EsuBft1238_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1238_6a-0001
Unique NameEsuBft1238_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:326605..327802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8K5
ProteomeIdEsuBft1238_6
Ownerapollo_admin@sb-roscoff.fr
Notedna-binding protein smubp-2 os:homo sapiens gn:ighmbp2 pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length369
Hectar predicted targeting categoryother localisation
Evalue9.17e-68
EggNOG OGsCOG1112@1|root,KOG1803@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EC3.6.4.12,3.6.4.13
DescriptionATP-dependent 5'-3' RNA helicase activity
COG categoryL
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0032991
GO0000166
GO0003677
GO0006259
GO0003723
GO0003678
GO0003824
GO0008026
GO0005737
GO0097458
GO0043167
GO0008152
GO0008186
GO0044710
GO0042995
GO0008094
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_6aEsuBft1238_6aEctocarpus subulatus male Bft15bgeneScaffold_510 326605..327802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_6a-0001-exonagat-exon-78967Ectocarpus subulatus male Bft15bexonScaffold_510 326605..326754 +
EsuBft1238_6a-0001-exonagat-exon-78968Ectocarpus subulatus male Bft15bexonScaffold_510 327339..327543 +
EsuBft1238_6a-0001-exonEsuBft1238_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 327789..327802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_6a-0001-cdsEsuBft1238_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 326605..326754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1238_6a-0001EsuBft1238_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 326605..327802 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1238_6a-0001 ID=EsuBft1238_6a-0001|Name=EsuBft1238_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=369bp|location=Sequence derived from alignment at Scaffold_510:326605..327802+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAACAATGACACAGACAGCACGGCCCGGGGCACAGGTCCCGTGTC
CATAAACGAATGGGCCCGGGTGCAGCGGAAGCTGCTGAGGCTTGAACGAG
ACGAGGAAGTCGAGCAAGTCGCCGGAATGCTGAACCAACTAACGGCACAG
GAATGCATGGAGCGCGGTGTCAGCCTCGTTCCTCTCGCGGTGACGGGGCT
GTCGACGGGTTTGTACGGAAGGGCGTGCGTCTCCGTCGGGGATCCCAAGG
GCCGGCCCCTGCCCGCGCACAGGCTGGGCGCCGGCGATCAGGTCCGCCTG
TACAGCTCTAAGGGGGGCAAGGGCGACATCGGGGGAGGGATATCTGAGAT
ATCGGGTGTAAACCGGTGA
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protein sequence of EsuBft1238_6a-0001

>EsuBft1238_6 ID=EsuBft1238_6|Name=EsuBft1238_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MSNNDTDSTARGTGPVSINEWARVQRKLLRLERDEEVEQVAGMLNQLTAQ
ECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRL
YSSKGGKGDIGGGISEISGVNR
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mRNA from alignment at Scaffold_510:326605..327802+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1238_6a-0001 ID=EsuBft1238_6a-0001|Name=EsuBft1238_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1198bp|location=Sequence derived from alignment at Scaffold_510:326605..327802+ (Ectocarpus subulatus male Bft15b)
ATGAGTAACAATGACACAGACAGCACGGCCCGGGGCACAGGTCCCGTGTC
CATAAACGAATGGGCCCGGGTGCAGCGGAAGCTGCTGAGGCTTGAACGAG
ACGAGGAAGTCGAGCAAGTCGCCGGAATGCTGAACCAACTAACGGCACAG
GTGGGACCTCCCCTCGACGGCAGCTGCTGCCCCGCCCCCTTTTAGCAGAG
CAAGGGGCTTCGGCTCGCTGTGTGCAGCGGTATTTGCCCGCAGAAAGGCA
CTTTTTCTGAAGCTGTTATTGCTGTCGTCAGCCGGGTGTTGGGCGTGGCT
TTCGCGAAACACGCAGAACCCTAGACTACTTCAGTGCAAAGAACTCTGCG
TTATTTGGTGTGTCTTCATCCCTTGACGCCTTCGCTTCCAATATAACCAG
TCCCCGCTTTTGTGTCTACAGCAGTATCTACTGGGCTCCAAGAAAGTGCG
GCAGCAATGGCATTGCGGCGGACAGCAGGTTCCCCTTTGTCCGTGTGCAT
AACAGGGGAACGCCCACGGCAGGCACACTAACTTGACACACCAGTGGTTG
AGGAGATGATAGATGATGTTGTTCATGTGTGGGTAGAGGCGCCGGGCGGA
GCGCCTAAAACCGCACATCGTCGATGGGCAACTGCAGTGTTTTCTCCGGA
CCAAACACATCAACGTATTAAGCCACAGTCGTCGTCGACCGGGCATGATT
GCCTCAAACGCTTCAAAACACGCACACCACGTAGGAATGCATGGAGCGCG
GTGTCAGCCTCGTTCCTCTCGCGGTGACGGGGCTGTCGACGGGTTTGTAC
GGAAGGGCGTGCGTCTCCGTCGGGGATCCCAAGGGCCGGCCCCTGCCCGC
GCACAGGCTGGGCGCCGGCGATCAGGTCCGCCTGTACAGCTCTAAGGGGG
GCAAGGGCGACATCGGGGGAGGGATATCTGAGATATCGGGTGAGCAAACG
GCTCCATCCTGCTTGTTGTCGCCATCATTTAGTTGTTCCACACTGCGTAT
GGCCCGTTCATGTTCAGTCACCTCTTCGACCAGGAGCGTTTCTCAAGCCT
GTTTTACCGCGCATGTGGGAGCGACTCCGGTGCGAGAAAACAAAGTGTTG
GTCGGTCCGTACAAAAATCGTATTTAGTTTCGTACGAAGCGCGCGACGCT
CCATGTTGCTGCCGTGTTTATGTGCGTGTAGTAGGTGTAAACCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_510:326605..327802+

>EsuBft1238_6a-0001 ID=EsuBft1238_6a-0001|Name=EsuBft1238_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_510:326605..327802+ (Ectocarpus subulatus male Bft15b)
ATGAGTAACAATGACACAGACAGCACGGCCCGGGGCACAGGTCCCGTGTC
CATAAACGAATGGGCCCGGGTGCAGCGGAAGCTGCTGAGGCTTGAACGAG
ACGAGGAAGTCGAGCAAGTCGCCGGAATGCTGAACCAACTAACGGCACAG
GAATGCATGGAGCGCGGTGTCAGCCTCGTTCCTCTCGCGGTGACGGGGCT
GTCGACGGGTTTGTACGGAAGGGCGTGCGTCTCCGTCGGGGATCCCAAGG
GCCGGCCCCTGCCCGCGCACAGGCTGGGCGCCGGCGATCAGGTCCGCCTG
TACAGCTCTAAGGGGGGCAAGGGCGACATCGGGGGAGGGATATCTGAGAT
ATCGGGTGTAAACCGGTGA
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