACTCC
CCAAGAAGAAGACGACAGCCACCTGTCCATCTTTATTTTCCTTGCGCAAG
CAGGCAGAACGAAGTAACGCCATCTTCCGGTACTGGCAGAATGACCTGAG
GTAG
back to top