EsuBft124_36a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_36a-0001
Unique NameEsuBft124_36a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:26196..26843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft124_36
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_36aEsuBft124_36aEctocarpus subulatus male Bft15bgeneScaffold_245 26196..26843 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_36a-0001-exonagat-exon-94986Ectocarpus subulatus male Bft15bexonScaffold_245 26196..26738 -
EsuBft124_36a-0001-exonEsuBft124_36a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 26838..26843 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_36a-0001-exonagat-three_prime_utr-2368Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 26196..26354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_36a-0001-cdsEsuBft124_36a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 26355..26738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_36a-0001EsuBft124_36Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 26355..26843 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_36a-0001 ID=EsuBft124_36a-0001|Name=EsuBft124_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_245:26196..26843- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGACCACCCTGGCACCGAGTGTAGCAAATGCCTATCATCCAGGTGG
TGTAGATGCGCGGGGCCTTGAGATGGGAGGGGTAGGTGCCACGGAGGCGC
TTTCCGGAACCGGACCACTCCTTCACTTTCGAAACGGAAACGACCCTGCC
CCTGGTGTCGAGCGGCAGCGAGGGCCAGACATCGGCGCGGCGGAGCTCTC
CGTGATACACTTGATCGTTTGGGCGAAGAAGTACTGGGGGCAACGCTTCG
ACAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGATCATCCTA
CTGGCGATGACCGCTGGTTGGCTTCGGCCTCGTGGCGAGGGGGCGGTAGA
CGTGACCGTCCACGTGAGTGGCGAGACCAAGTTCCTGTGAATGAACAGAG
TATTCGTCAGCATCTGCGAACTCCAGGACGGAAGCGAGTCCGCTTGGCCG
CTATTGACCTTCAGGGGCTGGATTCCCACGGACAACGACAAGGCCCGTCT
GTTCGTCCTATCGTTCCTGGAGTCGGACTGTGACTACCTCCCGGCAATT
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protein sequence of EsuBft124_36a-0001

>EsuBft124_36 ID=EsuBft124_36|Name=EsuBft124_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MGTTLAPSVANAYHPGGVDARGLEMGGVGATEALSGTGPLLHFRNGNDPA
PGVERQRGPDIGAAELSVIHLIVWAKKYWGQRFDKWIVSSVDTDLWMIIL
LAMTAGWLRPRGEGAVDVTVHVSGETKFL
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mRNA from alignment at Scaffold_245:26196..26843-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_36a-0001 ID=EsuBft124_36a-0001|Name=EsuBft124_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=648bp|location=Sequence derived from alignment at Scaffold_245:26196..26843- (Ectocarpus subulatus male Bft15b)
ATGGGGGTAGGAGACTTCCTGCCCCAGCGGTGCTATCTGTACGCCAACCA
ATAAGCAAGAAGCGAAGAAAGGCGTGCGGGCGTATGGAATGCGGATGAGT
TACAGACCACCCTGGCACCGAGTGTAGCAAATGCCTATCATCCAGGTGGT
GTAGATGCGCGGGGCCTTGAGATGGGAGGGGTAGGTGCCACGGAGGCGCT
TTCCGGAACCGGACCACTCCTTCACTTTCGAAACGGAAACGACCCTGCCC
CTGGTGTCGAGCGGCAGCGAGGGCCAGACATCGGCGCGGCGGAGCTCTCC
GTGATACACTTGATCGTTTGGGCGAAGAAGTACTGGGGGCAACGCTTCGA
CAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGATCATCCTAC
TGGCGATGACCGCTGGTTGGCTTCGGCCTCGTGGCGAGGGGGCGGTAGAC
GTGACCGTCCACGTGAGTGGCGAGACCAAGTTCCTGTGAATGAACAGAGT
ATTCGTCAGCATCTGCGAACTCCAGGACGGAAGCGAGTCCGCTTGGCCGC
TATTGACCTTCAGGGGCTGGATTCCCACGGACAACGACAAGGCCCGTCTG
TTCGTCCTATCGTTCCTGGAGTCGGACTGTGACTACCTCCCGGCAATT
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Coding sequence (CDS) from alignment at Scaffold_245:26196..26843-

>EsuBft124_36a-0001 ID=EsuBft124_36a-0001|Name=EsuBft124_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_245:26196..26843- (Ectocarpus subulatus male Bft15b)
ATGGGGACCACCCTGGCACCGAGTGTAGCAAATGCCTATCATCCAGGTGG
TGTAGATGCGCGGGGCCTTGAGATGGGAGGGGTAGGTGCCACGGAGGCGC
TTTCCGGAACCGGACCACTCCTTCACTTTCGAAACGGAAACGACCCTGCC
CCTGGTGTCGAGCGGCAGCGAGGGCCAGACATCGGCGCGGCGGAGCTCTC
CGTGATACACTTGATCGTTTGGGCGAAGAAGTACTGGGGGCAACGCTTCG
ACAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGATCATCCTA
CTGGCGATGACCGCTGGTTGGCTTCGGCCTCGTGGCGAGGGGGCGGTAGA
CGTGACCGTCCACGTGAGTGGCGAGACCAAGTTCCTGTGA
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