EsuBft124_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_24a-0001
Unique NameEsuBft124_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:183986..189262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2850.Phatr44297
ProteomeIdEsuBft124_24
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2836|Bacillariophyta
Length155
Hectar predicted targeting categorysignal peptide
Evalue2.08e-10
EggNOG OGs2EAQA@1|root,2SGXD@2759|Eukaryota,2XDB6@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003010.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionCP12 domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24aEsuBft124_24aEctocarpus subulatus male Bft15bgeneScaffold_245 183986..189262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24a-0001EsuBft124_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 184974..189167 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24a-0001-exonagat-exon-94929Ectocarpus subulatus male Bft15bexonScaffold_245 183986..185036 -
EsuBft124_24a-0001-exonagat-exon-94928Ectocarpus subulatus male Bft15bexonScaffold_245 186279..186392 -
EsuBft124_24a-0001-exonagat-exon-94930Ectocarpus subulatus male Bft15bexonScaffold_245 187297..187440 -
EsuBft124_24a-0001-exonEsuBft124_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 189018..189262 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24a-0001-exonagat-three_prime_utr-2358Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 183986..184973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24a-0001-cdsEsuBft124_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 184974..185036 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_24a-0001-exonagat-five_prime_utr-1567Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 189168..189262 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_24a-0001 ID=EsuBft124_24a-0001|Name=EsuBft124_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1554bp|location=Sequence derived from alignment at Scaffold_245:183986..189262- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTAGTCGTCATGAAGGGGATAGACACACACGTGGGCAACAACAATCCAT
CCCTCCTACCTCCTCCCTCTCCCTTTCCTCTCCCGGAGATCAAAGATGAT
GTTCTCAAGGGTTGTCGCTCTCGCTTGCCTGGCGCTTGGCGCGGATGCTT
TCTTCATGGGCACGCCGCTGCGGACATCCGCAGGCGTGGGCTCTAGCCGA
TCGGCCACGACGATGAAGGTCCCGACAGACCACCCCGAGATCGAGGTCGC
AGAGGCAGCTGCCCTGAAGGCAACGAAGGAGTTCGGCGCCACCTCCCCCG
AGGCACGTCTGGCGTGGGACACGTACGAGGAGGTGGCCGCCGCCGACAAC
ACGATCGCCACACGGGCCACCCTTGACGAGGACTGCGATGTGACAAACGA
GAAAGTGTGCGAGGAGTACCAGGAACAGATGAAGGAGTTGGAGGAGATTT
TGGCTGCGGGTCCCGGGGCGATGAACGTCAGCGTCGAGCAGCTCGTCAAG
CAGAACATGGTCCTCATCGAGGAGAACAGCCGCCTGAAGGCCAGCCTCAG
CACCTACAAGAAGTGAGGTTGTTGCGCGCGAGCGTGCTCAGGACCGTCTG
GGCTCGTTTCGAGAGGGAGAGAATAGACGCCAGCACGCAGTCCGTTTTCC
CTCGCGGGCGAACTGACAGAAGAAGTGGGGAGGGTCGTGATCGATATTTT
CGCGTTGTGGTCTTGTTTTTTTTGTTGTTGACTTTTTCCCTCTCTTGGCC
GTTGTTTTTTAGTTTTTCTCGGAAGAACAGCCGTGCTGCTGCACCGGTGC
GTTGCAGCAAACGAAGTAAATACTTTTGGGTATTGCTTTCCTTGGCTAGG
AAGAGCGTCCCGCGATTAGGTTGGGATACGGTGGCGTCGCATGGGGACCA
AGGGAAATGATTGGTCTCGGTTGTGGCGTGTTCCCGATCGTTTGGGGAGG
TTGGAAGCCATAGAGGGAGGAGTGCAACGTTTGAACGCCACTGGCAGCAT
TGCACCCGAGTGCTGCCCCTTTCACACGTCAGTGACCCCACAGGAACAGG
GAAAAATTCGCCTGTTTCGGAAAATCGTGCTCGAGACTGAATCGTGTCGA
TGCCTTGTTTCTGTTTCCGTTCGATTCCCTGGGGGGTTCGTGGTGTGCCA
CAGCAATCTGTAGGCGTCTCGTGAGCTAACCATAGAGTGATCGGTCATGT
CTGTGTTAAGCTGGCTGTCTCTCCTCCAGTTCGTTCTGTCTGGATTAGAC
AAGTAACAAGGTTGTGCTTGGGTGAACACATTGTGAGATTCCGAGGGCTG
TAATCGCAATCTCTGTCTGCTACACGATGCCATATGGGAGTTTGCGCAAA
CGACCCCTCTCAATTGATTTTTCTTCTTTTACCGCGTGTGCTCAAAGCTG
CAACATGGACGTATGTCTTTCTACCACCCCTGGTTGTCGGTGTTGTTCTT
GAAGTGCTCGCGCACAAGGCTGAACATGGAGCCTTGCGGGAATATACGTC
ACGTTTGGAACGCCCCGTCGCTACGACGCGCGTCTTGCTCGTCTGCTACA
CGAT
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protein sequence of EsuBft124_24a-0001

>EsuBft124_24 ID=EsuBft124_24|Name=EsuBft124_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MMFSRVVALACLALGADAFFMGTPLRTSAGVGSSRSATTMKVPTDHPEIE
VAEAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVT
NEKVCEEYQEQMKELEEILAAGPGAMNVSVEQLVKQNMVLIEENSRLKAS
LSTYKK
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mRNA from alignment at Scaffold_245:183986..189262-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_24a-0001 ID=EsuBft124_24a-0001|Name=EsuBft124_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5277bp|location=Sequence derived from alignment at Scaffold_245:183986..189262- (Ectocarpus subulatus male Bft15b)
GGTAGTCGTCATGAAGGGGATAGACACACACGTGGGCAACAACAATCCAT
CCCTCCTACCTCCTCCCTCTCCCTTTCCTCTCCCGGAGATCAAAGATGAT
GTTCTCAAGGGTTGTCGCTCTCGCTTGCCTGGCGCTTGGCGCGGATGCTT
TCTTCATGGGCACGCCGCTGCGGACATCCGCAGGCGTGGGCTCTAGCCGA
TCGGCCACGACGATGAAGGTCCCGACAGACCACCCCGAGATCGAGGTAAA
GCGAGGAGAGAGACACGGGTTCAGTCGTGGGCACCGAGCAGCATGCGACT
CAAAAGCTCGCCTGTTCGTGATGATTCATGAGGCAGTGTATTGGCTGTGC
AGAGGCAGACAAGTTTGTGTCGTCGTCTTCAAGCAGGCATAGTGGGGGTG
TGACACGTCGTGGGTGTACCCGTTCTAGGTTTTTTCTGTTTTGAGCACGC
ATGCAGCAGTAGCCGCACCTGTGGCGGCCACATCATCATGTATCATCATC
ATGTGTGTTTGTCCTGCGCTTCGGCAGAGATATCCGGGCCATCTCGATGC
GTTGTGTCTCCTCTGGCACCGCTGCTGTGGTTTGCTGAGCATTCGGAGTA
ACGGCCTTTCGTGTCTCGGGTGCCGCGGTGCATGCTGGAATGTTGCTACT
GCTGTGGCCTGGAGCGTGTCGCGCGCTGACTATCATGAGCGGCGTGGCAT
GTTGTTGTTGTTGTCGTTGTCTTCACATGATGGATATATTATGGGATGGC
TGCTGCGTGATTCATAATCGTTTTCCTGACGACGCCAGCAAGGGTCAGCG
AATGCCAAACAACCTTAGTGTTCATGGGTCACGAGTGCTGGCGCTCCCTC
GTACGTTCAGCCCTCTCCCTGGGCGGTCTACAGCAGCAGCACCTGCCGAT
GAGATAGGAACCATATTGTACCACCTTTTTTTGGTACCGGGTAGGAGGGT
GTTGCCACTGTTTACCTATTGAAGTCTCCACGTGAGATGTGCATCCACCT
GGTTGCTGTAGACTAAATAGACCAATCGCCGTGTTTGTGGTCCCCTGGAC
TGGCAGTATCGTGGCGTTGAACTCTTTTCTCGCCACTCGCCGCCGGCGTT
GAGGACGATTTTGTTGCCTCGTGCGGCTCGAGCTGCTTAGCTGCTTACGG
GCTCGATCGAGGAGGCTGTAAGCACGCCCTCCTTGTGGAACTTTCTTGGT
TGTCATGTTGCAGACAGGATGTACAGTAATACACAGCAATACGGTCGACT
GAAATTGCCCGTCGTCTGCGTCCGAAGGCTTCTGTCATCAACACGAAACG
AAGTCACGTTCAACGTAAAGTCCTCGTCATGGCAAATGACATGTTTCCGT
TCGTCGTTGTCCGCGAGGTTCTGTTGGGGGCGGCAGGATAGTCTCTTGAG
ATTTCTGGTTTGTGTGTACCTCCCAGGCTTTTCCGCTGTGCCCCGCGCCT
ATGTTGGCACCCGGAGCTATTTAGAAGGCAGCCGCCGAGGTGAAGTTACC
CCGCTGCTGCCCGTTTGTGTTGCCCGTCGATAAACAACTTCCACAGCAGC
AACAGATTTGACCCTCCCAATCTGGGCATACCCGACCTGTACCTTCTCAC
CGATTACTCAATGCTGCGGTTATGCACGGGCTACCCCCACCCCACCCCCC
ATGCACCAAGGTTGGTCTTATTGGTGTTGATTCTCGAGCACAACTTTCGC
CCCCCTCGCTTGATGACTCTGCTGTTGTTCACCCTGAAAAGTTGTCACAA
GCGTGAGCTTCAATGCTGCTGTAGATCATGAGACCCCTCCCCCCTTCCCC
CCCCCACTTTTTTTTTTCCCAGGTCGCAGAGGCAGCTGCCCTGAAGGCAA
CGAAGGAGTTCGGCGCCACCTCCCCCGAGGCACGTCTGGCGTGGGACACG
TACGAGGAGGTGGCCGCCGCCGACAACACGATCGCCACACGGGCCACCCT
TGACGAGGACTGCGATGTAAGTGCTGCTGGGACCCCACCTGCGCGAGCAG
TGAAGTGTTATGAGGAAGTACAACATGGAAGGGGGTACGCAGACCCTATC
CCAAACCCTCGCCGGAACCCAGTTCCCCCGATTGCACGCTTAATCCAACA
TGTTAACTTCGTCGGAAACCCCTGGCAAGGCTACTGGTGCTTGCTCGCTT
GCTTGTGGTCGGTCGGTCGGTCGGTCGGTCGGTCGGTCGTTTGGTCATTA
TTTTTTGTGAAGTAAACGGTTCTTCTCTACCCGCAGATCCATTGTCCGGA
CAAATAAGCCGTTTCTTTGTATTTTTTGTGGTTGTTGTCGCTTCTGTTGC
TGCGGTTTCCTGGTGGCGGTGGTTTTACCTGTGGTTGATGAAAAGGGTTG
GCGCTCCCCAAGGAGAGCGAATTGTTTCCCATCCTCTGGTCGACGCCTCC
AGCCGCATCGAGAAAGCCCTGAATGCACCCGTTGCCCTCGTCTGGCGATG
TTTTCGCAGCTTAAAAAAATAGATACGAACGTCCTCGTAGCCAACGATCA
GTCCCAGAAAACAGAAAATCACCAGCTGCGGACGTCTTCTTCCTTGGCCA
ACCTAGAGCATCACACACACGCGCACACAAGTTAAACCTCACTTCGGTGG
ACTTGTCAGTTTTGCCAACTACCATGGTCCAGCTTGTTGCATTGCGTGGC
CGATGCTAAACGAGGAAGGACATACACCCGCGTACACACACTCTTTGGAT
CTTGGGCCCCCTTCAGGTCACGCGCCCTTGAGGGGTCCTTGATTGTTCAA
ACCGACGTCTGTTGACTGGTGAGTCGGTTGGCGCGTTCGATGCTAACTAG
AAGAATATACACGTATTTGTTGCGCATTCGATGTTAACTAGTAGACACAC
ATTTATATGTATACGTCCAGGTGACAAACGAGAAAGTGTGCGAGGAGTAC
CAGGAACAGATGAAGGAGTTGGAGGAGATTTTGGCTGCGGGTCCCGGGGC
GATGAACGTCAGCGTCGAGCAGCTCGTCAAGCAGGTGTGGTGAACCTGTC
CACTCCGCGCGCCTCCTCTTGTTTCGTCCGTGTTGTTGTTTTGGGGCTTT
TGGATGGCGGTAGCACCCAGCAGGCATTGTTGTGTTTTCATGAACATTGC
CCACATCACCCAGCCCTTACTGGGAGAATCGGCATCCCCGAGCAAGAGTT
GCCACAATATTTCCGACACTGCCCCTTCTTGTTGGGGTCGCTGGCAGATA
GCTGTCTACTGAGTTGTCCCTGGTTAAATCGGGCGGCAAAGATGGTGCCG
CCTCCCAGTGCGCCTCCCCGTGGAGAGAAGTAGGCTACTGCTGTTGTGCC
GCACGCATTTTCGAGGATTTCGGCGCATTTTCGAGGGTTTTGGCACAGAC
GTACACCTCCGTGTGTTTCTTTGAGCGCGTGAACGACAACGTTAATGGTT
TCACCGTACCCGTGGAATGAGCTCGTGTGTTGACGAGACCGGGAGTAGCA
GGAGTTCGACCTGATTGGACTCTTGGTAGTCTAGAAAGAGCCTTGCAGCG
CGACGGATGGACCCCTCCGTAGCGGAAGTGTGTTTTGTGTGCACGAGATC
CCGGTTAAATTTTTCTTGGAGTCGTTGTTTCTTTGATTCCGACGGCGGGG
AGAACTTCACGAGATATGCGTATTGTACTGTACCCGCGTACCCACCCCCG
TACCCCCATGCATGCTGCGCACATAGCGAACGGCGGGTCGTTGTACAAGT
GTGTATCGCGTACGCTTGTTGTGTCTCGAGATAAATGGGTTGAGCAGCCG
CCAACGGGCAGAGCTTGATCGATTCGAGGTGTGGCGACCCAAGCCGCAAC
TGAGCGAGGGCCACCTGCTCATGAGCTGACGTGAAGGCCGAATATGGTGG
CACCTTGTATGTCTCGGGGATGATGTTGCCTAGATCCGAGTGGGTGTTTG
TGTTTTCTCAATTGGCATCGACCGCGCTAGCTGGCTCACCAATGAAAATA
CGTCAGTCTTAAAACTGGAAAGAAACACAAACACGATGCTTGTGTGTTGC
TGGCCGCACGTGCGAAACGTGCTGAAATATACTTTTTTTTTGTTTTTGAG
GAAACAGAGCTCATCTAAGGTTTTCCAAGAGTGAGAAAAACTACATGGTT
CTTTCCACGCGTTGGGGGGTACGTACGTACGGTTGGAATTACTGCCCACC
CCCCCCCGCGCCCGCCCGCCCTGACCCCCCCTCTCTCTCCACCTTCCCGA
CCCCCACCGTCGCATTCGTCCACCAGAACATGGTCCTCATCGAGGAGAAC
AGCCGCCTGAAGGCCAGCCTCAGCACCTACAAGAAGTGAGGTTGTTGCGC
GCGAGCGTGCTCAGGACCGTCTGGGCTCGTTTCGAGAGGGAGAGAATAGA
CGCCAGCACGCAGTCCGTTTTCCCTCGCGGGCGAACTGACAGAAGAAGTG
GGGAGGGTCGTGATCGATATTTTCGCGTTGTGGTCTTGTTTTTTTTGTTG
TTGACTTTTTCCCTCTCTTGGCCGTTGTTTTTTAGTTTTTCTCGGAAGAA
CAGCCGTGCTGCTGCACCGGTGCGTTGCAGCAAACGAAGTAAATACTTTT
GGGTATTGCTTTCCTTGGCTAGGAAGAGCGTCCCGCGATTAGGTTGGGAT
ACGGTGGCGTCGCATGGGGACCAAGGGAAATGATTGGTCTCGGTTGTGGC
GTGTTCCCGATCGTTTGGGGAGGTTGGAAGCCATAGAGGGAGGAGTGCAA
CGTTTGAACGCCACTGGCAGCATTGCACCCGAGTGCTGCCCCTTTCACAC
GTCAGTGACCCCACAGGAACAGGGAAAAATTCGCCTGTTTCGGAAAATCG
TGCTCGAGACTGAATCGTGTCGATGCCTTGTTTCTGTTTCCGTTCGATTC
CCTGGGGGGTTCGTGGTGTGCCACAGCAATCTGTAGGCGTCTCGTGAGCT
AACCATAGAGTGATCGGTCATGTCTGTGTTAAGCTGGCTGTCTCTCCTCC
AGTTCGTTCTGTCTGGATTAGACAAGTAACAAGGTTGTGCTTGGGTGAAC
ACATTGTGAGATTCCGAGGGCTGTAATCGCAATCTCTGTCTGCTACACGA
TGCCATATGGGAGTTTGCGCAAACGACCCCTCTCAATTGATTTTTCTTCT
TTTACCGCGTGTGCTCAAAGCTGCAACATGGACGTATGTCTTTCTACCAC
CCCTGGTTGTCGGTGTTGTTCTTGAAGTGCTCGCGCACAAGGCTGAACAT
GGAGCCTTGCGGGAATATACGTCACGTTTGGAACGCCCCGTCGCTACGAC
GCGCGTCTTGCTCGTCTGCTACACGAT
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Coding sequence (CDS) from alignment at Scaffold_245:183986..189262-

>EsuBft124_24a-0001 ID=EsuBft124_24a-0001|Name=EsuBft124_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_245:183986..189262- (Ectocarpus subulatus male Bft15b)
ATGATGTTCTCAAGGGTTGTCGCTCTCGCTTGCCTGGCGCTTGGCGCGGA
TGCTTTCTTCATGGGCACGCCGCTGCGGACATCCGCAGGCGTGGGCTCTA
GCCGATCGGCCACGACGATGAAGGTCCCGACAGACCACCCCGAGATCGAG
GTCGCAGAGGCAGCTGCCCTGAAGGCAACGAAGGAGTTCGGCGCCACCTC
CCCCGAGGCACGTCTGGCGTGGGACACGTACGAGGAGGTGGCCGCCGCCG
ACAACACGATCGCCACACGGGCCACCCTTGACGAGGACTGCGATGTGACA
AACGAGAAAGTGTGCGAGGAGTACCAGGAACAGATGAAGGAGTTGGAGGA
GATTTTGGCTGCGGGTCCCGGGGCGATGAACGTCAGCGTCGAGCAGCTCG
TCAAGCAGAACATGGTCCTCATCGAGGAGAACAGCCGCCTGAAGGCCAGC
CTCAGCACCTACAAGAAGTGA
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