EsuBft124_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft124_15a-0001
Unique NameEsuBft124_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:300392..304214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDG4
ProteomeIdEsuBft124_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length210
Hectar predicted targeting categoryother localisation
Evalue4.21e-21
EggNOG OGsCOG2930@1|root,KOG1843@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20523
Descriptionregulation of ruffle assembly
COG categoryO
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15aEsuBft124_15aEctocarpus subulatus male Bft15bgeneScaffold_245 300392..304214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15a-0001EsuBft124_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 301680..304170 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15a-0001-exonEsuBft124_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 300392..301760 -
EsuBft124_15a-0001-exonagat-exon-94872Ectocarpus subulatus male Bft15bexonScaffold_245 302666..302716 -
EsuBft124_15a-0001-exonagat-exon-94874Ectocarpus subulatus male Bft15bexonScaffold_245 302851..303099 -
EsuBft124_15a-0001-exonagat-exon-94871Ectocarpus subulatus male Bft15bexonScaffold_245 303427..303632 -
EsuBft124_15a-0001-exonagat-exon-94873Ectocarpus subulatus male Bft15bexonScaffold_245 303981..304214 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15a-0001-exonagat-three_prime_utr-2350Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 300392..301679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15a-0001-cdsEsuBft124_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 301680..301760 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft124_15a-0001-exonagat-five_prime_utr-1562Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 304171..304214 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft124_15a-0001 ID=EsuBft124_15a-0001|Name=EsuBft124_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2109bp|location=Sequence derived from alignment at Scaffold_245:300392..304214- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGCCTTATCCCTCCCGGCACTGCAGTGGCGGGAATCCGCGGGATGGGC
GGCGGCGGCGGCGGTGGCGGAGCGCAAGGCACAACGGACGCGCACTACGC
CCCCTTCCAGCCGGACGCGGAGAACCACCTGAGAAATTTCGCGGTAACGG
CGGACGAGCGTAGGCAGATGGAGGAGGACTACCGGCTGGCGCTGGCGATG
CAGAAGGGGGAAGCGGCGGCGGCCAACGGTACAGGGGGCAGGGGGGTCCC
AGTTGCGGCGCCAGTGCAGGCGCCCCCGGCTTCTTCCGCAGGATCATCCT
CGTTTTCGCGCATGCTGGGGAATGAACGAGACGGCAACAGCGGCGGGGCT
GGAGGGGGCGGTATCTGGAGAAGGTCGTCGGGAAGCAAGGGGGACAAGGA
CGATGAGTGGGAGCTGGAACGAAGAGCCCGCATCGAAAAGGTTTCTTGGA
GTCTACTTAAGCCTACACATTACGTTTACTTTTTACTGGTAAAGGCCCGA
ATGGCGGATGCCGAGGAGACCGCTACCGCCGACAACGAACTCGGCGAGAT
GGCTTCTTTCCTCAACGGAGGAAGCGGGGGGAGAGGAGTAGGTAATGGCG
GTGTTGAAGAAGCGGCACCGTGGGATCAGGAACTGGAAGCAGGCGGGGCG
TTGAAGGGGGGGCACAGACCGGTCTCTGACGGCGAGGAGGTGTACCCGAG
GGGACTCGTCGATGAAACTGTCGTCAAGGAGTCCCCTCCGGACGAAGACA
GCTCCGACGACGACGAGTACCGACGAGACATCGCGCAGTTTACGGCAAGA
CGGAAGGGCGGTGCCGTCTAGCCATCTAGACACGCTACAGCAGTACAGAG
TGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCTCAACAACGCCGGTTGA
GTAGCGGCCGATGGCCGTGTATACTAGCGCCGGCGAAATCCATGGGCACG
GACTGAATCACCAAGCCATTCCCTTTGAAAGCGCTGGTCGATTCGCCAGG
CACAAGCCGGCATTATTGAGCCCCCCCACACTGCTGTACGTTTATTGCCC
ATCACCACTCCTGCGGTGGGCACTACTTGCTGTTTGTCTGTGTGTACTCT
AGTCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCAAATCAC
CAAGCGCGAAGCGCCGTGAGGTATGGGGACGGGGGGGGCAACTGGGAGCG
CCCGGCTTGATGCAGAGTTGGCGGCCGTGCATGACAGCAGTCGAGCGTGT
AGACTACTTGTCGTGCTCTCCACGTTACATTGGGAGACTGGGTAGGTAGG
CCCGTGTTTCTGTCGTCGTATATGTTGACGAGGACTGTTTGATGTTGTCC
ATTGCATTGGTGTTGGCGCGGTTACGTCTGGCTGGCTGCCCCCACCTGCG
TGTGTTCCAGCATGATTGCACGGAACCCCCCTGTCGGCTTGGGTCTTGGC
TTGGTGTCTGTTGAGTAGAAGCAAAACCCTAGTCGGCAGCAGTGTCTCAT
TTTTGCAAAGTAGGGGTATAACGGAATTTGTGACCGGTCTGTACCTAAAA
AACGGAGCCACCCTACAGCAGTGGCTGCGTTGATTGAGAGGGAGGAGGTT
GATCCACGTTGTATATTGTTGCTGGTCATAATGATGTTGGTGCACAAGAA
TTGGCTGCGATTTGCTCGTTTGCCATGACGTGTCCGACATGTCGTCGATC
GTGAGTGCTCATTTCGGCCGATCGTACCCCAAAAAGGAAAGAGAAAAGTT
TGACGTCCGCCTCATTGGGAGCGTTTGGAACGGCCAGCAGGCGGTAAACT
CCACCGAAACACCGCCAAAAATTGTTGTTGACGGGTCAGCCAGCGTGAAA
AAGTTGGGTCGTGCAGGCTGACGTTTTGACGGTGACACTGCCATAATGAA
AGACCATTTAAAAAATCATCCTTTAGGGAGCGTTTGGAACGGCCAGGCAT
TATACTCCGCCATATTTGTAGACGGGGTCAGCGTGAATGAGGTCAATAGT
AGTAGTGCT
back to top

protein sequence of EsuBft124_15a-0001

>EsuBft124_15 ID=EsuBft124_15|Name=EsuBft124_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MGGGGGGGGAQGTTDAHYAPFQPDAENHLRNFAVTADERRQMEEDYRLAL
AMQKGEAAAANGTGGRGVPVAAPVQAPPASSAGSSSFSRMLGNERDGNSG
GAGGGGIWRRSSGSKGDKDDEWELERRARIEKVSWSLLKPTHYVYFLLVK
ARMADAEETATADNELGEMASFLNGGSGGRGVGNGGVEEAAPWDQELEAG
GALKGGHRPVSDGEEVYPRGLVDETVVKESPPDEDSSDDDEYRRDIAQFT
ARRKGGAV
back to top

mRNA from alignment at Scaffold_245:300392..304214-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft124_15a-0001 ID=EsuBft124_15a-0001|Name=EsuBft124_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3823bp|location=Sequence derived from alignment at Scaffold_245:300392..304214- (Ectocarpus subulatus male Bft15b)
GCCGCCTTATCCCTCCCGGCACTGCAGTGGCGGGAATCCGCGGGATGGGC
GGCGGCGGCGGCGGTGGCGGAGCGCAAGGCACAACGGACGCGCACTACGC
CCCCTTCCAGCCGGACGCGGAGAACCACCTGAGAAATTTCGCGGTAACGG
CGGACGAGCGTAGGCAGATGGAGGAGGACTACCGGCTGGCGCTGGCGATG
CAGAAGGGGGAAGCGGCGGCGGCCAACGGTACAGGTGATGGGAGACGTGG
GAGGGAGGGAGGGAGGGAGGGAGGTAGGGGGAGCGACGGGGATGACGAAA
ACATTACACACGACAGAAAGACTAACACCAGTGCGGCTCTACGTCTCCGT
GACGCTGGCAAGAGAATTGGGTCGGCTATCCATAAACCTACATGGCGAGG
GGCCAGGTGGGGGGCGGGGGCGGGTTAGGGGAAGCTGCAGGTGGGCTTTT
CTGTGTCATCTTCTGGCGTAGTTTGACCGCACACTCGTCTATAGCTGCAC
ATTCCCGTATGATGAACCCGCAGACAAGCGTTGATGAGGGCAGCGGGGTA
ACCTTAGTTCATGCTTTGTCGGACATTGGCAGGGGGCAGGGGGGTCCCAG
TTGCGGCGCCAGTGCAGGCGCCCCCGGCTTCTTCCGCAGGATCATCCTCG
TTTTCGCGCATGCTGGGGAATGAACGAGACGGCAACAGCGGCGGGGCTGG
AGGGGGCGGTATCTGGAGAAGGTCGTCGGGAAGCAAGGGGGACAAGGACG
ATGAGTGGGAGCTGGAACGAAGAGCCCGCATCGAAAAGGTACTAGCGACA
TGTAAGACCACCGCGACAGCAGTATACACTTTCGAGGCTGGCGTGTTTTC
ATTGGCCAGCCTGTGAGCGTGGTCGATGCTAACGATTGAGGACACACACA
CACGCAAATAAGCAATGCCCATCCCGGCAACGGTGTTGACGTCATCACGC
AGAGCCTTGCTGTTTTTCTAGGACTTACAAAGAGAGACTGCCTATTGGAG
ATAAAACCACAACAGTCGAAGCGGATACGTTGAAATCTTCCCAATGGATG
AGGGGATATACCTGCTGGATACCTTATTTTGAGTCTATTTAAGCCTTGAT
ATGTAGTTTTCGCAGGTTTCTTGGAGTCTACTTAAGCCTACACATTACGT
TTACTTTTTACTGGTAAAGGCCCGAATGGCGGATGCCGAGGAGACCGCTA
CCGCCGACAACGAACTCGGCGAGATGGCTTCTTTCCTCAACGGAGGAAGC
GGGGGGAGAGGAGTAGGTAATGGCGGTGTTGAAGAAGCGGCACCGTGGGA
TCAGGAACTGGAAGCAGGCGGGGCGTTGAAGGGGGGGCACAGACCGGTCT
CTGACGGCGAGGAGGTGCGTTACACTTTGTCCCAAGCCTGCATGATACCA
GTATTTTTGTTTTTTCTGCGTGTGTAGTGTTTGTATGTCCGTCGCCGTTT
TGCTATGTACTTCCTTAGCAGCCTTTTGCACCGGGAGAGGCATGTCAGGT
GTACCCGAGGGGACTCGTCGATGAAACTGTCGTCAAGGAGTCCCCTCCGG
TATATGCTGCCCGCGAGCTCGTATTTGGTCATCAGCCTTGGCGACGTTGG
GCCTTGTGACTCATTTGGTGCCTCTTATTCTTTGTTCTTAGGTGTGGTGC
CAAGTACACACCCAATCGGCTCCGCTTTCACTCATCTTGCTTGGATGTAC
TTTGTCGTTGGAAAGTCCACGAGTTTTTCACCTCCTTGGGACAAGCGGCG
ATCGCTGCGACGGTTTCGGTTGTCGCGCAACGCACGCGTTCAAGACCCTA
TGTGGTGCGCCATGACGCGGAAGTGGGATGGTGGTAGCGGTCCAATGAGC
TGTCGCCGTGTCGCCGTGTCACCGAAGGCTGCGTGCGCTCTTGGCTCGCT
TTCAAGAGTCAAGTCTACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCT
CCGCCCGTTTTCGTTGTTGTCCTCGTCGCCGTCTTGCGGCCTTTCATTTT
TACGTGCGTGCCGTGGCTCATGCCTTGCTGTTTCTGTCACAAAAATTGCT
TTCCATGCTTCTAGACAACAACCACTCACTGCCACATACTCCTGAGTACT
GTGAGCAGCGATAACCCCCCGCCCCCCTAGAACCCCTGTCCTCTCCCTTT
CTAAGACGCGTGGTCAATTGTCTAACCCCTAACGAGTACCCCTCCCGATA
GATAAGACTACGGAAGACATTTTTGAGCCAACTTTGGCAAAGGAGTAGGA
AGAAGCGACTGGCCATCGGTGATCGGTGCTGTGGGAGCAGTGCTCCGTCC
TCTCGAAGACGACGCGTGGTCAATGGTTTAACCGCTAAGGCATGCAAAAC
ATAAGAGCACGCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNAGGACGAAGACAGCTCCGACGACGACGAGTACCGACGAGACATCGCGC
AGTTTACGGCAAGACGGAAGGGCGGTGCCGTCTAGCCATCTAGACACGCT
ACAGCAGTACAGAGTGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCTCA
ACAACGCCGGTTGAGTAGCGGCCGATGGCCGTGTATACTAGCGCCGGCGA
AATCCATGGGCACGGACTGAATCACCAAGCCATTCCCTTTGAAAGCGCTG
GTCGATTCGCCAGGCACAAGCCGGCATTATTGAGCCCCCCCACACTGCTG
TACGTTTATTGCCCATCACCACTCCTGCGGTGGGCACTACTTGCTGTTTG
TCTGTGTGTACTCTAGTCGGGACGGAGCACGCCGGGTTCTCACCGGACCA
GGCTCTCAAATCACCAAGCGCGAAGCGCCGTGAGGTATGGGGACGGGGGG
GGCAACTGGGAGCGCCCGGCTTGATGCAGAGTTGGCGGCCGTGCATGACA
GCAGTCGAGCGTGTAGACTACTTGTCGTGCTCTCCACGTTACATTGGGAG
ACTGGGTAGGTAGGCCCGTGTTTCTGTCGTCGTATATGTTGACGAGGACT
GTTTGATGTTGTCCATTGCATTGGTGTTGGCGCGGTTACGTCTGGCTGGC
TGCCCCCACCTGCGTGTGTTCCAGCATGATTGCACGGAACCCCCCTGTCG
GCTTGGGTCTTGGCTTGGTGTCTGTTGAGTAGAAGCAAAACCCTAGTCGG
CAGCAGTGTCTCATTTTTGCAAAGTAGGGGTATAACGGAATTTGTGACCG
GTCTGTACCTAAAAAACGGAGCCACCCTACAGCAGTGGCTGCGTTGATTG
AGAGGGAGGAGGTTGATCCACGTTGTATATTGTTGCTGGTCATAATGATG
TTGGTGCACAAGAATTGGCTGCGATTTGCTCGTTTGCCATGACGTGTCCG
ACATGTCGTCGATCGTGAGTGCTCATTTCGGCCGATCGTACCCCAAAAAG
GAAAGAGAAAAGTTTGACGTCCGCCTCATTGGGAGCGTTTGGAACGGCCA
GCAGGCGGTAAACTCCACCGAAACACCGCCAAAAATTGTTGTTGACGGGT
CAGCCAGCGTGAAAAAGTTGGGTCGTGCAGGCTGACGTTTTGACGGTGAC
ACTGCCATAATGAAAGACCATTTAAAAAATCATCCTTTAGGGAGCGTTTG
GAACGGCCAGGCATTATACTCCGCCATATTTGTAGACGGGGTCAGCGTGA
ATGAGGTCAATAGTAGTAGTGCT
back to top

Coding sequence (CDS) from alignment at Scaffold_245:300392..304214-

>EsuBft124_15a-0001 ID=EsuBft124_15a-0001|Name=EsuBft124_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_245:300392..304214- (Ectocarpus subulatus male Bft15b)
ATGGGCGGCGGCGGCGGCGGTGGCGGAGCGCAAGGCACAACGGACGCGCA
CTACGCCCCCTTCCAGCCGGACGCGGAGAACCACCTGAGAAATTTCGCGG
TAACGGCGGACGAGCGTAGGCAGATGGAGGAGGACTACCGGCTGGCGCTG
GCGATGCAGAAGGGGGAAGCGGCGGCGGCCAACGGTACAGGGGGCAGGGG
GGTCCCAGTTGCGGCGCCAGTGCAGGCGCCCCCGGCTTCTTCCGCAGGAT
CATCCTCGTTTTCGCGCATGCTGGGGAATGAACGAGACGGCAACAGCGGC
GGGGCTGGAGGGGGCGGTATCTGGAGAAGGTCGTCGGGAAGCAAGGGGGA
CAAGGACGATGAGTGGGAGCTGGAACGAAGAGCCCGCATCGAAAAGGTTT
CTTGGAGTCTACTTAAGCCTACACATTACGTTTACTTTTTACTGGTAAAG
GCCCGAATGGCGGATGCCGAGGAGACCGCTACCGCCGACAACGAACTCGG
CGAGATGGCTTCTTTCCTCAACGGAGGAAGCGGGGGGAGAGGAGTAGGTA
ATGGCGGTGTTGAAGAAGCGGCACCGTGGGATCAGGAACTGGAAGCAGGC
GGGGCGTTGAAGGGGGGGCACAGACCGGTCTCTGACGGCGAGGAGGTGTA
CCCGAGGGGACTCGTCGATGAAACTGTCGTCAAGGAGTCCCCTCCGGACG
AAGACAGCTCCGACGACGACGAGTACCGACGAGACATCGCGCAGTTTACG
GCAAGACGGAAGGGCGGTGCCGTCTAG
back to top