EsuBft123_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft123_9a-0001
Unique NameEsuBft123_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:307596..308380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft123_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft123_9aEsuBft123_9aEctocarpus subulatus male Bft15bgeneScaffold_38 307596..308380 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_9a-0001-exonEsuBft123_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 307596..308380 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_9a-0001-exonagat-three_prime_utr-2264Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 307596..308083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_9a-0001-cdsEsuBft123_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 308084..308380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_9a-0001EsuBft123_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 308084..308380 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft123_9a-0001 ID=EsuBft123_9a-0001|Name=EsuBft123_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=785bp|location=Sequence derived from alignment at Scaffold_38:307596..308380- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGA
CGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCA
CCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTCGCTT
AGTGTAGAGGACGATGAAGAGGTCTTTAGGGAAGAGGTAGAACTCGAGAT
GGAAGAGGTAACACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGT
GTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACAT
CTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCGCTCC
TATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGTACCT
TCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAGCGAA
GAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTGGGCG
ACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACATTCATT
GTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCATTTTTTG
TTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGTTCTCTT
TTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTACCGACC
GTTTCCTAGTGTCCCTCAGATCCCTCTAAGGGGTCGACTGGGTTTGTTTG
GTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT
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protein sequence of EsuBft123_9a-0001

>EsuBft123_9 ID=EsuBft123_9|Name=EsuBft123_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=98bp
MEVVKKMSLPESAKDLDARSMPRVLSDNLFVESTSGLTEQEVRSAVSTSL
SVEDDEEVFREEVELEMEEVTRRTCQEYTSKTTCPVKRKTRTVGKSRA
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mRNA from alignment at Scaffold_38:307596..308380-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft123_9a-0001 ID=EsuBft123_9a-0001|Name=EsuBft123_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=785bp|location=Sequence derived from alignment at Scaffold_38:307596..308380- (Ectocarpus subulatus male Bft15b)
ATGGAAGTGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGA
CGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCA
CCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTCGCTT
AGTGTAGAGGACGATGAAGAGGTCTTTAGGGAAGAGGTAGAACTCGAGAT
GGAAGAGGTAACACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGT
GTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACAT
CTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCGCTCC
TATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGTACCT
TCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAGCGAA
GAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTGGGCG
ACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACATTCATT
GTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCATTTTTTG
TTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGTTCTCTT
TTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTACCGACC
GTTTCCTAGTGTCCCTCAGATCCCTCTAAGGGGTCGACTGGGTTTGTTTG
GTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT
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Coding sequence (CDS) from alignment at Scaffold_38:307596..308380-

>EsuBft123_9a-0001 ID=EsuBft123_9a-0001|Name=EsuBft123_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=297bp|location=Sequence derived from alignment at Scaffold_38:307596..308380- (Ectocarpus subulatus male Bft15b)
ATGGAAGTGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGA
CGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCA
CCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTCGCTT
AGTGTAGAGGACGATGAAGAGGTCTTTAGGGAAGAGGTAGAACTCGAGAT
GGAAGAGGTAACACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGT
GTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGA
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