EsuBft124_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_25a-0001
Unique NameEsuBft124_25a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:182253..182568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft124_25
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length31
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_25aEsuBft124_25aEctocarpus subulatus male Bft15bgeneScaffold_245 182253..182568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_25a-0001-exonEsuBft124_25a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 182253..182568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_25a-0001-cdsEsuBft124_25a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 182253..182462 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_25a-0001-exonagat-five_prime_utr-1568Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 182463..182568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_25a-0001EsuBft124_25Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 182253..182462 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_25a-0001 ID=EsuBft124_25a-0001|Name=EsuBft124_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=316bp|location=Sequence derived from alignment at Scaffold_245:182253..182568- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAGCAGGAGATCTCCGAAGCGTCGAAGGAGATTAAGGAGGCCC
AGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTGAGAGGCGACCCTG
AAAGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
AGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGG
GCCGCGAGGGGGATCAGGCGGGTTTCCGCAGGTACCTGAAGATGATCGAT
GTCGAAGGTGAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGG
CAAGGTCCTTCNNNNN
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protein sequence of EsuBft124_25a-0001

>EsuBft124_25 ID=EsuBft124_25|Name=EsuBft124_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MLKAARKKRSIARWRALETFFEGYVRQLEKKGREGDQAGFRRYLKMIDVE
GERSFTSQNIKDEDGKVLXX
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mRNA from alignment at Scaffold_245:182253..182568-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_25a-0001 ID=EsuBft124_25a-0001|Name=EsuBft124_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=316bp|location=Sequence derived from alignment at Scaffold_245:182253..182568- (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCAGGAGATCTCCGAAGCGTCGAAGGAGATTAAGGAGGCCC
AGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTGAGAGGCGACCCTG
AAAGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
AGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGG
GCCGCGAGGGGGATCAGGCGGGTTTCCGCAGGTACCTGAAGATGATCGAT
GTCGAAGGTGAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGG
CAAGGTCCTTCNNNNN
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Coding sequence (CDS) from alignment at Scaffold_245:182253..182568-

>EsuBft124_25a-0001 ID=EsuBft124_25a-0001|Name=EsuBft124_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_245:182253..182568- (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACT
GGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGGGCCGCG
AGGGGGATCAGGCGGGTTTCCGCAGGTACCTGAAGATGATCGATGTCGAA
GGTGAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGCAAGGT
CCTTCNNNNN
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