EsuBft123_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft123_23a-0001
Unique Name	EsuBft123_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_38	contig	Scaffold_38:438121..440113 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft123_23
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	104
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a	EsuBft123_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_38 438121..440113 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a-0001-exon	agat-exon-69309	Ectocarpus subulatus male Bft15b	exon	Scaffold_38 438121..438227 +
EsuBft123_23a-0001-exon	EsuBft123_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_38 439179..440113 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a-0001-exon	agat-five_prime_utr-1499	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_38 438121..438185 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a-0001-cds	EsuBft123_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_38 438186..438227 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a-0001-exon	agat-three_prime_utr-2254	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_38 439533..440113 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_23a-0001	EsuBft123_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_38 438186..439532 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_38:438121..440113+
coding sequence from alignment at Scaffold_38:438121..440113+

spliced messenger RNA

>EsuBft123_23a-0001 ID=EsuBft123_23a-0001|Name=EsuBft123_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1042bp|location=Sequence derived from alignment at Scaffold_38:438121..440113+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTCGTCAGCGCGGTCACAAAGGCAGTGGAGGCGGAGAAGGCCCCGCCG
GCATGGGTCCTGAGCATGCTTATGCCGGGAGCCGCTCACCAGCAAGACAT
CCAGAAGCTCCGAAGTACTGCGGACGACAACAAGGACCGCATCACTGCCA
TTGAAAACTGTATTTCAGGGCAGGAAGCGTTCGTGTCCAGTGGTGGAGCA
TACGGCGCGCGACGCGGTGGGCGTGCTCAGCGGGGGACCGACAAACGTGA
CAAGGATAGTTCCAAATCCCGGGGTCCTCCCGCGCGGGCGAAGGCGAAAG
TATCGTTCGCTGGTACTGCCAAGCCCGACATCGCCAAACATAGGAAGGAA
TGTGACTTTATTGGTTGTCGTTTCAGTAACATACGCTTCACGCACACCCG
CGCGGAGTGCAAAAACGAACAAGCCGCTAAAAATGAGGGGTACACGGTTA
CGAAAAACTAGGGTCGCCCGAGTAGGTAGCATCCCTCGGCCAACGTGGGA
CACCAATCATTTGGTTCTGTCAAACCAGGAGGTACAAACCAGGATAGACT
GCAAAGCACGAGAAAGCAGAATAGAGCCAGAGTAGATGAGAGGGATTCAA
AACACTGTAACAATGGTATACAATCTCTGGTGGGAACAACAAGAAAAGCA
GTCAAAGAGCAGCGCTGTAGAAAGACAGTTGAAATACATGTATCACGAGA
ACATTCTCGCAAGGTTGTAGCAGCAAGCAAACGCGAGGAGTCCCGAAGTC
AAGTACCCGCACAACTGATGCAGTAGCCGCTGTAGATCCAGCACTAGGGG
ATAGCACCCAAGTAAGGCAAGTAGCCGCCTGTTTAGCGCCGCGAGCCTTG
CACGTAGCTACCGTAGCTGGGGACTTCAGGTCGAAACATAGGTCTAACCT
AATGAGAACTGACCGTAATGAAGAATTTCATGCTTTTTACATGTCTGCAC
TCGCTGGATATCCCGTGTGTCCATCGGTATTGCGATCGACATCCAAGCGA
GTGCGTGTACCAGCCAGAATAAACAATGAATCGGTTGATGAA

protein sequence of EsuBft123_23a-0001

>EsuBft123_23 ID=EsuBft123_23|Name=EsuBft123_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MLMPGAAHQQDIQKLRSTADDNKDRITAIENCISGQEAFVSSGGAYGARR
GGRAQRGTDKRDKDSSKSRGPPARAKAKVSFAGTAKPDIAKHRKECDFIG
CRFSNIRFTHTRAECKNEQAAKNEGYTVTKN

mRNA from alignment at Scaffold_38:438121..440113+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft123_23a-0001 ID=EsuBft123_23a-0001|Name=EsuBft123_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1993bp|location=Sequence derived from alignment at Scaffold_38:438121..440113+ (Ectocarpus subulatus male Bft15b)
TTCTCGTCAGCGCGGTCACAAAGGCAGTGGAGGCGGAGAAGGCCCCGCCG
GCATGGGTCCTGAGCATGCTTATGCCGGGAGCCGCTCACCAGCAAGACAT
CCAGAAGGTGAATCCGCGTTTGCTTGCCCCCGATCTTGAAGCAGAAAATC
GCTCTGGAATGCACACGACAGCAAGTGTTCAACAAACCCCTGCTAGAAAT
ATGTCTACACCGACAATTTCACCTAGTAACCCGGTACACCACAACACGGT
AAACCAGGCCTCACCGAACCAGGTTAACCAGCAAACGGTAAACCAGGACA
ACCCTGCCCCGGTAACTCAAAGCACGGTAAATCAGGACGTGATTAGCACG
GCGCGATTTACTTTGAAAGCTACTGACCTACCTCCTGATCTCAAGCTCGA
GGGTCTGCCATACGAAGATGTTCCCGAAAAAATGGCACTTTACAGGGCAC
ACATCGGTCTGTTGTCTGCAGACAACGTCTCTCAAAGCACAATCGATCAC
CGCGCAGTCAAACATCTCGCGCTCTTCGTGCGAGGTGCCGCAGCTCAAAG
TCTCAGCCTCATGCTTAGCTCATCTCTCGAATGGCGACCGCCAGCTCAGC
TAAATGCGTTGCGTGCACGTGGGGAAGTGGTCCGGATCACACCTCCGAAA
ACATGGAAGGAATGGGTCACGGCTTTCACCACATCGTTCGCTCCCGCCAA
CCGGATTGCTCTTCTTGCACGTGATGTCATGACATTAGAAGCGAAGACTA
GCGAATCAGTTGACGTGTTTGCGTTCAGAGTATCACGCGCGTTTGCCAGA
CTTCTAGGCGAAGCTGAACGCACAGCTCCGCTGAATGTACCACCTCATGA
ACACGCTTTTAACCAAGCTCTCACCGCATTTTTCGAAAATGGTGTACACC
CCTACATTCGCGTAGAGATGATGCGGACAGATCCATCCGATTCTTTCATG
GAGTCGACAGCGCGTGCTCGTAGACACGAGCCCAATAAACTGCGCTCGCC
CCCTGCCCCCATCTCGGCTACCGCCTCTACCGTTTACGGCTCTGCTGGCC
CCGGGCAGCTCCGAAGTACTGCGGACGACAACAAGGACCGCATCACTGCC
ATTGAAAACTGTATTTCAGGGCAGGAAGCGTTCGTGTCCAGTGGTGGAGC
ATACGGCGCGCGACGCGGTGGGCGTGCTCAGCGGGGGACCGACAAACGTG
ACAAGGATAGTTCCAAATCCCGGGGTCCTCCCGCGCGGGCGAAGGCGAAA
GTATCGTTCGCTGGTACTGCCAAGCCCGACATCGCCAAACATAGGAAGGA
ATGTGACTTTATTGGTTGTCGTTTCAGTAACATACGCTTCACGCACACCC
GCGCGGAGTGCAAAAACGAACAAGCCGCTAAAAATGAGGGGTACACGGTT
ACGAAAAACTAGGGTCGCCCGAGTAGGTAGCATCCCTCGGCCAACGTGGG
ACACCAATCATTTGGTTCTGTCAAACCAGGAGGTACAAACCAGGATAGAC
TGCAAAGCACGAGAAAGCAGAATAGAGCCAGAGTAGATGAGAGGGATTCA
AAACACTGTAACAATGGTATACAATCTCTGGTGGGAACAACAAGAAAAGC
AGTCAAAGAGCAGCGCTGTAGAAAGACAGTTGAAATACATGTATCACGAG
AACATTCTCGCAAGGTTGTAGCAGCAAGCAAACGCGAGGAGTCCCGAAGT
CAAGTACCCGCACAACTGATGCAGTAGCCGCTGTAGATCCAGCACTAGGG
GATAGCACCCAAGTAAGGCAAGTAGCCGCCTGTTTAGCGCCGCGAGCCTT
GCACGTAGCTACCGTAGCTGGGGACTTCAGGTCGAAACATAGGTCTAACC
TAATGAGAACTGACCGTAATGAAGAATTTCATGCTTTTTACATGTCTGCA
CTCGCTGGATATCCCGTGTGTCCATCGGTATTGCGATCGACATCCAAGCG
AGTGCGTGTACCAGCCAGAATAAACAATGAATCGGTTGATGAA

Coding sequence (CDS) from alignment at Scaffold_38:438121..440113+

>EsuBft123_23a-0001 ID=EsuBft123_23a-0001|Name=EsuBft123_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_38:438121..440113+ (Ectocarpus subulatus male Bft15b)
ATGCTTATGCCGGGAGCCGCTCACCAGCAAGACATCCAGAAGCTCCGAAG
TACTGCGGACGACAACAAGGACCGCATCACTGCCATTGAAAACTGTATTT
CAGGGCAGGAAGCGTTCGTGTCCAGTGGTGGAGCATACGGCGCGCGACGC
GGTGGGCGTGCTCAGCGGGGGACCGACAAACGTGACAAGGATAGTTCCAA
ATCCCGGGGTCCTCCCGCGCGGGCGAAGGCGAAAGTATCGTTCGCTGGTA
CTGCCAAGCCCGACATCGCCAAACATAGGAAGGAATGTGACTTTATTGGT
TGTCGTTTCAGTAACATACGCTTCACGCACACCCGCGCGGAGTGCAAAAA
CGAACAAGCCGCTAAAAATGAGGGGTACACGGTTACGAAAAACTAG