EsuBft123_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft123_25a-0001
Unique NameEsuBft123_25a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:449975..453457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft123_25
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length2160
Evalue1.02e-159
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft123_25aEsuBft123_25aEctocarpus subulatus male Bft15bgeneScaffold_38 449975..453457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_25a-0001-exonagat-exon-69314Ectocarpus subulatus male Bft15bexonScaffold_38 449975..450188 -
EsuBft123_25a-0001-exonagat-exon-69313Ectocarpus subulatus male Bft15bexonScaffold_38 451400..451617 -
EsuBft123_25a-0001-exonagat-exon-69312Ectocarpus subulatus male Bft15bexonScaffold_38 451666..452187 -
EsuBft123_25a-0001-exonEsuBft123_25a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 452252..453457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_25a-0001-cdsEsuBft123_25a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 449975..450188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_25a-0001EsuBft123_25Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 449975..453457 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft123_25a-0001 ID=EsuBft123_25a-0001|Name=EsuBft123_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2160bp|location=Sequence derived from alignment at Scaffold_38:449975..453457- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGA
GGGAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGA
CCGCGCAAGGGGGGGATACAGGGGTCGCAACTTTGCGAGGTGTGAACGGT
GGATTAGTCACTAGTGGGAAGGGAAAAAGGGAAGTTCTAGCAAGACACTT
CAAGAGACTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTA
AGAAGGAGGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCA
GACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGA
GGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGA
TAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATG
GTACTGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATG
GAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGACTGACC
CAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTC
TGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAG
CATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACC
ACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAG
CCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATG
GAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAA
TGTGGAGAGTGCTGAAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATG
CTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACA
AGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGT
TGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCAAGAGTAGGGGACACGGAA
ACGTCGGGGGGCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGT
GTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAA
AAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGAT
TTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGC
GGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGA
GTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGA
TGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCT
CGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGG
TAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCA
AACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAAT
CGTACCGCCGCTAGAGTACGCCGGAGAGATGAAAGCAGCGAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGCGCACAAGTAATGCAGTCGTGAGGGCAGAATTGGGGATCCAATC
CCTACGGTCGGAAAGAGACGCGAGGAAGCTGACATGGAAGTATCGCATGT
ACGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAACGAA
AAAACGATCGCGGTAATTGGGGATAGATGGTGGGCACAAGAGGCCGTAGA
GGACGGGGATAAGATGTGCAAGGAATTTTTATGTAGTTTGTGGCAGAAAC
GTAAAGAGCTCCCAAATGTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGT
GCTCCGTCTCGAAAGGGACGCGCGGTCAATGGTCAAATGACTATTGCAAG
CAACAAATGA
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protein sequence of EsuBft123_25a-0001

>EsuBft123_25 ID=EsuBft123_25|Name=EsuBft123_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=719bp
MIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXWDEVVQKANGGLEGNVKQMWEGISGMVKKTAQGGDTGVATLRGVNG
GLVTSGKGKREVLARHFKRLGVPSENEAFDQAFKKEVDAWAQKEEETSKA
DVGNVELEKEFTEDEVEACVNKLKCHKAAGADGIVNEFMKFGGKGMIQLM
VLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVF
CKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAGK
PTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVM
LDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAVRKGARVGDTE
TSGGPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADD
FVGMSDTPEGLQLQIDAAKKFTDKWRLSANVQKSAVMVCNENKEEPVEHR
WKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILA
NRHLDTRIKLTVLKSVIVPPLEYAGEMKAAKXXXXXXXXXXXXXXXXXXX
XXRTSNAVVRAELGIQSLRSERDARKLTWKYRMYGMGEERLPRIVWEANE
KTIAVIGDRWWAQEAVEDGDKMCKEFLCSLWQKRKELPNVGGVSSRGRNG
APSRKGRAVNGQMTIASNK
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mRNA from alignment at Scaffold_38:449975..453457-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft123_25a-0001 ID=EsuBft123_25a-0001|Name=EsuBft123_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3483bp|location=Sequence derived from alignment at Scaffold_38:449975..453457- (Ectocarpus subulatus male Bft15b)
ATGATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGA GGGAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGA CCGCGCAAGGGGGGGATACAGGGGTCGCAACTTTGCGAGGTGTGAACGGT GGATTAGTCACTAGTGGGAAGGGAAAAAGGGAAGTTCTAGCAAGACACTT CAAGAGACTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTA AGAAGGAGGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCA GACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGA GGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGA TAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATG GTACTGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATG GAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGACTGACC CAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTC TGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAG CATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACC ACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAG CCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATG GAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAA TGTGGAGAGTGCTGAAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATG CTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACA AGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGT TGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCAAGAGTAGGGGACACGGAA ACGTCGGTGTCAGGAATGCTGTCNGGTCATGCTAGACGGAGAACTGTCAA AATTCTTCGAGATTGAGCAGGGGGGCCCACAAGGTTGCACGCTGTCCCCA ACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGT CCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGC TGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAA CTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGC CAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAAC CAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGAC CAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGC ACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGC ACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTT TTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAGGTATGGGA AGGAAATAAGGAGGTAGTGAAAGAAGTCGAGGCGGCCTAGATGAAAGCAG CGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNGCGCACAAGTAATGCAGTCGTGAGGGCAGAATT GGGGATCCAATCCCTACGGTCGGAAAGAGACGCGAGGAAGCTGACATGGA AGTATCGCATGTACGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGG GAGGCGAAGTGAGACAGCAACATAGAGGGGTAGACAACCCACGGAATGGG TCAAGGTTGTAGAGGATGTATGGAAGGGGCTCGACCGACGAAGATGAAAC GCCGGAAACGGAGGGTCTACAGGGGTTCGAGGAGAAGATATCTGTTGCTT GTGCCGAGAGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGTGTGACATGGACAAGT TTGGTAAATTAGACAACAGCGAAAAAACGATCGCGGTAATTGGGGATAGA TGGTGGGCACAAGAGGCCGTAGAGGACGGGGATAAGATGTGCAAGGAATT TTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAATGTTGGTGGTG TCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCGAAAGGGACGCGCGGTC AATGGTCAAATGACTATTGCAAGCAACAAATGA
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Coding sequence (CDS) from alignment at Scaffold_38:449975..453457-

>EsuBft123_25a-0001 ID=EsuBft123_25a-0001|Name=EsuBft123_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2160bp|location=Sequence derived from alignment at Scaffold_38:449975..453457- (Ectocarpus subulatus male Bft15b)
ATGATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGA
GGGAAACGTCAAGCAGATGTGGGAAGGGATTAGTGGAATGGTAAAAAAGA
CCGCGCAAGGGGGGGATACAGGGGTCGCAACTTTGCGAGGTGTGAACGGT
GGATTAGTCACTAGTGGGAAGGGAAAAAGGGAAGTTCTAGCAAGACACTT
CAAGAGACTTGGAGTGCCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTA
AGAAGGAGGTGGACGCATGGGCCCAAAAAGAAGAAGAGACATCGAAGGCA
GACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGA
GGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGA
TAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATG
GTACTGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATG
GAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGACTGACC
CAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTC
TGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAG
CATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACC
ACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAG
CCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATG
GAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAA
TGTGGAGAGTGCTGAAGAAGATGACAGAGTGCACGAAAAGCGCGGTCATG
CTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACA
AGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGT
TGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCAAGAGTAGGGGACACGGAA
ACGTCGGGGGGCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGT
GTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAA
AAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGAT
TTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGC
GGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGA
GTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGA
TGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCT
CGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGG
TAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCA
AACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAAT
CGTACCGCCGCTAGAGTACGCCGGAGAGATGAAAGCAGCGAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGCGCACAAGTAATGCAGTCGTGAGGGCAGAATTGGGGATCCAATC
CCTACGGTCGGAAAGAGACGCGAGGAAGCTGACATGGAAGTATCGCATGT
ACGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAACGAA
AAAACGATCGCGGTAATTGGGGATAGATGGTGGGCACAAGAGGCCGTAGA
GGACGGGGATAAGATGTGCAAGGAATTTTTATGTAGTTTGTGGCAGAAAC
GTAAAGAGCTCCCAAATGTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGT
GCTCCGTCTCGAAAGGGACGCGCGGTCAATGGTCAAATGACTATTGCAAG
CAACAAATGA
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