EsuBft124_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_26a-0001
Unique NameEsuBft124_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:148324..151951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIT4
ProteomeIdEsuBft124_26
Protein domainsIPR025659
Protein domainsPTHR16517
Protein domainsIPR000007
Ownerapollo_admin@sb-roscoff.fr
Notetubby-related protein 1 os:mus musculus gn:tulp1 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1134
Hectar predicted targeting categoryother localisation
Evalue2.32e-146
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K19600
Descriptionphosphatidylinositol binding
COG categoryS
BRITEko00000
Cross References
External references for this mRNA
DatabaseAccession
GO0050766
GO0030991
GO0051015
GO0005546
GO0021953
GO0001843
GO0097500
GO0009952
GO0045202
GO0060348
GO0097546
GO0005829
GO0008020
GO0060041
GO0044259
GO0021914
GO0019899
GO0042733
GO1901621
GO0045494
GO0007605
GO0005730
GO0001750
GO0005930
GO0007602
GO0009725
GO0061548
GO0055085
GO0060434
GO0048702
GO0008277
GO0007420
GO0031076
GO0042462
GO0001917
GO0016358
GO0050908
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_26aEsuBft124_26aEctocarpus subulatus male Bft15bgeneScaffold_245 148324..151951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_26a-0001EsuBft124_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 148771..151951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_26a-0001-exonagat-exon-94933Ectocarpus subulatus male Bft15bexonScaffold_245 148324..148821 -
EsuBft124_26a-0001-exonagat-exon-94934Ectocarpus subulatus male Bft15bexonScaffold_245 149150..149293 -
EsuBft124_26a-0001-exonagat-exon-94932Ectocarpus subulatus male Bft15bexonScaffold_245 149879..150052 -
EsuBft124_26a-0001-exonagat-exon-94931Ectocarpus subulatus male Bft15bexonScaffold_245 151292..151477 -
EsuBft124_26a-0001-exonEsuBft124_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 151820..151951 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_26a-0001-exonagat-three_prime_utr-2359Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 148324..148770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_26a-0001-cdsEsuBft124_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 148771..148821 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_26a-0001 ID=EsuBft124_26a-0001|Name=EsuBft124_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1134bp|location=Sequence derived from alignment at Scaffold_245:148324..151951- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCAAGAAGCGCCCCAACAACGCCACATCCAACTACCTGGTATC
GATGAGAGCGGGGGATCTGGACAGAAACTCGACCAACTTCCTCGGGAAGC
TCCGGGCCAATTTCGTGGGCACAGAATTCCAGGTGTTCGACGATGGTTAC
AGCCCGAAAGAGCTCGGCGGAGGAGGGGGCTGGGGCAGCGGCAACTTCGG
CGGCGGCAGCGGTGGCTCTGGGAGCAGTGGTGCCAAGAACATGTCTCTTC
GGGAGGAACTGGGCTGCGTCATGTATGCCTCCAACGTACTCGGCTCTAGG
GGGCCGAGAAAAATGCAGGTGGCGATTCCTGCCGTGAACGAGGCGGGAGA
GGTGTGCAAGTGGTCCGGCCTGGAGGGGGGCCGGGGCAGCCAGGCTGCAG
GAGGAGGCTCCAAGGCCATCGAGAGGGTCAAGAACAGGGACTACGACGGG
TCGCTCTACATGGTCAACAAACCTCCCCGGTGGAACGACCAGGTGGGAGC
GTACGTGCTGAACTTCTACGGCAGGGTAACCATGGCGAGCGTGAAAAACT
TCCAGCTCGTTTCCACCGAAGATTTCGACCGCATCATTCTGCAGTTCGGC
AGGGTGGCTCGCGAGGAGTTCACCATGGACTTCCAGGCTTTCGCGATCAC
CCTCAGCTCCTTCGACTCCAAGATAGCGTGCGACTAGGCCAAATACGACA
GGGAAAAGCCTCGTTGCGACTGCAGCAGCAGCGGCAAAACGTCAACAATT
GGAGAAGTGGAGACTTATTTGACCTGGAAGCCCGCGGCGTCCCCTTCGTC
GTTGCCCTTCAGCCCTCGTCTCTTCTTTCTGTCCGCTTCAGCGACAATGG
GTTGTGGACCACAGAGAGATGGCAGAAGGTTGACCCATGACATCTACAAC
TCCTTTGGTACACTAATCAAGCAAACGTAGAGTAGCAGTAGCGCAGAACT
TGTGTTTATGGGGACACGCTGTAGAATAGAGGAGGAGTTTATGGCGACAC
GCTGTCGAAGAAGGGAGGAGCACTCATTCCTCCACAGCTTCGCTATGACA
CATGCATTGTGAGGTGGGTGATAGTTCATCGTTGTTCGCGGGTACGAGAT
TGCTTACATTGCACTTTTTATCACGCGCGCTACA
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protein sequence of EsuBft124_26a-0001

>EsuBft124_26 ID=EsuBft124_26|Name=EsuBft124_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MCSKKRPNNATSNYLVSMRAGDLDRNSTNFLGKLRANFVGTEFQVFDDGY
SPKELGGGGGWGSGNFGGGSGGSGSSGAKNMSLREELGCVMYASNVLGSR
GPRKMQVAIPAVNEAGEVCKWSGLEGGRGSQAAGGGSKAIERVKNRDYDG
SLYMVNKPPRWNDQVGAYVLNFYGRVTMASVKNFQLVSTEDFDRIILQFG
RVAREEFTMDFQAFAITLSSFDSKIACD
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mRNA from alignment at Scaffold_245:148324..151951-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_26a-0001 ID=EsuBft124_26a-0001|Name=EsuBft124_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3628bp|location=Sequence derived from alignment at Scaffold_245:148324..151951- (Ectocarpus subulatus male Bft15b)
ATGTGCTCCAAGAAGCGCCCCAACAACGCCACATCCAACTACCTGGTATC
GATGAGAGCGGGGGATCTGGACAGAAACTCGACCAACTTCCTCGGGAAGC
TCCGGGCCAATTTCGTGGGCACAGAATTCCAGGTGAATTTGTGGTCCCGT
GACGTGGGGACGAAACAGTGTTAAGGCCTCCGTCAATACAATGGCCGCAA
CGAACATAGTGTTGTAGTGTTGTGTGTAACAATGGAACATCGTGCTAGTT
CATATACAGGGGGTTGCCTCTGGTTGGTGATGATATTGGTTTTCCTGTCT
ACAATGGCTGTTTCTTGTTGCGCCGTGTGTGTGTCTTTGCATAGCCTGTG
CTGCTTGTCTTCCCCCAAAACTAAAAGTTGCTACTAAATGTCGTCCTGAA
AGTTGTCCCTTAAGGCGCTGCCAAAGGTGTCCCTAAAGTCGCTGCTGCCG
CGTTGCCTGTCGTTGGTCCTGCAGGTGTTCGACGATGGTTACAGCCCGAA
AGAGCTCGGCGGAGGAGGGGGCTGGGGCAGCGGCAACTTCGGCGGCGGCA
GCGGTGGCTCTGGGAGCAGTGGTGCCAAGAACATGTCTCTTCGGGAGGAA
CTGGGCTGCGTCATGTATGCCTCCAACGTACTCGGCTCTAGGGGGCCGAG
AAAAATGCAGGTAATACATAGATGCGTCTGTCGTTGTCGTCGCTGTTGTT
GTTGTTGTTGTTGTGTTCTTGATTGTTCGTTCTTGTTGTGTTGTTGCGTG
GTTATTAAGATACTCGCGAAAACATGTGGTGGTTCTTCAAAACTTTGCTC
CCTTTGCCCGAACCCCTTCAAGCGCGCGAACAAGGAAAAAGGTCCTTGCT
CTACCTCGTGCGTGTTGCACACCTACACCCACCCATACGTGTTGTGTACG
CCACAGCACGGCAGCATCGTTTTCCAATGAACTGTATATGGGGCGTGCAA
GCGAGGTTTGTTTGGTCAATCACTATTTGTGTCGGGCACACGCCCATATC
GACACACTTTCTTCCCCTCCAATGACGTCACGTCAATACACTATACTTTT
CCTGAAACGCGGAGAGTATGCGCATTGCTAGGAGCCTCAGCTATGTAGAT
TCATGTTGGGGCTTGTACACACAAAATGAATACCAATAACGTTTCACCGG
TACCTCGCAGCGTTGAATCTCTTAGTGGCTTGGAAAGCGGTTGACCTGCT
TGTTTTTCGCTTCGCATCCCCCAGTTGGTCCTTTCGACCCGCTTGGTCGT
TACCGCTCCCACCGAGAGAGAAGCGTGGCGGCTAGTAGCGGTGTCCTGCC
TCTTACGCTTTCCTGGTTCGTTCACTCCCTCTGGCAGAGGAGAGCTGGCG
GGTCGAACAAAGGAGACGCCTAATAGCTCGTTTTGCTAGATTTCCGTCAT
ATTTCTCCTGCTTGTTCTGTTCAAAAACGATTGATTCCAGGCGACGATTC
AAATCCTTGCCCGTGCGCTTCGCATTTTCTCCATTCCATCCTTTGTCTTT
CGTGTGTTTGTCTTTCTTCCCTTTAATAGGTCTTGATACTCCCAAATAAA
GTCAACATGCGTTGGTTGCTTTCTGGCCTTCGCTACACACCCCGTTCACT
TTGTTGGCCTTCTGCACGCGTTTCACCTGCCCATATATAAAAACGAAAAC
AGCAACCATTCCCCTCCGAACACATCCCCGACCAACGTTTTCATGTTTTT
TTATTCTCGTCGCCATCACGTGTCACAACTCATCCTTGCATCACATCGTT
TCTTCTTGCCCAGTATCTGTGTCCTCTTGTCGTTGCCGTGGGCATCATGA
CTCAGTCTTTCATCGCCTGTCCTCTTCTGGCTCAAACATCTATCTGTGTT
CTCTCCCCCTCCATCAACATCAACATATCTTTACCTCCGAACGCTAAAGG
TGGCGATTCCTGCCGTGAACGAGGCGGGAGAGGTGTGCAAGTGGTCCGGC
CTGGAGGGGGGCCGGGGCAGCCAGGCTGCAGGAGGAGGCTCCAAGGCCAT
CGAGAGGGTCAAGAACAGGGACTACGACGGGTCGCTCTACATGGTCAACA
AACCTCCCCGGTGGAACGACCAGGTGTGCTGTCGCTGTTTTTTCATCGCC
GGAAATCGTGGTCGTTTCGTTTTCTCCTGGCCCGGGGAGCCGTTCATTCT
GCGTGGTGGCTAACGAGCCTCTGGGCCGTAGCAATTAAGTAACGAATGTG
AACGTGTGTGTTTGTCGTTCGCATGCCAAGACCGAGCCTTTTTTGTTTGC
AAGAAACACGTCTGGCCGTCTCGTGGCCTCGGAGAACAACAGGAAAGAAA
GACAGGGACATCCAAGACACACACAAAAGGCGGTTTGTCCCCGCAACAGC
GCTCGATGGAGTTTCGTCAATCCTTTTTGTGTATCGACCAACTTGGCACG
CTTGGCAAAACAGTTATTCAGGAAGAAACCGAGAGGAGAGTACAAACAAC
GTGCCCGCAGCGCGCTCGGTCACGTTCGTCGTGCTAGAAGGAGTCGTTGC
TAGCACTCCTGTGCACTCGAGCTTGTTTCGATTGAAGATTGAGATTCTGT
TGTTCGGGCCCTTTCCGAAGGTCTCACCAAAACCACGAGAACACCTGCAT
TTGGATCTTTCTTAGACACCCCAGCCCTTGCCCATCCCATCGCAACTCGC
CCGCGCAGGTGGGAGCGTACGTGCTGAACTTCTACGGCAGGGTAACCATG
GCGAGCGTGAAAAACTTCCAGCTCGTTTCCACCGAAGATTTCGACCGCAT
CATTCTGCAGTTCGGCAGGGTGGCTCGCGAGGAGTTCACCATGGACTTCC
AGGTGAACAGCCCACCGTAGGGTCGTCAGATGAGATGAATATGAGACTCT
GACCCTGGACACGGACGGAGTACTTGGACCGTGTTTTTTGCCCCCCCCCG
GTATCCCTCCCCCGACGCACACGCCTCACGCCTCGGTAATAGGTAAAATC
GGACTGACCGAAAGTTTCAAGTCGTTACAGACTGGCTGTGGGCCACGTTT
CGTTTGTTTACTTGCGTATGTGCTCTCCGTTTGCGCCTCTCTCAATCCCA
ACGTCATGTCCCTGCCTCTGCCAACTGTTCGACTGCCTCTCGCTTTGGTC
CTCTTGTAGTACCCCGTTTCACCGTTCCAGGCTTTCGCGATCACCCTCAG
CTCCTTCGACTCCAAGATAGCGTGCGACTAGGCCAAATACGACAGGGAAA
AGCCTCGTTGCGACTGCAGCAGCAGCGGCAAAACGTCAACAATTGGAGAA
GTGGAGACTTATTTGACCTGGAAGCCCGCGGCGTCCCCTTCGTCGTTGCC
CTTCAGCCCTCGTCTCTTCTTTCTGTCCGCTTCAGCGACAATGGGTTGTG
GACCACAGAGAGATGGCAGAAGGTTGACCCATGACATCTACAACTCCTTT
GGTACACTAATCAAGCAAACGTAGAGTAGCAGTAGCGCAGAACTTGTGTT
TATGGGGACACGCTGTAGAATAGAGGAGGAGTTTATGGCGACACGCTGTC
GAAGAAGGGAGGAGCACTCATTCCTCCACAGCTTCGCTATGACACATGCA
TTGTGAGGTGGGTGATAGTTCATCGTTGTTCGCGGGTACGAGATTGCTTA
CATTGCACTTTTTATCACGCGCGCTACA
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Coding sequence (CDS) from alignment at Scaffold_245:148324..151951-

>EsuBft124_26a-0001 ID=EsuBft124_26a-0001|Name=EsuBft124_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_245:148324..151951- (Ectocarpus subulatus male Bft15b)
ATGTGCTCCAAGAAGCGCCCCAACAACGCCACATCCAACTACCTGGTATC
GATGAGAGCGGGGGATCTGGACAGAAACTCGACCAACTTCCTCGGGAAGC
TCCGGGCCAATTTCGTGGGCACAGAATTCCAGGTGTTCGACGATGGTTAC
AGCCCGAAAGAGCTCGGCGGAGGAGGGGGCTGGGGCAGCGGCAACTTCGG
CGGCGGCAGCGGTGGCTCTGGGAGCAGTGGTGCCAAGAACATGTCTCTTC
GGGAGGAACTGGGCTGCGTCATGTATGCCTCCAACGTACTCGGCTCTAGG
GGGCCGAGAAAAATGCAGGTGGCGATTCCTGCCGTGAACGAGGCGGGAGA
GGTGTGCAAGTGGTCCGGCCTGGAGGGGGGCCGGGGCAGCCAGGCTGCAG
GAGGAGGCTCCAAGGCCATCGAGAGGGTCAAGAACAGGGACTACGACGGG
TCGCTCTACATGGTCAACAAACCTCCCCGGTGGAACGACCAGGTGGGAGC
GTACGTGCTGAACTTCTACGGCAGGGTAACCATGGCGAGCGTGAAAAACT
TCCAGCTCGTTTCCACCGAAGATTTCGACCGCATCATTCTGCAGTTCGGC
AGGGTGGCTCGCGAGGAGTTCACCATGGACTTCCAGGCTTTCGCGATCAC
CCTCAGCTCCTTCGACTCCAAGATAGCGTGCGACTAG
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