EsuBft1238_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1238_3a-0001
Unique Name	EsuBft1238_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_510	contig	Scaffold_510:292515..295050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G8K0
ProteomeId	EsuBft1238_3
Protein domains	SSF52047
Protein domains	G3DSA
Protein domains	PTHR22710
Protein domains	IPR001611
Owner	apollo_admin@sb-roscoff.fr
Note	x-ray radiation resistance-associated protein 1 os:mus musculus gn:xrra1 pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	1920
Hectar predicted targeting category	other localisation
Evalue	0.0
EggNOG OGs	COG4886@1\|root,KOG0619@2759\|Eukaryota
Ec32 ortholog description	Hypothetical leucine rich repeat protein
Ec32 ortholog	Ec-14_003290.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K08460
Description	regulation of response to stimulus
COG category	U
BRITE	ko00000,ko04030

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0050896
GO	0048513
GO	0044464
GO	0008152
GO	0050794
GO	0003333

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1238_3a	EsuBft1238_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_510 292515..295050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1238_3a-0001-exon	agat-exon-78951	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 292515..293141 +
EsuBft1238_3a-0001-exon	EsuBft1238_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 293291..293565 +
EsuBft1238_3a-0001-exon	agat-exon-78949	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 293753..294623 +
EsuBft1238_3a-0001-exon	agat-exon-78950	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 294904..295050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1238_3a-0001-cds	EsuBft1238_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_510 292515..293141 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1238_3a-0001	EsuBft1238_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_510 292515..295050 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_510:292515..295050+
coding sequence from alignment at Scaffold_510:292515..295050+

spliced messenger RNA

>EsuBft1238_3a-0001 ID=EsuBft1238_3a-0001|Name=EsuBft1238_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1920bp|location=Sequence derived from alignment at Scaffold_510:292515..295050+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGAAGCCATGGCGATGACGACGACAACGAGAGCAGGCTCGGAGA
GGAAAGACGGCGCGAGGTCGAAGTCACTAAGAAGCGCCGACGATTCCTCG
TGGAGGAGCGAAGGCGGACGCGGCCCAAGCAGCTCGACGGCTTTATGCTG
ATGGACGCATGCGGGTGCGACCTCCCTGACGAGGGCCGCAGGGCCGACGT
GAGCGGCAGAGGCCTCGTAAGCGTGGTCAGGGAGGACATGTCCTTCTTCG
TCCGCTTGCAGGCCGTTGACGCTGGAGACAACAGCCTTCCCTTTGACAGC
TTCCTGGACCTACCACGGCTGGAGGAGCTTCGCCTCCCCTGCAACAGCAT
CCGCGACATCGACGGACGGAAGATCCTTGCGCAGCTGCAGCTCGGCGGGG
GCGACGGCAACAACGGCAACGGCTACGGCCAGCTGCGACGTCTAGACCTC
TCTTACAATAGTTTGTCGGGTGGTGCCCTGTCGGTGCTGACGCACCTCCC
GAGCTTGACCGACCTGGACCTCACATGCAACGGCCTCGTCGATCTTCCCG
TGGCCATGGCTCGCTTTCCGGTTCTCCAGAAGCTATCGCTGGAACGTAAT
CAACTCGAGAGCGACGCAGTGTTTGATGTGCTTTCTAGGCTCCCAGGCTT
GCGAGAGCTCAATCTCGCCTTCAACTACTTCACGGGCATCAACCTCGGCC
CAGAGATAGCAGAACAAGCGTTCCCTCTTCTAGAGGCGCTCGATCTCGGG
TTTAACTTTATCGGCAGCGAGAGCGACGTGGTCGTGGTGGTGCTTTTCGA
ACGGTTGCAGAGGCTGATTCTGTACGGGAACCCACTGGCGGGGCCCACGG
GAGAAGACTCGCTTGGGCTCTGCGTCGAAAAGCTTGTTGCCGAGTCAGAC
AGAATCCGGGGAGACTACGCGAGTTATCCTATAGAGGTCATCACAGAGCT
TCCCAGAATAAGACAGACCCGAGGCGGGGCGGGAGGGGGTGGGGGTGCGG
GGCGTCGGCGGCGCCCGTACGGCGACACGGGTGTCACGATGGTCGACGAG
GGCTGCTTGCCGCCGGCAAGCACGTTCCGCGACGCCGGGAACAGGACACT
CTTTAGGTTCGAACGGAAGCCAAGCGGCAGGAGCGGTGACGGCGACGGGG
CCGACGACAACATTGTGGAGGCGACGCTGCGCTTGGCCAGGGAGAGCAAG
AACCGGGCGGCCTTGGCCGGTAGCAGGTCCGCGGCAACGGTGGCGGCCAT
AGGGGTGCAGGATTGCACGTTCTTGACCAGCGTAGAGCGGCCACAAGAAG
ACAACCACGACGATGGACTTGCTGCCAATGGCGGTGCCACGGATGAAAGA
GAAAATGCAGCTAGTGAGGACGTTGGCAGATTGCTAGGCCAAGAAGCAGG
TGCCGGGAATGGAATGTCTACTCGCTTGTTGCGGGGACCGATCGATCCTA
TGGTCCGCAGGGACCCCGTCAAGCTGCGGATGGCGCTGACGGCCCTCCGG
TACACGCTGAAGCACCCGGTCACGTCTTCGTTAGACGTTCAATGGCAGAA
GCAGCAGCAGCAACAACAACAACAGCAGCAGCTCACGCGCGGCAAGGATT
GCGGGGCGGGCCGAAAAACGGCCGCCGCTCGCGCGAGACAGCTACCGCGC
CGTCCGTATCGGCTCCTCAAGTCATCGCACCAAGTGGGCTTCTGCGCTAG
ACTGTTGGACGAACCGACGAAAGGTGGTTGTGGAGGCAGCGGGGGTGACG
GCGTATTGGGCAGGGTGGACGAGGTGTTGACATCAATGGGCGCGGGTATG
GACAGGATGGTGCTCGAGAAGCGAGCGAGGGAGAACAACAACGGTACCCA
GGCGTCCAAGCCCGAACTGTCGGCGATCATCCGAACGGTTAATGAAGTGT
TGGACGAGACGGAGTACTAA

protein sequence of EsuBft1238_3a-0001

>EsuBft1238_3 ID=EsuBft1238_3|Name=EsuBft1238_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=639bp
MTRSHGDDDDNESRLGEERRREVEVTKKRRRFLVEERRRTRPKQLDGFML
MDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDS
FLDLPRLEELRLPCNSIRDIDGRKILAQLQLGGGDGNNGNGYGQLRRLDL
SYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERN
QLESDAVFDVLSRLPGLRELNLAFNYFTGINLGPEIAEQAFPLLEALDLG
FNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESD
RIRGDYASYPIEVITELPRIRQTRGGAGGGGGAGRRRRPYGDTGVTMVDE
GCLPPASTFRDAGNRTLFRFERKPSGRSGDGDGADDNIVEATLRLARESK
NRAALAGSRSAATVAAIGVQDCTFLTSVERPQEDNHDDGLAANGGATDER
ENAASEDVGRLLGQEAGAGNGMSTRLLRGPIDPMVRRDPVKLRMALTALR
YTLKHPVTSSLDVQWQKQQQQQQQQQQLTRGKDCGAGRKTAAARARQLPR
RPYRLLKSSHQVGFCARLLDEPTKGGCGGSGGDGVLGRVDEVLTSMGAGM
DRMVLEKRARENNNGTQASKPELSAIIRTVNEVLDETEY

mRNA from alignment at Scaffold_510:292515..295050+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1238_3a-0001 ID=EsuBft1238_3a-0001|Name=EsuBft1238_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2536bp|location=Sequence derived from alignment at Scaffold_510:292515..295050+ (Ectocarpus subulatus male Bft15b)
ATGACCAGAAGCCATGGCGATGACGACGACAACGAGAGCAGGCTCGGAGA
GGAAAGACGGCGCGAGGTCGAAGTCACTAAGAAGCGCCGACGATTCCTCG
TGGAGGAGCGAAGGCGGACGCGGCCCAAGCAGCTCGACGGCTTTATGCTG
ATGGACGCATGCGGGTGCGACCTCCCTGACGAGGGCCGCAGGGCCGACGT
GAGCGGCAGAGGCCTCGTAAGCGTGGTCAGGGAGGACATGTCCTTCTTCG
TCCGCTTGCAGGCCGTTGACGCTGGAGACAACAGCCTTCCCTTTGACAGC
TTCCTGGACCTACCACGGCTGGAGGAGCTTCGCCTCCCCTGCAACAGCAT
CCGCGACATCGACGGACGGAAGATCCTTGCGCAGCTGCAGCTCGGCGGGG
GCGACGGCAACAACGGCAACGGCTACGGCCAGCTGCGACGTCTAGACCTC
TCTTACAATAGTTTGTCGGGTGGTGCCCTGTCGGTGCTGACGCACCTCCC
GAGCTTGACCGACCTGGACCTCACATGCAACGGCCTCGTCGATCTTCCCG
TGGCCATGGCTCGCTTTCCGGTTCTCCAGAAGCTATCGCTGGAACGTAAT
CAACTCGAGAGCGACGCAGTGTTTGATGTAAGCTGAGCGCGGCTGTGGCG
ACGAGCTCGTTGCGTAACTTGTTTTTCACGCGCTCCGTTTGTCGACGTGG
GCACTAGGTGGTAAATCATCGACGTCTTCCGTGCCATGCCAACCAATGCC
TAACCCTCGTCGCGTCCCGATCGTAGGTGCTTTCTAGGCTCCCAGGCTTG
CGAGAGCTCAATCTCGCCTTCAACTACTTCACGGGCATCAACCTCGGCCC
AGAGATAGCAGAACAAGCGTTCCCTCTTCTAGAGGCGCTCGATCTCGGGT
TTAACTTTATCGGCAGCGAGAGCGACGTGGTCGTGGTGGTGCTTTTCGAA
CGGTTGCAGAGGCTGATTCTGTACGGGAACCCACTGGCGGGGCCCACGGG
AGAAGACTCGCTTGGGCTCTGCGTCGAAAAGCTTGTTGCCGAGTCAGACA
GGTATGTTCGGCCGTTCAGCTTTATGCCTGGGAAAAGTTATGGTTGAAGC
CGCTGTTGTCGTCGACGCCGCCATTGGTTAGTTGGGCTGTTTGACGAAAC
ACTCCTTCATTGCCGACCCTCCTCTCCGGCAACTGCCCGTCTGTGCGTCG
CGTCTGCCGCGTTCGTGCGTTGCGTTACACAACGAAAGAATCCGGGGAGA
CTACGCGAGTTATCCTATAGAGGTCATCACAGAGCTTCCCAGAATAAGAC
AGACCCGAGGCGGGGCGGGAGGGGGTGGGGGTGCGGGGCGTCGGCGGCGC
CCGTACGGCGACACGGGTGTCACGATGGTCGACGAGGGCTGCTTGCCGCC
GGCAAGCACGTTCCGCGACGCCGGGAACAGGACACTCTTTAGGTTCGAAC
GGAAGCCAAGCGGCAGGAGCGGTGACGGCGACGGGGCCGACGACAACATT
GTGGAGGCGACGCTGCGCTTGGCCAGGGAGAGCAAGAACCGGGCGGCCTT
GGCCGGTAGCAGGTCCGCGGCAACGGTGGCGGCCATAGGGGTGCAGGATT
GCACGTTCTTGACCAGCGTAGAGCGGCCACAAGAAGACAACCACGACGAT
GGACTTGCTGCCAATGGCGGTGCCACGGATGAAAGAGAAAATGCAGCTAG
TGAGGACGTTGGCAGATTGCTAGGCCAAGAAGCAGGTGCCGGGAATGGAA
TGTCTACTCGCTTGTTGCGGGGACCGATCGATCCTATGGTCCGCAGGGAC
CCCGTCAAGCTGCGGATGGCGCTGACGGCCCTCCGGTACACGCTGAAGCA
CCCGGTCACGTCTTCGTTAGACGTTCAATGGCAGAAGCAGCAGCAGCAAC
AACAACAACAGCAGCAGCTCACGCGCGGCAAGGATTGCGGGGCGGGCCGA
AAAACGGCCGCCGCTCGCGCGAGACAGCTACCGCGCCGTCCGTATCGGCT
CCTCAAGTCATCGCACCAAGTGGGCTTCTGCGCTAGACTGTTGGACGAAC
CGACGAAAGGTGGTTGTGGAGGCAGCGGGGGTGACGGCGTATTGGGCAGG
GTGGACGAGGTAAGCAGCGGTGTCGTTCTGCGACTGGGTGCATCAAGCTT
CCACTAGGTTCCCTGCCTCAACGAGAACCATCATGCCTCATATTGCCAAG
CGGCCGCTATATCTATCTACGCTCGCCTACAACTGAATGTTTCCATTGGT
GTGTTCGCGTGCTACACGAAACCAGGTTGAACTCGCGAGCAATTCCTAGC
TCAGTCGAGTAACCCCACGTACCAGAACCAGCATTCTCACGAAACGTACG
CCCCCTCTGCCCCCCTCTATCGTTGACGTGTGACGTCAGGTGTTGACATC
AATGGGCGCGGGTATGGACAGGATGGTGCTCGAGAAGCGAGCGAGGGAGA
ACAACAACGGTACCCAGGCGTCCAAGCCCGAACTGTCGGCGATCATCCGA
ACGGTTAATGAAGTGTTGGACGAGACGGAGTACTAA

Coding sequence (CDS) from alignment at Scaffold_510:292515..295050+

>EsuBft1238_3a-0001 ID=EsuBft1238_3a-0001|Name=EsuBft1238_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1920bp|location=Sequence derived from alignment at Scaffold_510:292515..295050+ (Ectocarpus subulatus male Bft15b)
ATGACCAGAAGCCATGGCGATGACGACGACAACGAGAGCAGGCTCGGAGA
GGAAAGACGGCGCGAGGTCGAAGTCACTAAGAAGCGCCGACGATTCCTCG
TGGAGGAGCGAAGGCGGACGCGGCCCAAGCAGCTCGACGGCTTTATGCTG
ATGGACGCATGCGGGTGCGACCTCCCTGACGAGGGCCGCAGGGCCGACGT
GAGCGGCAGAGGCCTCGTAAGCGTGGTCAGGGAGGACATGTCCTTCTTCG
TCCGCTTGCAGGCCGTTGACGCTGGAGACAACAGCCTTCCCTTTGACAGC
TTCCTGGACCTACCACGGCTGGAGGAGCTTCGCCTCCCCTGCAACAGCAT
CCGCGACATCGACGGACGGAAGATCCTTGCGCAGCTGCAGCTCGGCGGGG
GCGACGGCAACAACGGCAACGGCTACGGCCAGCTGCGACGTCTAGACCTC
TCTTACAATAGTTTGTCGGGTGGTGCCCTGTCGGTGCTGACGCACCTCCC
GAGCTTGACCGACCTGGACCTCACATGCAACGGCCTCGTCGATCTTCCCG
TGGCCATGGCTCGCTTTCCGGTTCTCCAGAAGCTATCGCTGGAACGTAAT
CAACTCGAGAGCGACGCAGTGTTTGATGTGCTTTCTAGGCTCCCAGGCTT
GCGAGAGCTCAATCTCGCCTTCAACTACTTCACGGGCATCAACCTCGGCC
CAGAGATAGCAGAACAAGCGTTCCCTCTTCTAGAGGCGCTCGATCTCGGG
TTTAACTTTATCGGCAGCGAGAGCGACGTGGTCGTGGTGGTGCTTTTCGA
ACGGTTGCAGAGGCTGATTCTGTACGGGAACCCACTGGCGGGGCCCACGG
GAGAAGACTCGCTTGGGCTCTGCGTCGAAAAGCTTGTTGCCGAGTCAGAC
AGAATCCGGGGAGACTACGCGAGTTATCCTATAGAGGTCATCACAGAGCT
TCCCAGAATAAGACAGACCCGAGGCGGGGCGGGAGGGGGTGGGGGTGCGG
GGCGTCGGCGGCGCCCGTACGGCGACACGGGTGTCACGATGGTCGACGAG
GGCTGCTTGCCGCCGGCAAGCACGTTCCGCGACGCCGGGAACAGGACACT
CTTTAGGTTCGAACGGAAGCCAAGCGGCAGGAGCGGTGACGGCGACGGGG
CCGACGACAACATTGTGGAGGCGACGCTGCGCTTGGCCAGGGAGAGCAAG
AACCGGGCGGCCTTGGCCGGTAGCAGGTCCGCGGCAACGGTGGCGGCCAT
AGGGGTGCAGGATTGCACGTTCTTGACCAGCGTAGAGCGGCCACAAGAAG
ACAACCACGACGATGGACTTGCTGCCAATGGCGGTGCCACGGATGAAAGA
GAAAATGCAGCTAGTGAGGACGTTGGCAGATTGCTAGGCCAAGAAGCAGG
TGCCGGGAATGGAATGTCTACTCGCTTGTTGCGGGGACCGATCGATCCTA
TGGTCCGCAGGGACCCCGTCAAGCTGCGGATGGCGCTGACGGCCCTCCGG
TACACGCTGAAGCACCCGGTCACGTCTTCGTTAGACGTTCAATGGCAGAA
GCAGCAGCAGCAACAACAACAACAGCAGCAGCTCACGCGCGGCAAGGATT
GCGGGGCGGGCCGAAAAACGGCCGCCGCTCGCGCGAGACAGCTACCGCGC
CGTCCGTATCGGCTCCTCAAGTCATCGCACCAAGTGGGCTTCTGCGCTAG
ACTGTTGGACGAACCGACGAAAGGTGGTTGTGGAGGCAGCGGGGGTGACG
GCGTATTGGGCAGGGTGGACGAGGTGTTGACATCAATGGGCGCGGGTATG
GACAGGATGGTGCTCGAGAAGCGAGCGAGGGAGAACAACAACGGTACCCA
GGCGTCCAAGCCCGAACTGTCGGCGATCATCCGAACGGTTAATGAAGTGT
TGGACGAGACGGAGTACTAA