EsuBft123_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft123_11a-0001
Unique Name	EsuBft123_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_38	contig	Scaffold_38:323466..326261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FQ33
ProteomeId	EsuBft123_11
Protein domains	Coil
Protein domains	SSF57850
Protein domains	PTHR15710
Protein domains	IPR001841
Protein domains	IPR013083
Owner	apollo_admin@sb-roscoff.fr
Note	e3 ubiquitin-protein ligase rnf6 os:mus musculus gn:rnf6 pe:1 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	2796
Hectar predicted targeting category	other localisation
Evalue	0.0
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K16274
EC	2.3.2.27
Description	ubiquitin-protein transferase activity
COG category	O
BRITE	ko00000,ko01000,ko04121

Cross References

External references for this mRNA


Database	Accession
GO	0060816
GO	0004842
GO	0044428
GO	0042802
GO	0003824
GO	0009501
GO	0008134
GO	0048523
GO	0009630
GO	0000578
GO	0000209
GO	0016881
GO	0042995
GO	0042787
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft123_11a	EsuBft123_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_38 323466..326261 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_11a-0001-exon	EsuBft123_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_38 323466..326261 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_11a-0001-cds	EsuBft123_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_38 323466..325853 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_11a-0001-exon	agat-three_prime_utr-2238	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_38 325854..326261 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft123_11a-0001	EsuBft123_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_38 323466..325853 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_38:323466..326261+
coding sequence from alignment at Scaffold_38:323466..326261+

spliced messenger RNA

>EsuBft123_11a-0001 ID=EsuBft123_11a-0001|Name=EsuBft123_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2796bp|location=Sequence derived from alignment at Scaffold_38:323466..326261+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAACCCGTCCCGTGGTGCCCACCGCACGTGGGCTAGAACTACA
GAGCTTGATTCCTCGCACGCTGTCCGCGCGGGCGTCAACCTCGTCGCTGT
TCACACCTCTTCCTGGGGCTGGTTTAGCCGACACGCCTCGCTCTCGGTCT
CCGCCTTCGTCGCAGCAGCAGCAACAACAGCCACAACAGGACCGGCAGAA
TCATCCCACGGCCTACCCGCTTAGAGTCCCGAATCGCCACGGAAGGTCGG
ACGGCGGTCGAGCTAGTATACGCCGTTTGGCCGGGGGCGGTAGAGATGCA
TGGAGGACAGCACCGGTGGCGTACAGCGCGGTCGTGAGGGGGACGGGGCG
GGATACCACGGCGCTGAGGGCAGTGTCGGCACGACTTGACGCGGCCTCAA
CCGCAATAGATGCCGTAGAGATAGGTGTGAGATCGGCATCGGATAGCCTG
GATTCTCTCCTACAGCTGTTGGAATCCCGGCATGGACCAGCGGTGTCGCA
AACGTCGCTTTCATCGACCAGTGCTGAGGTGGATGCGTTCGAGAATGGAT
CTGCTGACCCTGGTCCTTCTTCCCGAGGAATAGGAGAAGGAGGGCGAGCA
GCAGCATCATCTGACTCGCAAGCATCCGCTGGTGCAATGTCTATGCGTTC
ACCGAGGAGTTCAGTTTCACCGCCGGCTGTGTCTCTTCCTACTTCTTCTG
GGTTGATGGTAGGGGCTTCGTCAAGTGAATCACCACGGGACGAGTTCAAT
GTTTCAACCCCACCGCCGCAGCCGATGGGACCTCCACGGTACGCCAACAG
AGACGGTGCACCCATCGTTGCCCGTGTGCCAGAAGGTGGTGGAGGGTCGC
GTGCGGCCATTATGCTGAGAAGGGAACAACAAGCAGGTTTGACTGCATTC
AGCAACCCAGAGGCTGGGGAACATCTTTGTCGGTCGCCTGCTGTCCTGCC
GAGGCAAGATGGTGGAGCACAAGAAGGTTCTGTCGCCACTGGAGACACTT
CAATTGACGAGACGAACGAAGAGCATAGCACGCGGACGAGGTCAGGTCAA
CATTTGACCTCTGCACTTGCGCTACCGCGCCCGGTGTCCTCGCCAGCAGT
ACAGGAACTTGTTGAGGAGGTCAATAGTAGTAGGAGGACGGCGGAGCGAG
AAACAAGCGAAAGCCATGGTGTCGGAATGGCGGGATCGGCTACCGCGGGA
CAACACCTTCCCGCAGACATCGGCATTGGTGGGACCATGGAAGCAGCACC
TACTGACCTCGCTGCCTTGAGAATGCTCGGCAGTGATAGGACTACGTCTC
TGAACAGTGTGCCGCGCTCGGTTCGAGAAGCTGGAAGCAGACGGGCGTCT
CCGCGCGGGATGGAAGGAACGGGCAGCGGTGCCGCCTCGTCAACACGTGA
GACATACGCCGGCGAAACCTCCGGCCGCGGCAACGTGGCTCTCCCGGTCC
GGGAGCTGAACGGCATCGACACCGAGCGCGGGAGGCTGATTTTGGAGATC
GCTCGCCTCCGTGGGCAACAGAATCAATCTCTAGTCCACCTCCATCGCCT
CCAACACGAGCAGTTTGTCGTGCGCCAGCGGCAGGTGTCCACCCTATCCG
ACATTGTCAACAGCTTTGGTCGAACCGTGGCGGCGGCGGCCGCGCTCCCT
CACGGGGAGGACTCTTCTCTGGGGCGCATCAGCAGCGACGTTGTGTCCAC
GCTGCGGCGGATGCTCCGTCTCTTGTCTGCGACGGTCCCCGCTGCGACTG
CCGCACAGTTAGCCCCGGGCAATTCTCCCGTGCTGACGACGACGTCTTCC
GTATCCGATGGCACCCCGCCCCCCGCGCCTAACACACCACGTCCCACCGC
TGTACGAGAAGGACAGGTAGCCAGCGGCTCCGCCGGCACTTACTCCGTGG
GAGGGCGGGTGGCGCTACGGCCCGCCGGAGTGGACCTCACGCAAGAGGTG
ATCGATGCCGCTCTCCAGGCGCTTCCCAGATTGGCGGCCGCGGCGACAGC
GATATCGGGTGCAAGCCGCATGCAAGGATACCTTGCGGACCTGGCCGGTG
GTGGAACAAGCGATACCGTGGGGCGTGGGAGCGACTACACTGGTCGTTGC
TGCTCAAAAGAGACTATTGCCGCGCTCCCGGATGCCTCTCAACCCGTGGA
GGGAGCTGTTGGAGAAGTTGACGGCGGTGATGTTCGGGGGTGCGTGATCT
GCCTGTCAGAGAATGACACGGCGGGGCAGCACCTCTGTCGCCTCCCCTGC
AACCACGTCTTCCACAGGGTCTGTGTTGGGAAATGGCTCTCGATGCAGGA
TTCGTGTCCGACCTGTAGGAGGCAAGTGCCGAACGTCGAAATTGGCTCCA
CTCTCGCAACTACGGCGCCCCCCCATGAAGTGGCGTGAACTTTTACGTTA
GCGATGTGTGTCTCTCTGTGAACGGTATGCCCAAAGGACTGCAAGTTGAG
GCGATTTTGTTTTGGGCGTCTTCGCGGGCATTGGCATGTGTTAACCTGTC
TGCGTGTGTAATTGTACATCCTTGTTTGCATATCTCAACTCAAGTGTGCT
CGCGTCTGTGCTCGCGTCTGTGTTTGTACTTTACTGTGTACGTGCTTTGC
TATTCTGTATGTTGTACCTGGTAGAATTGGTGAGCTGTCCTGCATAGCTT
CCGTCGGAATTACGACCTTTGTGTAGATCATGTGCATGTGTGCATATGCA
TACGCGTACCTGTTTCGGGTGTTCGACGCTCTCCCCACCCCATGGAGGCC
CACATCCACCTGATCTTTCAGTTCACTGGTGTTGACCGCGCTACTT

protein sequence of EsuBft123_11a-0001

>EsuBft123_11 ID=EsuBft123_11|Name=EsuBft123_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=795bp
MSSTRPVVPTARGLELQSLIPRTLSARASTSSLFTPLPGAGLADTPRSRS
PPSSQQQQQQPQQDRQNHPTAYPLRVPNRHGRSDGGRASIRRLAGGGRDA
WRTAPVAYSAVVRGTGRDTTALRAVSARLDAASTAIDAVEIGVRSASDSL
DSLLQLLESRHGPAVSQTSLSSTSAEVDAFENGSADPGPSSRGIGEGGRA
AASSDSQASAGAMSMRSPRSSVSPPAVSLPTSSGLMVGASSSESPRDEFN
VSTPPPQPMGPPRYANRDGAPIVARVPEGGGGSRAAIMLRREQQAGLTAF
SNPEAGEHLCRSPAVLPRQDGGAQEGSVATGDTSIDETNEEHSTRTRSGQ
HLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVGMAGSATAG
QHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRAS
PRGMEGTGSGAASSTRETYAGETSGRGNVALPVRELNGIDTERGRLILEI
ARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALP
HGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGNSPVLTTTSS
VSDGTPPPAPNTPRPTAVREGQVASGSAGTYSVGGRVALRPAGVDLTQEV
IDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRC
CSKETIAALPDASQPVEGAVGEVDGGDVRGCVICLSENDTAGQHLCRLPC
NHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAPPHEVA

mRNA from alignment at Scaffold_38:323466..326261+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft123_11a-0001 ID=EsuBft123_11a-0001|Name=EsuBft123_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2796bp|location=Sequence derived from alignment at Scaffold_38:323466..326261+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCAACCCGTCCCGTGGTGCCCACCGCACGTGGGCTAGAACTACA
GAGCTTGATTCCTCGCACGCTGTCCGCGCGGGCGTCAACCTCGTCGCTGT
TCACACCTCTTCCTGGGGCTGGTTTAGCCGACACGCCTCGCTCTCGGTCT
CCGCCTTCGTCGCAGCAGCAGCAACAACAGCCACAACAGGACCGGCAGAA
TCATCCCACGGCCTACCCGCTTAGAGTCCCGAATCGCCACGGAAGGTCGG
ACGGCGGTCGAGCTAGTATACGCCGTTTGGCCGGGGGCGGTAGAGATGCA
TGGAGGACAGCACCGGTGGCGTACAGCGCGGTCGTGAGGGGGACGGGGCG
GGATACCACGGCGCTGAGGGCAGTGTCGGCACGACTTGACGCGGCCTCAA
CCGCAATAGATGCCGTAGAGATAGGTGTGAGATCGGCATCGGATAGCCTG
GATTCTCTCCTACAGCTGTTGGAATCCCGGCATGGACCAGCGGTGTCGCA
AACGTCGCTTTCATCGACCAGTGCTGAGGTGGATGCGTTCGAGAATGGAT
CTGCTGACCCTGGTCCTTCTTCCCGAGGAATAGGAGAAGGAGGGCGAGCA
GCAGCATCATCTGACTCGCAAGCATCCGCTGGTGCAATGTCTATGCGTTC
ACCGAGGAGTTCAGTTTCACCGCCGGCTGTGTCTCTTCCTACTTCTTCTG
GGTTGATGGTAGGGGCTTCGTCAAGTGAATCACCACGGGACGAGTTCAAT
GTTTCAACCCCACCGCCGCAGCCGATGGGACCTCCACGGTACGCCAACAG
AGACGGTGCACCCATCGTTGCCCGTGTGCCAGAAGGTGGTGGAGGGTCGC
GTGCGGCCATTATGCTGAGAAGGGAACAACAAGCAGGTTTGACTGCATTC
AGCAACCCAGAGGCTGGGGAACATCTTTGTCGGTCGCCTGCTGTCCTGCC
GAGGCAAGATGGTGGAGCACAAGAAGGTTCTGTCGCCACTGGAGACACTT
CAATTGACGAGACGAACGAAGAGCATAGCACGCGGACGAGGTCAGGTCAA
CATTTGACCTCTGCACTTGCGCTACCGCGCCCGGTGTCCTCGCCAGCAGT
ACAGGAACTTGTTGAGGAGGTCAATAGTAGTAGGAGGACGGCGGAGCGAG
AAACAAGCGAAAGCCATGGTGTCGGAATGGCGGGATCGGCTACCGCGGGA
CAACACCTTCCCGCAGACATCGGCATTGGTGGGACCATGGAAGCAGCACC
TACTGACCTCGCTGCCTTGAGAATGCTCGGCAGTGATAGGACTACGTCTC
TGAACAGTGTGCCGCGCTCGGTTCGAGAAGCTGGAAGCAGACGGGCGTCT
CCGCGCGGGATGGAAGGAACGGGCAGCGGTGCCGCCTCGTCAACACGTGA
GACATACGCCGGCGAAACCTCCGGCCGCGGCAACGTGGCTCTCCCGGTCC
GGGAGCTGAACGGCATCGACACCGAGCGCGGGAGGCTGATTTTGGAGATC
GCTCGCCTCCGTGGGCAACAGAATCAATCTCTAGTCCACCTCCATCGCCT
CCAACACGAGCAGTTTGTCGTGCGCCAGCGGCAGGTGTCCACCCTATCCG
ACATTGTCAACAGCTTTGGTCGAACCGTGGCGGCGGCGGCCGCGCTCCCT
CACGGGGAGGACTCTTCTCTGGGGCGCATCAGCAGCGACGTTGTGTCCAC
GCTGCGGCGGATGCTCCGTCTCTTGTCTGCGACGGTCCCCGCTGCGACTG
CCGCACAGTTAGCCCCGGGCAATTCTCCCGTGCTGACGACGACGTCTTCC
GTATCCGATGGCACCCCGCCCCCCGCGCCTAACACACCACGTCCCACCGC
TGTACGAGAAGGACAGGTAGCCAGCGGCTCCGCCGGCACTTACTCCGTGG
GAGGGCGGGTGGCGCTACGGCCCGCCGGAGTGGACCTCACGCAAGAGGTG
ATCGATGCCGCTCTCCAGGCGCTTCCCAGATTGGCGGCCGCGGCGACAGC
GATATCGGGTGCAAGCCGCATGCAAGGATACCTTGCGGACCTGGCCGGTG
GTGGAACAAGCGATACCGTGGGGCGTGGGAGCGACTACACTGGTCGTTGC
TGCTCAAAAGAGACTATTGCCGCGCTCCCGGATGCCTCTCAACCCGTGGA
GGGAGCTGTTGGAGAAGTTGACGGCGGTGATGTTCGGGGGTGCGTGATCT
GCCTGTCAGAGAATGACACGGCGGGGCAGCACCTCTGTCGCCTCCCCTGC
AACCACGTCTTCCACAGGGTCTGTGTTGGGAAATGGCTCTCGATGCAGGA
TTCGTGTCCGACCTGTAGGAGGCAAGTGCCGAACGTCGAAATTGGCTCCA
CTCTCGCAACTACGGCGCCCCCCCATGAAGTGGCGTGAACTTTTACGTTA
GCGATGTGTGTCTCTCTGTGAACGGTATGCCCAAAGGACTGCAAGTTGAG
GCGATTTTGTTTTGGGCGTCTTCGCGGGCATTGGCATGTGTTAACCTGTC
TGCGTGTGTAATTGTACATCCTTGTTTGCATATCTCAACTCAAGTGTGCT
CGCGTCTGTGCTCGCGTCTGTGTTTGTACTTTACTGTGTACGTGCTTTGC
TATTCTGTATGTTGTACCTGGTAGAATTGGTGAGCTGTCCTGCATAGCTT
CCGTCGGAATTACGACCTTTGTGTAGATCATGTGCATGTGTGCATATGCA
TACGCGTACCTGTTTCGGGTGTTCGACGCTCTCCCCACCCCATGGAGGCC
CACATCCACCTGATCTTTCAGTTCACTGGTGTTGACCGCGCTACTT

Coding sequence (CDS) from alignment at Scaffold_38:323466..326261+

>EsuBft123_11a-0001 ID=EsuBft123_11a-0001|Name=EsuBft123_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2388bp|location=Sequence derived from alignment at Scaffold_38:323466..326261+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCAACCCGTCCCGTGGTGCCCACCGCACGTGGGCTAGAACTACA
GAGCTTGATTCCTCGCACGCTGTCCGCGCGGGCGTCAACCTCGTCGCTGT
TCACACCTCTTCCTGGGGCTGGTTTAGCCGACACGCCTCGCTCTCGGTCT
CCGCCTTCGTCGCAGCAGCAGCAACAACAGCCACAACAGGACCGGCAGAA
TCATCCCACGGCCTACCCGCTTAGAGTCCCGAATCGCCACGGAAGGTCGG
ACGGCGGTCGAGCTAGTATACGCCGTTTGGCCGGGGGCGGTAGAGATGCA
TGGAGGACAGCACCGGTGGCGTACAGCGCGGTCGTGAGGGGGACGGGGCG
GGATACCACGGCGCTGAGGGCAGTGTCGGCACGACTTGACGCGGCCTCAA
CCGCAATAGATGCCGTAGAGATAGGTGTGAGATCGGCATCGGATAGCCTG
GATTCTCTCCTACAGCTGTTGGAATCCCGGCATGGACCAGCGGTGTCGCA
AACGTCGCTTTCATCGACCAGTGCTGAGGTGGATGCGTTCGAGAATGGAT
CTGCTGACCCTGGTCCTTCTTCCCGAGGAATAGGAGAAGGAGGGCGAGCA
GCAGCATCATCTGACTCGCAAGCATCCGCTGGTGCAATGTCTATGCGTTC
ACCGAGGAGTTCAGTTTCACCGCCGGCTGTGTCTCTTCCTACTTCTTCTG
GGTTGATGGTAGGGGCTTCGTCAAGTGAATCACCACGGGACGAGTTCAAT
GTTTCAACCCCACCGCCGCAGCCGATGGGACCTCCACGGTACGCCAACAG
AGACGGTGCACCCATCGTTGCCCGTGTGCCAGAAGGTGGTGGAGGGTCGC
GTGCGGCCATTATGCTGAGAAGGGAACAACAAGCAGGTTTGACTGCATTC
AGCAACCCAGAGGCTGGGGAACATCTTTGTCGGTCGCCTGCTGTCCTGCC
GAGGCAAGATGGTGGAGCACAAGAAGGTTCTGTCGCCACTGGAGACACTT
CAATTGACGAGACGAACGAAGAGCATAGCACGCGGACGAGGTCAGGTCAA
CATTTGACCTCTGCACTTGCGCTACCGCGCCCGGTGTCCTCGCCAGCAGT
ACAGGAACTTGTTGAGGAGGTCAATAGTAGTAGGAGGACGGCGGAGCGAG
AAACAAGCGAAAGCCATGGTGTCGGAATGGCGGGATCGGCTACCGCGGGA
CAACACCTTCCCGCAGACATCGGCATTGGTGGGACCATGGAAGCAGCACC
TACTGACCTCGCTGCCTTGAGAATGCTCGGCAGTGATAGGACTACGTCTC
TGAACAGTGTGCCGCGCTCGGTTCGAGAAGCTGGAAGCAGACGGGCGTCT
CCGCGCGGGATGGAAGGAACGGGCAGCGGTGCCGCCTCGTCAACACGTGA
GACATACGCCGGCGAAACCTCCGGCCGCGGCAACGTGGCTCTCCCGGTCC
GGGAGCTGAACGGCATCGACACCGAGCGCGGGAGGCTGATTTTGGAGATC
GCTCGCCTCCGTGGGCAACAGAATCAATCTCTAGTCCACCTCCATCGCCT
CCAACACGAGCAGTTTGTCGTGCGCCAGCGGCAGGTGTCCACCCTATCCG
ACATTGTCAACAGCTTTGGTCGAACCGTGGCGGCGGCGGCCGCGCTCCCT
CACGGGGAGGACTCTTCTCTGGGGCGCATCAGCAGCGACGTTGTGTCCAC
GCTGCGGCGGATGCTCCGTCTCTTGTCTGCGACGGTCCCCGCTGCGACTG
CCGCACAGTTAGCCCCGGGCAATTCTCCCGTGCTGACGACGACGTCTTCC
GTATCCGATGGCACCCCGCCCCCCGCGCCTAACACACCACGTCCCACCGC
TGTACGAGAAGGACAGGTAGCCAGCGGCTCCGCCGGCACTTACTCCGTGG
GAGGGCGGGTGGCGCTACGGCCCGCCGGAGTGGACCTCACGCAAGAGGTG
ATCGATGCCGCTCTCCAGGCGCTTCCCAGATTGGCGGCCGCGGCGACAGC
GATATCGGGTGCAAGCCGCATGCAAGGATACCTTGCGGACCTGGCCGGTG
GTGGAACAAGCGATACCGTGGGGCGTGGGAGCGACTACACTGGTCGTTGC
TGCTCAAAAGAGACTATTGCCGCGCTCCCGGATGCCTCTCAACCCGTGGA
GGGAGCTGTTGGAGAAGTTGACGGCGGTGATGTTCGGGGGTGCGTGATCT
GCCTGTCAGAGAATGACACGGCGGGGCAGCACCTCTGTCGCCTCCCCTGC
AACCACGTCTTCCACAGGGTCTGTGTTGGGAAATGGCTCTCGATGCAGGA
TTCGTGTCCGACCTGTAGGAGGCAAGTGCCGAACGTCGAAATTGGCTCCA
CTCTCGCAACTACGGCGCCCCCCCATGAAGTGGCGTGA