EsuBft124_29a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_29a-0001
Unique NameEsuBft124_29a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:93735..97382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIT7
ProteomeIdEsuBft124_29
Protein domainsPTHR31126
Protein domainsIPR029021
Protein domainsIPR004861
Ownerapollo_admin@sb-roscoff.fr
Noteprobable tyrosine-protein phosphatase dg1060 os:dictyostelium discoideum gn:dg1060 pe:3 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length871
Hectar predicted targeting categoryother localisation
Evalue7.76e-158
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-20_002960.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameOCA6
KEGG koko:K18046
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Cross References
External references for this mRNA
DatabaseAccession
GO0006950
GO0051716
EC3.1.3.41
GO0016791
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_29aEsuBft124_29aEctocarpus subulatus male Bft15bgeneScaffold_245 93735..97382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_29a-0001EsuBft124_29Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 93814..97382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_29a-0001-exonagat-exon-94953Ectocarpus subulatus male Bft15bexonScaffold_245 93735..93911 +
EsuBft124_29a-0001-exonEsuBft124_29a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 94923..95076 +
EsuBft124_29a-0001-exonagat-exon-94957Ectocarpus subulatus male Bft15bexonScaffold_245 95575..95745 +
EsuBft124_29a-0001-exonagat-exon-94956Ectocarpus subulatus male Bft15bexonScaffold_245 96087..96196 +
EsuBft124_29a-0001-exonagat-exon-94955Ectocarpus subulatus male Bft15bexonScaffold_245 96767..96826 +
EsuBft124_29a-0001-exonagat-exon-94954Ectocarpus subulatus male Bft15bexonScaffold_245 97184..97382 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_29a-0001-exonagat-five_prime_utr-1570Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 93735..93813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_29a-0001-cdsEsuBft124_29a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 93814..93911 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_29a-0001 ID=EsuBft124_29a-0001|Name=EsuBft124_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=871bp|location=Sequence derived from alignment at Scaffold_245:93735..97382+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACAACAGTGTTGGTGTTTCCTTTGCTGACGAAAACACAACAGACGGCAA
AAGTGCTGCAATTCTAATATCAAGACAAGATGGAAATTGTCCCGCCGCCT
TTTCGATTTGGGGCGGTCGAGGCCGACGTGTTCCGATCCGCGCAGCCGAC
CCTCAAGAATTATCGGTTCCTCTCCAGGTTGAAGCTTCGCACGGTGGTGT
CGATAGCGCCGGAGGGACCGATGGAAGACGAGGCCATGTTTTGCAGGGAA
CACTCGGCGCAACTAGTGCCGGTCCGCGCAGAGTTGTACCGTGAAGAGGC
GGTGACGGTGTCGTGTCAGCAGGTGGCGCAGGTTCTGTCCATTCTTGCCG
ACAAGGACAGGCTGCCGGCCCTGGTCCACTGCCCCGACGGTCGCGTCCTG
AGCGGGGCCGTGCTGTGGTGCCTGAGGCGGCTGCAGTGCTGGGACGATCG
GGCTTCCGCCGCGGAGTTCGCCCGGTTCTCCGGTGTCCTGCCCTCGAGAG
AGGTAGAAAAGTTCGTGGAGAGCTACGGGGAAGAGGTCACCATTCCGGCG
AACGTTCCCAGGTGGCTGTGGGGGGGGGACAGGGCGCACTGGCATCCGTG
CATTCGGATCCGGCACCAGCCGCCGCTGGAAGTGTTCGAGCCGGACCCTC
TCCCTTCCCAACAGACACTCAGGGGCGAGGTCTACACGAGGACGGATTAT
CTTCGAGTGCGGCGGGACTACATGAACATGTACGCAAAAAATAAGATCCC
CGAGGGGGCGGGGGGGCGGCGAGGGGGCGGGAGCGTTGGCGCCAGGGGAC
AGGGGACGGACTCCGCCTCGAGGTGCGTTGTCCATGCCCTGTCCGGTCGG
CGCGTGGAGAATAGCAATTGA
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protein sequence of EsuBft124_29a-0001

>EsuBft124_29 ID=EsuBft124_29|Name=EsuBft124_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=263bp
MEIVPPPFRFGAVEADVFRSAQPTLKNYRFLSRLKLRTVVSIAPEGPMED
EAMFCREHSAQLVPVRAELYREEAVTVSCQQVAQVLSILADKDRLPALVH
CPDGRVLSGAVLWCLRRLQCWDDRASAAEFARFSGVLPSREVEKFVESYG
EEVTIPANVPRWLWGGDRAHWHPCIRIRHQPPLEVFEPDPLPSQQTLRGE
VYTRTDYLRVRRDYMNMYAKNKIPEGAGGRRGGGSVGARGQGTDSASRCV
VHALSGRRVENSN
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mRNA from alignment at Scaffold_245:93735..97382+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_29a-0001 ID=EsuBft124_29a-0001|Name=EsuBft124_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3648bp|location=Sequence derived from alignment at Scaffold_245:93735..97382+ (Ectocarpus subulatus male Bft15b)
AACAACAGTGTTGGTGTTTCCTTTGCTGACGAAAACACAACAGACGGCAA
AAGTGCTGCAATTCTAATATCAAGACAAGATGGAAATTGTCCCGCCGCCT
TTTCGATTTGGGGCGGTCGAGGCCGACGTGTTCCGATCCGCGCAGCCGAC
CCTCAAGAATTATCGGTTCCTCTCCAGGTGAGATATGCCCTAATTTTGCA
TCTGATCGTTGTGTGTGCATCACTATCTGTTGTACGCCTTCTCTGCTGCT
GCTGTATCACACCGGCACAGCAGTAGAGGCGGCCCATGTACGTGTTTGTT
GTTGTGCAGCAGACTACGGCGTGGTTCTACATGCAGTCTGCAGATATTCC
CGTGCGCGTGCACATGTAGGCGCATCATGGGGTCTGTGACTTGTGATATT
TAGGACTACAGCAATCTACACCATCATACTGCATGAAATGCCTGTACGTA
TCCATATGCAGCACCGCTACTATTGGGCTGCACCCAAAGAGGAAGTGTAA
TTTTGTATTTTTGGAAACACAATCGCCATGATCCCTCGAACCCTTTGGGA
GGAGGGACATTGTGTTGCTTCTGTTTCTCTGTACGGCTGTGGCGCGCTAG
AACATGATGAGAACGCACAATTGAGCAGCGACGATGGCACTCTGTAGCGA
ACACGCGCTAATAGCTCCTGTTGTTCGTGCGTCATGAGTCATATCTCGGT
TCTATTCTCGTGTCCAATTCAACGAAGAACCAATCAGCTTGTTCGTTCGC
GCTGACTCCGTACACAGCTCGTTCACAAGCCCTCGTTGCCGACTAGAGCC
GTAGACTAGCCTATGGAAGCGCCGACAGACCAGCTCTCCGAAACATTCCT
TTACTCATGTAGAGAGTCGAACAGCGCAGAAGCTTTTGCCCCATGCGCGA
CTGCTGTTTTCCGTATCATGGTAACGTAACATGGTAAATAGCTTCTCGCT
TTCGGTGGCTCGTGTGCCGATCCGCCCCCCCACCATGGAAGGTTGGCACA
TGACACACGGAAGGAGTCTCGCCACGCTTGAAGAACCGGGCCATTGCTAC
AAAGAGGTAACACATCAGTGCAATACCCAAGTGGCAAGACAAAATTCCAA
ACAACTGCGGTGGATGTTTGCGCTATTCCCGACCACATCACGCGGGACCG
TTTCATCCACATCCTGCCCTCCCCCCCCCCTGGGATAGGTTGAAGCTTCG
CACGGTGGTGTCGATAGCGCCGGAGGGACCGATGGAAGACGAGGCCATGT
TTTGCAGGGAACACTCGGCGCAACTAGTGCCGGTCCGCGCAGAGTTGTAC
CGTGAAGAGGCGGTGACGGTGTCGTGTCAGCAGGTGGCGCAGGTATTGAC
TGATTGGCTGACAACAAGTGTGCGTATTCGCAATAAGGAAGGGGGGTGGG
GGTTTTGCCACGTGGTCACGTTGCTGTCGCTGTCGGTGATGCCGTGCAGT
GAACCAAACCGTGCGCTTTACGGCGTGCGTCAATGTTCCTTTCCCAGCTG
GAAGCCTGCATATCTAGGCGAAAATCCCCAGAACAAGCGTTAGCATTTGT
CGAATACAGTGAGCTTGTTTCATCATCCGAGAGCTTGTTTCATCATTCGT
GTCCTCCCCCAGTTTTTGATTATGGGGAGTTCCCGTACGCGTCGCCGTTG
TCTGAGATGTTTTGGTGTGTCCCCCGCGTGTTCGCACGTAAACGAGAAAC
CATCAGTTCTCGCTCCGGTAACGTAGGAGCAATGCTCCGTCCGTCCCCTC
AAGGACGCGCGGTCAGTGGTCTAACCGCTAAGACATGCAATTCATGAGTA
CGTCCCGTCCCCCCCCATCTCTCGAAAAACCTGTGCCAAGGTTCTGTCCA
TTCTTGCCGACAAGGACAGGCTGCCGGCCCTGGTCCACTGCCCCGACGGT
CGCGTCCTGAGCGGGGCCGTGCTGTGGTGCCTGAGGCGGCTGCAGTGCTG
GGACGATCGGGCTTCCGCCGCGGAGTTCGCCCGGTTCTCCGGTGTCCTGC
CCTCGAGAGAGGTGCGGTCAAGCTTGGCTTAGATTTGTTGTTGTTGTTGT
TGTTGTTGTTGGTGTTGGTGGTGGCGGTGATGATGGTGATGATGCGGTTG
TTGTCGTAGTTGGTGGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTCACGATCGAAGTAGTCAAGAGTGGTTCGTACATATCCC
GTGGTACGATATCCGCCTCATCGTGTTCTTGCCAGCCGTCGTCATTTCAT
CCGCACCAACCCCTCCCGTGGGGGCGAACAACAGATAGTCTAGGTGGACG
TTTACTTCGAGCGCTCCTCGTACCCTTGCCGGCCTCGGCTCGCACCTTCC
AGGTAGAAAAGTTCGTGGAGAGCTACGGGGAAGAGGTCACCATTCCGGCG
AACGTTCCCAGGTGGCTGTGGGGGGGGGACAGGGCGCACTGGCATCCGTG
CATTCGGATCCGGTGAGAGTGAGGCAGGAAGACGCCGCGAGGAACAACAG
ATAGTGATGCTGGCGCGGCAGCGTAGATCGTGGGTCGTATGAGAGAACGT
TCCCTGGAGGGGGAAACGGAACACGGTTTTGGTTGGGCTGCACCCCTATG
CTGCTGCTGCTGCTGCTGGTTTTTGGGACAGGCGCAAAACACCAGCTACC
AATGATGCATTTGTCGATACTGCCACGGGCAGTCCCCTTTTTTGTTGTTC
CCCACCACCGCCGTGTCGAAATGCTGCTTTTGTTGCGCCCGGCCATGAAG
TACACGTCCCGAGAGACCGGCGACAGAGCTTGCTTTATCGCGGTCGATTT
TAAAAAATCTGGTCCAAACACCGGAGGCGCATAACCTGTGATTGTAAGAA
CGCCTCCAAGCGAAAAGAACCAATTCGGACCAGACCTTTGGAGCACCCTA
TGCGTAGGGGGAACAACAATCTCTGGCTCTCCTTGGTGGCGTAACATCCG
ACCTACTTCTGGTTCTGCCTTCGCGCGGCATCCTCATGTGACCGTGTGGG
CATGGCGTCCGATTCTTTCATGGTCGGGTCAGGCACCAGCCGCCGCTGGA
AGTGTTCGAGCCGGACCCTCTCCCTTCCCAACAGACACTCAGGTGGGTGA
TTGTCGGCTCTGTGCAGAAAAAAAAAAACTGCAGGCCGGTCGGGGGTGGT
CGTTATGGTATGTGGCTCGATCATGGTGAGAAGGAAGACATGTAACCACC
TTCGTGTTCATAACTTTTGCTGGTGGCGTTGGAAGTATGCCGTCGCTTCC
GCTGCTATTGTTTCTTGCTGTTGATGGCCGGCGATCGTCTCTTACGACGT
CTCGTCTTAACATCCTTCCTTCGGGAGGCTCGGCGCGACGCGGCGGCTCC
GAAAGCCAAGCAGGTGGGAGGCCGTAGGCCACGACTTGAGTTGACGACAC
AACGACACCTCCTGGACTAACCTCAAGCGCGCACTTCACGAACAAGCAGG
GGCGAGGTCTACACGAGGACGGATTATCTTCGAGTGCGGCGGGACTACAT
GAACATGTACGCAAAAAATAAGATCCCCGAGGGGGCGGGGGGGCGGCGAG
GGGGCGGGAGCGTTGGCGCCAGGGGACAGGGGACGGACTCCGCCTCGAGG
TGCGTTGTCCATGCCCTGTCCGGTCGGCGCGTGGAGAATAGCAATTGA
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Coding sequence (CDS) from alignment at Scaffold_245:93735..97382+

>EsuBft124_29a-0001 ID=EsuBft124_29a-0001|Name=EsuBft124_29a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=792bp|location=Sequence derived from alignment at Scaffold_245:93735..97382+ (Ectocarpus subulatus male Bft15b)
ATGGAAATTGTCCCGCCGCCTTTTCGATTTGGGGCGGTCGAGGCCGACGT
GTTCCGATCCGCGCAGCCGACCCTCAAGAATTATCGGTTCCTCTCCAGGT
TGAAGCTTCGCACGGTGGTGTCGATAGCGCCGGAGGGACCGATGGAAGAC
GAGGCCATGTTTTGCAGGGAACACTCGGCGCAACTAGTGCCGGTCCGCGC
AGAGTTGTACCGTGAAGAGGCGGTGACGGTGTCGTGTCAGCAGGTGGCGC
AGGTTCTGTCCATTCTTGCCGACAAGGACAGGCTGCCGGCCCTGGTCCAC
TGCCCCGACGGTCGCGTCCTGAGCGGGGCCGTGCTGTGGTGCCTGAGGCG
GCTGCAGTGCTGGGACGATCGGGCTTCCGCCGCGGAGTTCGCCCGGTTCT
CCGGTGTCCTGCCCTCGAGAGAGGTAGAAAAGTTCGTGGAGAGCTACGGG
GAAGAGGTCACCATTCCGGCGAACGTTCCCAGGTGGCTGTGGGGGGGGGA
CAGGGCGCACTGGCATCCGTGCATTCGGATCCGGCACCAGCCGCCGCTGG
AAGTGTTCGAGCCGGACCCTCTCCCTTCCCAACAGACACTCAGGGGCGAG
GTCTACACGAGGACGGATTATCTTCGAGTGCGGCGGGACTACATGAACAT
GTACGCAAAAAATAAGATCCCCGAGGGGGCGGGGGGGCGGCGAGGGGGCG
GGAGCGTTGGCGCCAGGGGACAGGGGACGGACTCCGCCTCGAGGTGCGTT
GTCCATGCCCTGTCCGGTCGGCGCGTGGAGAATAGCAATTGA
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