EsuBft124_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft124_19a-0001
Unique Name	EsuBft124_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:243204..247110 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft124_19
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	158
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft124_19a	EsuBft124_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 243204..247110 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_19a-0001-exon	agat-exon-94901	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 243204..243209 +
EsuBft124_19a-0001-exon	EsuBft124_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 245536..247110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_19a-0001-cds	EsuBft124_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 243204..243209 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_19a-0001-exon	agat-three_prime_utr-2354	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 245920..247110 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_19a-0001	EsuBft124_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 243204..245919 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:243204..247110+
coding sequence from alignment at Scaffold_245:243204..247110+

spliced messenger RNA

>EsuBft124_19a-0001 ID=EsuBft124_19a-0001|Name=EsuBft124_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1581bp|location=Sequence derived from alignment at Scaffold_245:243204..247110+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGGGGAGGGGGAGCGGGGGCGGGGGTGCAGTGGGATGCTGGTAA
CGTGACGATTGAGTCTTCTCTAGTGCAACTGAAGGAGACCGGGCCCACCC
CGCAAGACCGCCGATTTCTCTACGTAGACTGCCTCAAGGAGGCAACAGCA
GCTGTAAGCTTGGGGGTAGAGACTGTGCCTCCCGAAGCCCTGCGGGCACT
AGTGCGGCAATTTAAGCAGGGAGTGCACCAGGCGTCGAGGATAGGATCGT
CCGCAGGATTGGCGGTGGCAAATCCAGCTGTCGTCCGCCTGCCGACGAGC
AGAGACACCGGCAAACGAAAAAGGGCGTCTCACGAGGGGGGTGCTGTGGT
TGGAGCGGCTAGACGGGCGTACAACCAAAGCTACAGTTAATTGCAGGGCC
CATGCGTGCAGTGAGTGACACGCATCGTAGAAGCCCCGGCGCTCGGCCCC
ACATGGTTAGTCTCGGGCCGTCGTCGGCGTTCGTGTTGGTGTGCGTGCTG
GCGTGGCGAATGGGAGTACACTATTTTCTTGGTTTCCGGTTGGGCTGGAG
ACTCGCAAGTAAATATTTGGGGTTATCATAGACCGGAAGGATGCCGGACG
TGGAGGTGTGGTGTTTCATGTGCGTGTGCCTGTGCTTGTTCCGATTGTAG
GATTAAACTTGCAATTTTAAACGACAGAGGGTGTCCTCAACTTGTGGGCA
CGCCGGCCGCACGCCGCAAGCGATTGACCAACACCACATGGCTGACGCTC
ATTTCCCGTAATAATAATATTTCGACCCGCCTGCTTTCAAGTTCTTCATG
CCAACTTGTTCATTGCATTGGCGAACACCCATCCGCTCATTTCCTTTACC
AAAGCCCCCCACCACCCCCGTACTTTACACAGTAGTGGCCTAAAAAAAAT
GTTGTCACATAAAAAAAGCGTTTCGATCTCACTACCCAGCTTTCATATGC
ATAACTGTCCGTACTGATCCAATACTTGACGCGGTCGATTCCCAAGGTCA
CAGGCTAACTTACCCTAAAAAGGTACACTCAAAAAAATGGACGCGAGGGG
TCCGCGAGCCAATTTATATCAACCACAGATGCTGCCGCTGTAGTCTGGAG
CCCTCTGCTGCTCCCTCTCTCTGTGCGCGTGTGTGTGATTTCGTCCTACT
TTTTTCGTGGTGAGACGTGTACTAGTCTACACTTTTCAGTGTGTGTAGAG
TACACTTGGTTCAGTGTGTTTTTGCGTACAACCTACAACACGACAGGAGG
GGGGTAAACACCGACACGCTGATAATGTGTCTCTCTACACGCTATGTGAG
GTAAGAACTGGAACTGGAAGTCAGCATCACGGGGCGGAGACAGAGAGAGG
TACATCCCCTGGTTCAACCTTGCATGTCTGCTGTGTGGGCTGTGTGTAGT
CTGCCCGGTTGGGGGCTGTGTGTTTCGTGCTGGTTTCGTGTAGTCTGTGG
AGCAGGTGTCTGTGTTTCACTGTGTTTCTGTGTGTCTTGGTTCGCTGCTT
GGTTCTGGGTTTGTGGTTGGTTGGTTCTTCTGGAGGCGTTTTCCATCCTG
CAGCATTTCGTTGCAGGACCATCCTGCAAAT

protein sequence of EsuBft124_19a-0001

>EsuBft124_19 ID=EsuBft124_19|Name=EsuBft124_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MHGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATA
AVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTS
RDTGKRKRASHEGGAVVGAARRAYNQSYS

mRNA from alignment at Scaffold_245:243204..247110+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft124_19a-0001 ID=EsuBft124_19a-0001|Name=EsuBft124_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3907bp|location=Sequence derived from alignment at Scaffold_245:243204..247110+ (Ectocarpus subulatus male Bft15b)
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GCGGGGGTGCAGTGGGATGCTGGTAACGTGACGATTGAGTCTTCTCTAGT
GCAACTGAAGGAGACCGGGCCCACCCCGCAAGACCGCCGATTTCTCTACG
TAGACTGCCTCAAGGAGGCAACAGCAGCTGTAAGCTTGGGGGTAGAGACT
GTGCCTCCCGAAGCCCTGCGGGCACTAGTGCGGCAATTTAAGCAGGGAGT
GCACCAGGCGTCGAGGATAGGATCGTCCGCAGGATTGGCGGTGGCAAATC
CAGCTGTCGTCCGCCTGCCGACGAGCAGAGACACCGGCAAACGAAAAAGG
GCGTCTCACGAGGGGGGTGCTGTGGTTGGAGCGGCTAGACGGGCGTACAA
CCAAAGCTACAGTTAATTGCAGGGCCCATGCGTGCAGTGAGTGACACGCA
TCGTAGAAGCCCCGGCGCTCGGCCCCACATGGTTAGTCTCGGGCCGTCGT
CGGCGTTCGTGTTGGTGTGCGTGCTGGCGTGGCGAATGGGAGTACACTAT
TTTCTTGGTTTCCGGTTGGGCTGGAGACTCGCAAGTAAATATTTGGGGTT
ATCATAGACCGGAAGGATGCCGGACGTGGAGGTGTGGTGTTTCATGTGCG
TGTGCCTGTGCTTGTTCCGATTGTAGGATTAAACTTGCAATTTTAAACGA
CAGAGGGTGTCCTCAACTTGTGGGCACGCCGGCCGCACGCCGCAAGCGAT
TGACCAACACCACATGGCTGACGCTCATTTCCCGTAATAATAATATTTCG
ACCCGCCTGCTTTCAAGTTCTTCATGCCAACTTGTTCATTGCATTGGCGA
ACACCCATCCGCTCATTTCCTTTACCAAAGCCCCCCACCACCCCCGTACT
TTACACAGTAGTGGCCTAAAAAAAATGTTGTCACATAAAAAAAGCGTTTC
GATCTCACTACCCAGCTTTCATATGCATAACTGTCCGTACTGATCCAATA
CTTGACGCGGTCGATTCCCAAGGTCACAGGCTAACTTACCCTAAAAAGGT
ACACTCAAAAAAATGGACGCGAGGGGTCCGCGAGCCAATTTATATCAACC
ACAGATGCTGCCGCTGTAGTCTGGAGCCCTCTGCTGCTCCCTCTCTCTGT
GCGCGTGTGTGTGATTTCGTCCTACTTTTTTCGTGGTGAGACGTGTACTA
GTCTACACTTTTCAGTGTGTGTAGAGTACACTTGGTTCAGTGTGTTTTTG
CGTACAACCTACAACACGACAGGAGGGGGGTAAACACCGACACGCTGATA
ATGTGTCTCTCTACACGCTATGTGAGGTAAGAACTGGAACTGGAAGTCAG
CATCACGGGGCGGAGACAGAGAGAGGTACATCCCCTGGTTCAACCTTGCA
TGTCTGCTGTGTGGGCTGTGTGTAGTCTGCCCGGTTGGGGGCTGTGTGTT
TCGTGCTGGTTTCGTGTAGTCTGTGGAGCAGGTGTCTGTGTTTCACTGTG
TTTCTGTGTGTCTTGGTTCGCTGCTTGGTTCTGGGTTTGTGGTTGGTTGG
TTCTTCTGGAGGCGTTTTCCATCCTGCAGCATTTCGTTGCAGGACCATCC
TGCAAAT

Coding sequence (CDS) from alignment at Scaffold_245:243204..247110+

>EsuBft124_19a-0001 ID=EsuBft124_19a-0001|Name=EsuBft124_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_245:243204..247110+ (Ectocarpus subulatus male Bft15b)
ATGCACGGGGGAGGGGGAGCGGGGGCGGGGGTGCAGTGGGATGCTGGTAA
CGTGACGATTGAGTCTTCTCTAGTGCAACTGAAGGAGACCGGGCCCACCC
CGCAAGACCGCCGATTTCTCTACGTAGACTGCCTCAAGGAGGCAACAGCA
GCTGTAAGCTTGGGGGTAGAGACTGTGCCTCCCGAAGCCCTGCGGGCACT
AGTGCGGCAATTTAAGCAGGGAGTGCACCAGGCGTCGAGGATAGGATCGT
CCGCAGGATTGGCGGTGGCAAATCCAGCTGTCGTCCGCCTGCCGACGAGC
AGAGACACCGGCAAACGAAAAAGGGCGTCTCACGAGGGGGGTGCTGTGGT
TGGAGCGGCTAGACGGGCGTACAACCAAAGCTACAGTTAA