EsuBft124_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft124_10a-0001
Unique Name	EsuBft124_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:363548..369743 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft124_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	177
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft124_10a	EsuBft124_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 363548..369743 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_10a-0001	EsuBft124_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 363548..364827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_10a-0001-exon	agat-exon-94842	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 363548..363650 +
EsuBft124_10a-0001-exon	EsuBft124_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 364247..365412 +
EsuBft124_10a-0001-exon	agat-exon-94843	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 369168..369611 +
EsuBft124_10a-0001-exon	agat-exon-94844	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 369682..369743 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_10a-0001-cds	EsuBft124_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 363548..363650 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft124_10a-0001-exon	agat-three_prime_utr-2342	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 364828..365412 +
EsuBft124_10a-0001-exon	agat-three_prime_utr-2343	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 369168..369611 +
EsuBft124_10a-0001-exon	agat-three_prime_utr-2344	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 369682..369743 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:363548..369743+
coding sequence from alignment at Scaffold_245:363548..369743+

spliced messenger RNA

>EsuBft124_10a-0001 ID=EsuBft124_10a-0001|Name=EsuBft124_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1775bp|location=Sequence derived from alignment at Scaffold_245:363548..369743+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCCGGAAGCCTCTCAAATGCGCGCCGCACCGCTTGCAGGTCCA
CCCCTTGAAGGATGTCGACAGACGCTTCGCGGTCTTGGGAGTGGCGGACC
CAGCCTCCCTCGGGAATGCTTGCTTTGCTTCCGACTTCTTTTTCGGGGGG
CGAACGCGCCCCCGGCGGGTCGGCTCGGTCTTGTCGCCGCCTTCCGCCTT
GTTGCCGCCGTTTGAGGCAACGGACGGCGACGGCGGCGGCGACGGTGATG
GGGGGGGTGACGCAGACAGTGATTTTGGAGGTCTGCCGCGCTTCTTGCCC
GCGGGCGGAGCTTCGGCCGCCGGAGAAGCGGCAGCAGCAGAAGCCTCCCT
CGGGGATGCTTTCTTTCCTTCCGCCTTCTTTTTTGGAAGGCGACCGCGCC
CCCGGCGGGGCGGCTCCGCCTTGTCGCCGCCTTTGACGGCAACGGACGGC
GACGGCGACGGCGGTGGCGGCGATGGCGATGTCGGAGGTGACACAGACTG
CGTTTTTCGCGGTCTGTTGCGCTTCTTTCCCGCCGGCGGAGCTTCGCCCG
ATGACGGCGGCGACGGCGACGGCGATCGATTCTTGCGCGGTCTGCCGTTT
TTCTTTCCGGGAGAAGCTGCTGCCACCGCGGGTTCGTCGTTGGACGACGT
TGACGCTGCCGCAGCCGCCTTCCCACCTGGTTGACTGGCGACGGCGGGGG
GGGTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCGAAGGGT
GTTCGGTATCTTATGCTTTCTTCCTTGCGTACGGATGACAGCTGTGTATG
ACTTAATATAGTTTCTGGTGCTTCACTTCCAGAGACAGTTGTAAGCCCTG
TGTAACTGCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAACACAACGTGGTGCGATCATCCCCCTTGCGCGGAGTGA
GGGTTCTCGAGCCCGCACAACATGATCTACTCGACCACCATTATGGTTAC
CGCCAAAAAAACCCCAGAGGTACGCTCCACCATGGGTTGCTACCCCACTT
ACGCTCCCGAGTACACGTATCTGCCGAAAGTTTGGCCAACAATTCCTTAC
TGCTTTGTAATCACCTCTCTCCAATCGAAAACAATGCATTGTGCGTGCCG
CACATCTAGCTCCGCAGTTTTTGCGTGGTTGGTCCGGTCGTTCAGCTTGC
TCGACGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGAGGTTTCAGTAT
GCAGCTATCCTCACTCAACACGTCTATGTGTCCGGCAATCTCCAATACAA
ATCAACCTGTGAGGTCTCAGTATGTGTCTATCCTCACTCAAAGCGTGTAT
GTGTCTGGCACTATCCAACATCACT

protein sequence of EsuBft124_10a-0001

>EsuBft124_10 ID=EsuBft124_10|Name=EsuBft124_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=227bp
MAPRKPLKCAPHRLQVHPLKDVDRRFAVLGVADPASLGNACFASDFFFGG
RTRPRRVGSVLSPPSALLPPFEATDGDGGGDGDGGGDADSDFGGLPRFLP
AGGASAAGEAAAAEASLGDAFFPSAFFFGRRPRPRRGGSALSPPLTATDG
DGDGGGGDGDVGGDTDCVFRGLLRFFPAGGASPDDGGDGDGDRFLRGLPF
FFPGEAAATAGSSLDDVDAAAAAFPPG

mRNA from alignment at Scaffold_245:363548..369743+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft124_10a-0001 ID=EsuBft124_10a-0001|Name=EsuBft124_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6196bp|location=Sequence derived from alignment at Scaffold_245:363548..369743+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCCCGGAAGCCTCTCAAATGCGCGCCGCACCGCTTGCAGGTCCA
CCCCTTGAAGGATGTCGACAGACGCTTCGCGGTCTTGGGAGTGGCGGACC
CAGGTCCGCTCTTCTGGCCTTTCTTCTTCTTGCCCTTGGCGACTTTCTTC
TCGCCTTCCGGCTCGGAGGAGGAAATTTTCTTCCGCTTCTTGGCGTTGGG
TTTCGCTCTCTTTTTGCCGTTGTCGTCGTCGTCGTCTTCTGTCAGCCCTT
CCTCTTCGTANTCTTCTTCTTCTGGTCTGCCGCCGGCCTTGCTGTCCCCG
AAATGCGCCCGCTTCCACCCCCCCGACCCCTCCCGGTGCCTCCTCCCCCA
AGCCCGCCACCACGCCCCCTACCCCGCCCTTTACCGACGGCTCTCGGCGA
ACCTTTCGAGCTCGCCGTGTCTGTCTCCGTCCCTTTCCTCCGGCCTCCCG
GGGAATCTTTCCCCTTACCCTCTTTCCCCGGCCCCACTGCTGCGGCTAGA
ACTGGAGGCTTTACCGTCCTGGTCGGGCGACCGCGCCTCGGCTTCGGCCG
CGTCCTGAAGTATTCCGTCTCCGTATCCCAGCCCTCCTCCTCATCTGACT
TCTGCGGCGCTTCCTTTTCCGCCTTCACCTTCTTCTCCCGCCGACCCTCT
TCGTTGCCCGCCTCCGCTTCATTCGGCGGAGCAGCGGTAGCAGCAGCAGC
CTCCCTCGGGAATGCTTGCTTTGCTTCCGACTTCTTTTTCGGGGGGCGAA
CGCGCCCCCGGCGGGTCGGCTCGGTCTTGTCGCCGCCTTCCGCCTTGTTG
CCGCCGTTTGAGGCAACGGACGGCGACGGCGGCGGCGACGGTGATGGGGG
GGGTGACGCAGACAGTGATTTTGGAGGTCTGCCGCGCTTCTTGCCCGCGG
GCGGAGCTTCGGCCGCCGGAGAAGCGGCAGCAGCAGAAGCCTCCCTCGGG
GATGCTTTCTTTCCTTCCGCCTTCTTTTTTGGAAGGCGACCGCGCCCCCG
GCGGGGCGGCTCCGCCTTGTCGCCGCCTTTGACGGCAACGGACGGCGACG
GCGACGGCGGTGGCGGCGATGGCGATGTCGGAGGTGACACAGACTGCGTT
TTTCGCGGTCTGTTGCGCTTCTTTCCCGCCGGCGGAGCTTCGCCCGATGA
CGGCGGCGACGGCGACGGCGATCGATTCTTGCGCGGTCTGCCGTTTTTCT
TTCCGGGAGAAGCTGCTGCCACCGCGGGTTCGTCGTTGGACGACGTTGAC
GCTGCCGCAGCCGCCTTCCCACCTGGTTGACTGGCGACGGCGGGGGGGGT
TGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCGAAGGGTGTTC
GGTATCTTATGCTTTCTTCCTTGCGTACGGATGACAGCTGTGTATGACTT
AATATAGTTTCTGGTGCTTCACTTCCAGAGACAGTTGTAAGCCCTGTGTA
ACTGCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACACAACGTGGTGCGATCATCCCCCTTGCGCGGAGTGAGGGT
TCTCGAGCCCGCACAACATGATCTACTCGACCACCATTATGGTTACCGCC
AAAAAAACCCCAGAGGTAAAAAAACCCGGTAACCTGGTTGCCGAGATCAC
GAAGTGAGTAGGCATGTTAACAACGTCGTTGCCAAGCGACGAAACCCAAT
CCCGATGGCAAACACCGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCCA
AGCGACGAAAACCCAACCCCGATGGCAAACACCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACCAACGTCCAGCTTCTCAGGTACGCTCCACCATGGGTTGCTACCCCACT
TACGCTCCCGAGTACACGTATCTGCCGAAAGTTTGGCCAACAATTCCTTA
CTGCTTTGTAATCACCTCTCTCCAATCGAAAACAATGCATTGTGCGTGCC
GCACATCTAGCTCCGCAGTTTTTGCGTGGTTGGTCCGGTCGTTCAGCTTG
CTCGACGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGAGGTTTCAGTA
TGCAGCTATCCTCACTCAACACGTCTATGTGTCCGGCAATCTCCAATACA
AATCAACCTGTGAGGTTTCATGCAGCTTTCTTCACTCAATGCGTCTATGT
GTCCGGAAATCGCAAACGCCACTCAATCCGTGAGGTCTCAGTATGTGTCT
ATCCTCACTCAAAGCGTGTATGTGTCTGGCACTATCCAACATCACT

Coding sequence (CDS) from alignment at Scaffold_245:363548..369743+

>EsuBft124_10a-0001 ID=EsuBft124_10a-0001|Name=EsuBft124_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=684bp|location=Sequence derived from alignment at Scaffold_245:363548..369743+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCCCGGAAGCCTCTCAAATGCGCGCCGCACCGCTTGCAGGTCCA
CCCCTTGAAGGATGTCGACAGACGCTTCGCGGTCTTGGGAGTGGCGGACC
CAGCCTCCCTCGGGAATGCTTGCTTTGCTTCCGACTTCTTTTTCGGGGGG
CGAACGCGCCCCCGGCGGGTCGGCTCGGTCTTGTCGCCGCCTTCCGCCTT
GTTGCCGCCGTTTGAGGCAACGGACGGCGACGGCGGCGGCGACGGTGATG
GGGGGGGTGACGCAGACAGTGATTTTGGAGGTCTGCCGCGCTTCTTGCCC
GCGGGCGGAGCTTCGGCCGCCGGAGAAGCGGCAGCAGCAGAAGCCTCCCT
CGGGGATGCTTTCTTTCCTTCCGCCTTCTTTTTTGGAAGGCGACCGCGCC
CCCGGCGGGGCGGCTCCGCCTTGTCGCCGCCTTTGACGGCAACGGACGGC
GACGGCGACGGCGGTGGCGGCGATGGCGATGTCGGAGGTGACACAGACTG
CGTTTTTCGCGGTCTGTTGCGCTTCTTTCCCGCCGGCGGAGCTTCGCCCG
ATGACGGCGGCGACGGCGACGGCGATCGATTCTTGCGCGGTCTGCCGTTT
TTCTTTCCGGGAGAAGCTGCTGCCACCGCGGGTTCGTCGTTGGACGACGT
TGACGCTGCCGCAGCCGCCTTCCCACCTGGTTGA