EsuBft123_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft123_14a-0001
Unique NameEsuBft123_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:347004..348173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQ30
ProteomeIdEsuBft123_14
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSSF54648
Protein domainsIPR001372
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notedynein light chain cytoplasmic os:caenorhabditis elegans gn:dlc-1 pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length439
Hectar predicted targeting categoryother localisation
Evalue8.45e-64
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
COG categoryS
BRITEko00000,ko00001,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0008092
GO0044271
GO0051017
GO0051959
GO0034454
GO0048477
GO0000132
GO0030235
GO0008407
GO0045505
GO0005868
GO0002119
GO0007476
GO0017111
GO0040011
GO0007154
GO0035046
GO0006260
GO0009792
GO0019899
GO0040035
GO0007291
GO0007290
GO0016459
GO0006915
GO0050790
GO0006914
GO0003333
GO0006898
EC3.6.1.15
GO0042803
GO0005515
GO0008039
GO0035071
GO0005814
GO0040020
GO0043652
GO0044700
GO0010171
GO0042127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft123_14aEsuBft123_14aEctocarpus subulatus male Bft15bgeneScaffold_38 347004..348173 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_14a-0001-exonEsuBft123_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 347004..347210 -
EsuBft123_14a-0001-exonagat-exon-69265Ectocarpus subulatus male Bft15bexonScaffold_38 347942..348173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_14a-0001-cdsEsuBft123_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 347004..347210 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_14a-0001-exonagat-five_prime_utr-1492Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 348053..348173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft123_14a-0001EsuBft123_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 347004..348052 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft123_14a-0001 ID=EsuBft123_14a-0001|Name=EsuBft123_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=439bp|location=Sequence derived from alignment at Scaffold_38:347004..348173- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGTTAGGACTTGGACGAGCAAGATCATCAACAAAGGCAACATCTTTGC
ATCCAAGACGGCAACTTGTCGGTCGATCAAAAGGGGAGCTGCCGCGGGGT
TCTGTGCAGATAGCTACCATCATGTCGAATAAACACCAACATATTTTTGC
GGAAGACATGTCGGATGAGATGTGCCACTTTGCCTTGGAAACCAGCCAAG
AAGCGTTCCAGTTGACGATCACGAAAGGCCAGGTGTTCACAACGATTGCT
TCGTGCATCCGCAAAGCATTCGAGAAGTCGTACGGCCGAGGCTGGAACGT
TGTTGTTGGGAGAAGTTTTGGGGCCTACGTGACCCACGAGATCAAGACGT
ACATGTACTTTACTGTTGTCCCGGGGGTCTATGTGCTGCTGTGGAGGTGG
GTCTTGATGTCCGAAGGATTCGTCTTTTTGCATCGATAG
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protein sequence of EsuBft123_14a-0001

>EsuBft123_14 ID=EsuBft123_14|Name=EsuBft123_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAF
EKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMSEGF
VFLHR
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mRNA from alignment at Scaffold_38:347004..348173-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft123_14a-0001 ID=EsuBft123_14a-0001|Name=EsuBft123_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_38:347004..348173- (Ectocarpus subulatus male Bft15b)
GTGGTTAGGACTTGGACGAGCAAGATCATCAACAAAGGCAACATCTTTGC
ATCCAAGACGGCAACTTGTCGGTCGATCAAAAGGGGAGCTGCCGCGGGGT
TCTGTGCAGATAGCTACCATCATGTCGAATAAACACCAACATATTTTTGC
GGAAGACATGTCGGATGAGATGTGCCACTTTGCCTTGGAAACCAGCCAAG
AAGCGTTCCAGTTGACGATCACGAAAGGCCAGGTGGGACGCGAGGAATGC
ACACGACGATACTTTGCTTGACTAGCTATGGACCGGTAGTTGAACAAGGC
CAAACTACATAGATTTGTGACTGCTACACCTACACCCAACACTTGTCACA
ACGACGTTTGACTCGCCGCCACACGGCCAGTAAATGAAGTTCATCCCAAC
CGAATCGCAGTATTCCGTTGCGGGTGGTGTATTCGTCATACTGTAGCCGC
CATATGTGGGTGATATGTATATGGGAGAGAAAACAGAGCCACACCGAGGA
AAATGGCGACAGCATTCTAGTCTAAACTTGCAATAGGGCGGAACGTTTGA
TGGTCATGACTGGACATTGGAATCTGGAAAACCACGTATGATGTACTCGA
TCACAACAAATCCGGAGTGTGATATTGCTGGCAAGAAGACTTATTGTCCC
CCGGATCGCGACAAGAGCGAAGAAGCGTTCCTGGCCAACTTCGCAAATTG
ATCGGTCAATAGAAAGATGGAAATTTGAGGGCTGCTGGAGCAGACACAGT
AAACGTTGGGTATCGGGATCGATTAGTCTAGTCAAAATGATTTACGTAGC
GAACGTCCAAGGAATAACTTGAGCGCAAGCAATCGTGGCTTATAAACTTG
CCTTGTCTTCGTTATTTCTCCATGACTACCGGCGGATTCTCAATTATCAC
CGGGTGATCAACCCATTGACTACAATAAATACGACGACGACGACGACGAC
GACGACGAGCAAGGTGTTCACAACGATTGCTTCGTGCATCCGCAAAGCAT
TCGAGAAGTCGTACGGCCGAGGCTGGAACGTTGTTGTTGGGAGAAGTTTT
GGGGCCTACGTGACCCACGAGATCAAGACGTACATGTACTTTACTGTTGT
CCCGGGGGTCTATGTGCTGCTGTGGAGGTGGGTCTTGATGTCCGAAGGAT
TCGTCTTTTTGCATCGATAG
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Coding sequence (CDS) from alignment at Scaffold_38:347004..348173-

>EsuBft123_14a-0001 ID=EsuBft123_14a-0001|Name=EsuBft123_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_38:347004..348173- (Ectocarpus subulatus male Bft15b)
ATGTCGAATAAACACCAACATATTTTTGCGGAAGACATGTCGGATGAGAT
GTGCCACTTTGCCTTGGAAACCAGCCAAGAAGCGTTCCAGTTGACGATCA
CGAAAGGCCAGGTGTTCACAACGATTGCTTCGTGCATCCGCAAAGCATTC
GAGAAGTCGTACGGCCGAGGCTGGAACGTTGTTGTTGGGAGAAGTTTTGG
GGCCTACGTGACCCACGAGATCAAGACGTACATGTACTTTACTGTTGTCC
CGGGGGTCTATGTGCTGCTGTGGAGGTGGGTCTTGATGTCCGAAGGATTC
GTCTTTTTGCATCGATAG
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