EsuBft123_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft123_19a-0001
Unique NameEsuBft123_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:399673..403496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_005982-tr
ProteomeIdEsuBft123_19
Protein domainsSSF56672
Protein domainsG3DSA
Protein domainsIPR000477
Protein domainsPTHR10178
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 412 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length2679
Hectar predicted targeting categoryother localisation
Evalue1.05e-76
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3AH2J@33154|Opisthokonta,3BX3Q@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft123_19aEsuBft123_19aEctocarpus subulatus male Bft15bgeneScaffold_38 399673..403496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_19a-0001EsuBft123_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 401662..403496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_19a-0001-exonagat-exon-69286Ectocarpus subulatus male Bft15bexonScaffold_38 399673..400313 -
EsuBft123_19a-0001-exonagat-exon-69285Ectocarpus subulatus male Bft15bexonScaffold_38 400628..400728 -
EsuBft123_19a-0001-exonagat-exon-69287Ectocarpus subulatus male Bft15bexonScaffold_38 401486..401962 -
EsuBft123_19a-0001-exonEsuBft123_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 402037..403496 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_19a-0001-exonagat-three_prime_utr-2247Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 399673..400313 -
EsuBft123_19a-0001-exonagat-three_prime_utr-2248Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 400628..400728 -
EsuBft123_19a-0001-exonagat-three_prime_utr-2249Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 401486..401661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_19a-0001-cdsEsuBft123_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 401662..401962 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft123_19a-0001 ID=EsuBft123_19a-0001|Name=EsuBft123_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2679bp|location=Sequence derived from alignment at Scaffold_38:399673..403496- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAGGCTCTTGCCGTTGCCTACACTGATTGTCGTCCACCGGAAGA
TTGTACCGTCGTTGTCGAACCCCGGATCGTCTCCGAACAAGACTTAGTCC
ACGACGAAACACTTAGTCCCTTCCAAAACATTGTCGTTGCCCGTACTCTA
GCTACATGGCACGCTTCCGATGGATCTGTCGTTGTCCAAATCGCCAATCC
TTCTGCCGATGGCGTCCGTCTTTATGATGGCCTATGTCTTGGTCAATTGT
CCACAGTGACTATCACTGAACCCGACCAACTCCATGTCAATTCTGTCGCG
AACACACCCGTCACTGACGACGAAATTCGCCACGCCAAGTCCGAACTCGA
AGAGCCTCTGTCCAAGGCCTTCGACAACACAACGCTCACCAACGAGCAAC
AACAAGCTGTCCTCGACTTGTGCGCAAAATACCGTCCTGTCTTTTCTCTG
TCAATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGT
GCCGCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCC
GCGTAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGT
ATCATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGC
TAAAAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCA
ACCGCCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGC
CTGGATGCCGTCGGCCAAGCTCTCTACATCACCGTCGCCGACATCCTCAG
CGCCTTCTGGCAGATCCCCGTGGCAGAGGAGCACGTCGACCGTACTGCAT
TCGTCACCCCTACCGGCAAGTACTGTTTCAAGCGTATGCCGTTTGGAGTA
GCGAACGCACCGTGGCTTTTCCAACATGTCATGTCTCTAGCTCTAGGTCA
TCTAGGTCCAGACTCTGGTGTTCTTTCGTACATGGACGATTTGATCTGTA
TCAATCACACGTTCGAAGCTCACCTGTCATCTCTCGAGAAAATGTTCGCA
GCATTGCAAGCAGCAGGGCTCACGCTCAAACCGTCGAAAATTCAATTCGG
TCAGAAAGAAGTCGACTATTTGGGTCATGTCATCTCCGCAAAAGGTATCT
CTGTCAGCACCGACCGTATTGATGCCATTCGCAACCTGCCCACTCCCACC
TGCATCAAAGATCTCCGATCTGTCCTAGGCATGGTAAATTTTGTCCGACG
TTTCATCAAAGATTACGCCGATGTCACTGCTCCGCTGGTCGAACTCACTC
GAAAAGATTATGTCAAACGTGCTAGTTTTAAAAAAGCATGGGGGTCGGCC
CAAGATGCCGCCTTCGAAAATGTCAAGAGAGTCCTGTCCTCTACACCTGT
CCTCCACTTTCCCGATTTTCTCGAGAATTTGTCGTTCACACCGACGCCTC
TGAACAAGGCCAAACGTTTTTCTAAGGGCCAACGCCATTACAGCGCTACC
ATGAAAGAATACATTGCGGTTGTCTGGGCCCTCACCCACTGGCGCCCGTA
CCTTTGGGGCCGCCATTTTACGTGTAGCACTGACCATCAAGCGCTTACGT
ATCTGTACCACATGCAAGACACGTCCAACATGTTGACGCGCTGGGCTATC
GCACTCCAGAACTACGATTCCACACTCTTAGATGCGATCATAAATGTGTG
GTCTGGTCTGGGATATATGGGAAAGTATCTCCTATTACTATGCATTGCAT
ACAGGTCCTAGGTATATATCAACTCACGGATAACATCGACCGGTAATCAT
GGATGTGCGGCGTAGACAAACATAAGCGCTCGATGTGAACGAGGACTCCA
GGGTGAATAACAACGGTGGGCTAAAATCGTGAGACAGAAAACTCGAACGA
ATACCGAATGCTGAAGTCAATCTACAGCACTACCACGGTATCGTACATAC
TGAACTGCCATCCACGCTGGCTGGATTTTGCTTGCTGAGCCCTCTTCGCG
TTAGATCGAAGACAGACGCGTGCACCGCAGGAGAACAGGTTGAGTTGGTG
TAGCTCACCATTGAGCAGCGGTAAAGCGCAATGAGCAGCACCCGACACAG
AGGACAACACAACACTTACTACAAAGATCCTATCCACTCGGCCTGCTGTT
TTCAGATTACAGCAACAACAGGCGCAGGGCAGAGTGTCGCAACCTGGGTG
TTGCTTGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGACTC
CCATATTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCATAG
GGCGGCAGCCGCGCTGACGGCCAGCATCATATAGACGGCCAATCCGAGAG
AATTAGCGTGTAGGAGGCCCTGCTGCTCTTCTGCTGCGTGATGCCGTGGA
TTGATGTTGACGTGTCCGACCAAAAACAGAACATCTCGCCGCATTTTTTC
GAACGGCATTTTGGTGAGGTGGCACACATCTCTCACACACCTTATTGAGC
AGCACCCAAGGATCCAATACCCACGAAGCAGTACGGCGCCGGGAGATGGT
ATCATATAGACAGCCGAACCGAAGAAATCAGCGCGTTGGAGGTCTTGGTA
CTGCTGCTGTACCCATTCTACTATTTATTTTCGAGTTTGCTATGTGTGAT
TGAAAAAAATTCCCCGGCACCAACTGCAG
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protein sequence of EsuBft123_19a-0001

>EsuBft123_19 ID=EsuBft123_19|Name=EsuBft123_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=586bp
MREALAVAYTDCRPPEDCTVVVEPRIVSEQDLVHDETLSPFQNIVVARTL
ATWHASDGSVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVA
NTPVTDDEIRHAKSELEEPLSKAFDNTTLTNEQQQAVLDLCAKYRPVFSL
SMSELGRCTIAEATFPVPPGTRPVDRPPYRPNPRVATVSDKCVAEMLEWG
IIEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESC
LDAVGQALYITVADILSAFWQIPVAEEHVDRTAFVTPTGKYCFKRMPFGV
ANAPWLFQHVMSLALGHLGPDSGVLSYMDDLICINHTFEAHLSSLEKMFA
ALQAAGLTLKPSKIQFGQKEVDYLGHVISAKGISVSTDRIDAIRNLPTPT
CIKDLRSVLGMVNFVRRFIKDYADVTAPLVELTRKDYVKRASFKKAWGSA
QDAAFENVKRVLSSTPVLHFPDFLENLSFTPTPLNKAKRFSKGQRHYSAT
MKEYIAVVWALTHWRPYLWGRHFTCSTDHQALTYLYHMQDTSNMLTRWAI
ALQNYDSTLLDAIINVWSGLGYMGKYLLLLCIAYRS
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mRNA from alignment at Scaffold_38:399673..403496-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft123_19a-0001 ID=EsuBft123_19a-0001|Name=EsuBft123_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3824bp|location=Sequence derived from alignment at Scaffold_38:399673..403496- (Ectocarpus subulatus male Bft15b)
ATGCGTGAGGCTCTTGCCGTTGCCTACACTGATTGTCGTCCACCGGAAGA
TTGTACCGTCGTTGTCGAACCCCGGATCGTCTCCGAACAAGACTTAGTCC
ACGACGAAACACTTAGTCCCTTCCAAAACATTGTCGTTGCCCGTACTCTA
GCTACATGGCACGCTTCCGATGGATCTGTCGTTGTCCAAATCGCCAATCC
TTCTGCCGATGGCGTCCGTCTTTATGATGGCCTATGTCTTGGTCAATTGT
CCACAGTGACTATCACTGAACCCGACCAACTCCATGTCAATTCTGTCGCG
AACACACCCGTCACTGACGACGAAATTCGCCACGCCAAGTCCGAACTCGA
AGAGCCTCTGTCCAAGGCCTTCGACAACACAACGCTCACCAACGAGCAAC
AACAAGCTGTCCTCGACTTGTGCGCAAAATACCGTCCTGTCTTTTCTCTG
TCAATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGT
GCCGCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCC
GCGTAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGT
ATCATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGC
TAAAAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCA
ACCGCCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGC
CTGGATGCCGTCGGCCAAGCTCTCTACATCACCGTCGCCGACATCCTCAG
CGCCTTCTGGCAGATCCCCGTGGCAGAGGAGCACGTCGACCGTACTGCAT
TCGTCACCCCTACCGGCAAGTACTGTTTCAAGCGTATGCCGTTTGGAGTA
GCGAACGCACCGTGGCTTTTCCAACATGTCATGTCTCTAGCTCTAGGTCA
TCTAGGTCCAGACTCTGGTGTTCTTTCGTACATGGACGATTTGATCTGTA
TCAATCACACGTTCGAAGCTCACCTGTCATCTCTCGAGAAAATGTTCGCA
GCATTGCAAGCAGCAGGGCTCACGCTCAAACCGTCGAAAATTCAATTCGG
TCAGAAAGAAGTCGACTATTTGGGTCATGTCATCTCCGCAAAAGGTATCT
CTGTCAGCACCGACCGTATTGATGCCATTCGCAACCTGCCCACTCCCACC
TGCATCAAAGATCTCCGATCTGTCCTAGGCATGGTAAATTTTGTCCGACG
TTTCATCAAAGATTACGCCGATGTCACTGCTCCGCTGGTCGAACTCACTC
GAAAAGATTATGTCAAACGTGCTAGTTTTAAAAAAGCATGGGGGTCGGCC
CAAGATGCCGCCTTCGAAAATGTCAAGAGAGTCCTGTCCTCTACACCTGT
CCTCCACTTTCCCGATTTTCTCGAGAATTTGTCGTTCACACCGACGCCTC
TGAACAAGGCGTAGGCGCTTTCCTCGCTCAACCATCCCGTGATAGCGCCG
ACGATAAAGAACTCGATATCGTCGCGTTTTACAGCAAACGTTTTTCTAAG
GGCCAACGCCATTACAGCGCTACCATGAAAGAATACATTGCGGTTGTCTG
GGCCCTCACCCACTGGCGCCCGTACCTTTGGGGCCGCCATTTTACGTGTA
GCACTGACCATCAAGCGCTTACGTATCTGTACCACATGCAAGACACGTCC
AACATGTTGACGCGCTGGGCTATCGCACTCCAGAACTACGATTCCACACT
CTTAGATGCGATCATAAATGTGTGGTCTGGTCTGGGATATATGGGAAAGT
ATCTCCTATTACTATGCATTGCATACAGGTCCTAGGTATATATCAACTCA
CGGATAACATCGACCGGTAATCATGGATGTGCGGCGTAGACAAACATAAG
CGCTCGATGTGAACGAGGACTCCAGGGTGAATAACAACGGTGGGCTAAAA
TCGTGAGACAGAAAACTCGAACGAATACCGAATGCTGAAGTCAATCTACA
GCACTACCACGGTAAGTATGCGGGTCTTACCGCGGATTGGCGAAAACCTC
ACGGATCGGAGTGCTCGCACGGGCTGTGCTTTAGACACTACGTATTTTCA
GAACCAAGCATTAAATTAGTTCATTTTCCACCCACAGGAATGTATCGGGT
TCATGGCACGCGTCGGTATCTTGGCACCCCTTTGCGATGGAATCTGAGAA
CGAAAGCTTGAAAAGGAGACGCACAGCACGTGTGCCAAGACCCGCACGTA
CTACGGGGAGTCTAGACTGCTGTAGACTAGTCTAGGCTAGGGATCAAAAA
CAAAAAACTTCTAGAACAAATTGACACTGAATATGCTATGCATAGTCTAG
CACCGTAGCCTGCAGACGATTTTGCCAGATGATTGTTCCCTCAAGCCGCA
TGGTGATGTTTGCGATTTGCGGGAATAAAGCAAGACGCACAGATCAGACA
CGTGGTGTCTGCCCAACACGTGTGTGTGTTAGGTGGGTGCAGCACGCAGC
ACGGCTGTTGCCAAAACATGTGTTGGGGTCCGTGGATGACATGTTTTCGA
GCGGGGGGCACCGTTGGATGGTGTGAAGCGTACAGCAGGTAGTGCTGAGA
CAGACAGCTATGCATGTGAGCACAGAACACACGAACGAACACACCCTGTG
TGTACCTCGGGGCAACTCTTTTGGAAAGAGAAGAGCTGATGAGGTGGAAG
TCCGCATTTTTTCCGGCCCATCCCAAGCTGATCCAAGACCTTCCTCGCAG
TGCCACCCACAAGTGCAGGTATCGTACATACTGAACTGCCATCCACGCTG
GCTGGATTTTGCTTGCTGAGCCCTCTTCGCGTTAGATCGAAGACAGACGC
GTGCACCGCAGGAGAACAGGTGATGAGTTCCTCTTATTATACTGAATGGT
GCATCAAACAGTAACCCAGGAGTTGTTGTAGACTGGCGACCAGAACAGCA
CATCGGACCAAATTCACAAGAAGAAATTGCGCATGCCTTTCCGCGGATGT
ACGTGACATCGGCGGGTTATCACAAACAGCCAAGGGTAGTTCTTAACGCT
TCGGAAAAGTGGTGAAATTTTCCACGGAACGGTGACAAGAAAACCCGGCC
TTTTTTCGCTTGTTCGTTCGTGCTGTCATCGCAAAAAAGTCCGTTCCCTT
CCCTGAATACACGCTTTGCTCGGCACACAACAGGTTGAGTTGGTGTAGCT
CACCATTGAGCAGCGGTAAAGCGCAATGAGCAGCACCCGACACAGAGGAC
AACACAACACTTACTACAAAGATCCTATCCACTCGGCCTGCTGTTTTCAG
ATTACAGCAACAACAGGCGCAGGGCAGAGTGTCGCAACCTGGGTGTTGCT
TGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGACTCCCATA
TTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCATAGGGCGG
CAGCCGCGCTGACGGCCAGCATCATATAGACGGCCAATCCGAGAGAATTA
GCGTGTAGGAGGCCCTGCTGCTCTTCTGCTGCGTGATGCCGTGGATTGAT
GTTGACGTGTCCGACCAAAAACAGAACATCTCGCCGCATTTTTTCGAACG
GCATTTTGGTGAGGTGGCACACATCTCTCACACACCTTATTGAGCAGCAC
CCAAGGATCCAATACCCACGAAGCAGTACGGCGCCGGGAGATGGTATCAT
ATAGACAGCCGAACCGAAGAAATCAGCGCGTTGGAGGTCTTGGTACTGCT
GCTGTACCCATTCTACTATTTATTTTCGAGTTTGCTATGTGTGATTGAAA
AAAATTCCCCGGCACCAACTGCAG
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Coding sequence (CDS) from alignment at Scaffold_38:399673..403496-

>EsuBft123_19a-0001 ID=EsuBft123_19a-0001|Name=EsuBft123_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1761bp|location=Sequence derived from alignment at Scaffold_38:399673..403496- (Ectocarpus subulatus male Bft15b)
ATGCGTGAGGCTCTTGCCGTTGCCTACACTGATTGTCGTCCACCGGAAGA
TTGTACCGTCGTTGTCGAACCCCGGATCGTCTCCGAACAAGACTTAGTCC
ACGACGAAACACTTAGTCCCTTCCAAAACATTGTCGTTGCCCGTACTCTA
GCTACATGGCACGCTTCCGATGGATCTGTCGTTGTCCAAATCGCCAATCC
TTCTGCCGATGGCGTCCGTCTTTATGATGGCCTATGTCTTGGTCAATTGT
CCACAGTGACTATCACTGAACCCGACCAACTCCATGTCAATTCTGTCGCG
AACACACCCGTCACTGACGACGAAATTCGCCACGCCAAGTCCGAACTCGA
AGAGCCTCTGTCCAAGGCCTTCGACAACACAACGCTCACCAACGAGCAAC
AACAAGCTGTCCTCGACTTGTGCGCAAAATACCGTCCTGTCTTTTCTCTG
TCAATGTCCGAACTCGGCCGCTGCACCATTGCAGAAGCCACGTTCCCCGT
GCCGCCAGGCACGCGTCCTGTCGATCGTCCGCCGTACCGTCCGAATCCCC
GCGTAGCCACTGTCTCCGACAAATGTGTCGCCGAAATGCTCGAATGGGGT
ATCATTGAAAAACGGCCCAGCGCATGGGGAAGCCCATGCACACTTGTCGC
TAAAAAGAACGGCAGTCCCCGTTTCTGCGTCGACTACCGCCACACCCTCA
ACCGCCACATCGTCCGTAAAACCTGGCCCATGCCTAACCTCGAGTCCTGC
CTGGATGCCGTCGGCCAAGCTCTCTACATCACCGTCGCCGACATCCTCAG
CGCCTTCTGGCAGATCCCCGTGGCAGAGGAGCACGTCGACCGTACTGCAT
TCGTCACCCCTACCGGCAAGTACTGTTTCAAGCGTATGCCGTTTGGAGTA
GCGAACGCACCGTGGCTTTTCCAACATGTCATGTCTCTAGCTCTAGGTCA
TCTAGGTCCAGACTCTGGTGTTCTTTCGTACATGGACGATTTGATCTGTA
TCAATCACACGTTCGAAGCTCACCTGTCATCTCTCGAGAAAATGTTCGCA
GCATTGCAAGCAGCAGGGCTCACGCTCAAACCGTCGAAAATTCAATTCGG
TCAGAAAGAAGTCGACTATTTGGGTCATGTCATCTCCGCAAAAGGTATCT
CTGTCAGCACCGACCGTATTGATGCCATTCGCAACCTGCCCACTCCCACC
TGCATCAAAGATCTCCGATCTGTCCTAGGCATGGTAAATTTTGTCCGACG
TTTCATCAAAGATTACGCCGATGTCACTGCTCCGCTGGTCGAACTCACTC
GAAAAGATTATGTCAAACGTGCTAGTTTTAAAAAAGCATGGGGGTCGGCC
CAAGATGCCGCCTTCGAAAATGTCAAGAGAGTCCTGTCCTCTACACCTGT
CCTCCACTTTCCCGATTTTCTCGAGAATTTGTCGTTCACACCGACGCCTC
TGAACAAGGCCAAACGTTTTTCTAAGGGCCAACGCCATTACAGCGCTACC
ATGAAAGAATACATTGCGGTTGTCTGGGCCCTCACCCACTGGCGCCCGTA
CCTTTGGGGCCGCCATTTTACGTGTAGCACTGACCATCAAGCGCTTACGT
ATCTGTACCACATGCAAGACACGTCCAACATGTTGACGCGCTGGGCTATC
GCACTCCAGAACTACGATTCCACACTCTTAGATGCGATCATAAATGTGTG
GTCTGGTCTGGGATATATGGGAAAGTATCTCCTATTACTATGCATTGCAT
ACAGGTCCTAG
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