EsuBft1232_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1232_4a-0001
Unique Name	EsuBft1232_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:425843..427354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1232_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	135
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a	EsuBft1232_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 425843..427354 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a-0001	EsuBft1232_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 425868..426125 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a-0001-exon	EsuBft1232_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 425843..427114 +
EsuBft1232_4a-0001-exon	agat-exon-44429	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 427268..427354 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a-0001-exon	agat-five_prime_utr-1461	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 425843..425867 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a-0001-cds	EsuBft1232_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 425868..426125 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1232_4a-0001-exon	agat-three_prime_utr-2209	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 426126..427114 +
EsuBft1232_4a-0001-exon	agat-three_prime_utr-2210	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 427268..427354 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:425843..427354+
coding sequence from alignment at Scaffold_499:425843..427354+

spliced messenger RNA

>EsuBft1232_4a-0001 ID=EsuBft1232_4a-0001|Name=EsuBft1232_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1359bp|location=Sequence derived from alignment at Scaffold_499:425843..427354+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCGCCCGTGTGGAGTCAGTCGATGGCACGTGCGGCGGTTGTTTTAT
GCCCGACTCAAACCTACCAGTCTCTCTCGCGTAACATCTGTGGGGCATGT
CTCCCATCAACTTCCTCCTTCGGCTTCCTTGCGTATCAACACCGGAGTAC
TCGCCGTACTCTCTACTGCGTCTTTGTCAGCAGTGATGTGGAGACGGGCG
TCACCGGCCACATACCGTCCGCAACATGCTCCATGCACCAAACTCTTGCC
AGGGGTCATCCTTTTTCTCATCTCTCGATATAGTTCACAGTCTCCCAACT
ATGTCCTCTCCTTTGCGCTGCCACATGGGCAAACCTGCATGCCCTCTCAT
CCTCCGGTCATACTACTGGTGCATCTCATCGTTCTTTCTGGCAAGTCTTG
CCCCCGCTACTCTAGCTTGCAATTCAAGCCTTTTCACGGCGTCCATCTGG
CCCTTTAAATAAGCTTCCATCACTGTTTCTTCTTTCAGTCCCCCGTAAAT
CTCTAGGCGGTGCTCACTTTTCAATTACTTCGATCCGTAATTCTTGTACC
CCCCGAACTCTTCCTTACTTTTTTGTCCCCTCCTATCTTGTTCCGTTGTC
TCTCCATTTTTTGAACCACGTTATCCCCAGATATTACCGATCTCCCATTC
TTGCGGCATTCTTCTCCTTATACATTACCGTTTGAGCTTCTTCGCGCCTT
CTGTTCTACGTGAGTGCAGTCCTGCTCTACTGTAAACGTCGTGCCAATAA
TCATCACCGGCACGGTATCACTAACTTTGAAACCCCATCCATCAGGAAGT
CGTTTTGCCCATGTCTCAAACTCGCTGAAAATTGCTTACAGTTTCTGGCT
GCACCTCGCCTTCAGACTGCTCAAGCATCCCTTCCCCCTCCATTTTCCGG
TTACGTTGGATACTGTTCGTGATGATGATGCGCCTCCAACACCGTCACCG
CCATCAGCTTTGTCACGAGTCCGATCAGCAAACCCGCTGTGAGACGCAGC
AACAGGAGGGGGGCTACCGTCGCCCACTGAGCCACGCCGAACCGCGGTGA
CAGGGAGCGAGAATGGCGCGCATCCGTCAATTGCGTCGCCTTCCTGGGTG
CCCCTCGGGGAAACCATAGGTTTCGCGCTCGCCTTGCCAGAAACCACGGT
AGCTTCCCTTTGCGACCTACCATCGACCCCTGAGCCACGCCGAACCTCGG
TGACAGGGAGCGAGAACGGCGCGTATCCGTCAATTGCGTCGACTTCCTGG
GTGCCCCTCGGGGAAGCCGTAGGTTTCGCGCTCGCCTTGCCAGACACCAC
GGTAGCTCCCCTTTGCAAACTACCCACCGCAAGGCCCCTCAGGGTCCCTT
TACCCCCAG

protein sequence of EsuBft1232_4a-0001

>EsuBft1232_4 ID=EsuBft1232_4|Name=EsuBft1232_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MARAAVVLCPTQTYQSLSRNICGACLPSTSSFGFLAYQHRSTRRTLYCVF
VSSDVETGVTGHIPSATCSMHQTLARGHPFSHLSI

mRNA from alignment at Scaffold_499:425843..427354+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1232_4a-0001 ID=EsuBft1232_4a-0001|Name=EsuBft1232_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1512bp|location=Sequence derived from alignment at Scaffold_499:425843..427354+ (Ectocarpus subulatus male Bft15b)
TTGGCCGCCCGTGTGGAGTCAGTCGATGGCACGTGCGGCGGTTGTTTTAT
GCCCGACTCAAACCTACCAGTCTCTCTCGCGTAACATCTGTGGGGCATGT
CTCCCATCAACTTCCTCCTTCGGCTTCCTTGCGTATCAACACCGGAGTAC
TCGCCGTACTCTCTACTGCGTCTTTGTCAGCAGTGATGTGGAGACGGGCG
TCACCGGCCACATACCGTCCGCAACATGCTCCATGCACCAAACTCTTGCC
AGGGGTCATCCTTTTTCTCATCTCTCGATATAGTTCACAGTCTCCCAACT
ATGTCCTCTCCTTTGCGCTGCCACATGGGCAAACCTGCATGCCCTCTCAT
CCTCCGGTCATACTACTGGTGCATCTCATCGTTCTTTCTGGCAAGTCTTG
CCCCCGCTACTCTAGCTTGCAATTCAAGCCTTTTCACGGCGTCCATCTGG
CCCTTTAAATAAGCTTCCATCACTGTTTCTTCTTTCAGTCCCCCGTAAAT
CTCTAGGCGGTGCTCACTTTTCAATTACTTCGATCCGTAATTCTTGTACC
CCCCGAACTCTTCCTTACTTTTTTGTCCCCTCCTATCTTGTTCCGTTGTC
TCTCCATTTTTTGAACCACGTTATCCCCAGATATTACCGATCTCCCATTC
TTGCGGCATTCTTCTCCTTATACATTACCGTTTGAGCTTCTTCGCGCCTT
CTGTTCTACGTGAGTGCAGTCCTGCTCTACTGTAAACGTCGTGCCAATAA
TCATCACCGGCACGGTATCACTAACTTTGAAACCCCATCCATCAGGAAGT
CGTTTTGCCCATGTCTCAAACTCGCTGAAAATTGCTTACAGTTTCTGGCT
GCACCTCGCCTTCAGACTGCTCAAGCATCCCTTCCCCCTCCATTTTCCGG
TTACGTTGGATACTGTTCGTGATGATGATGCGCCTCCAACACCGTCACCG
CCATCAGCTTTGTCACGAGTCCGATCAGCAAACCCGCTGTGAGACGCAGC
AACAGGAGGGGGGCTACCGTCGCCCACTGAGCCACGCCGAACCGCGGTGA
CAGGGAGCGAGAATGGCGCGCATCCGTCAATTGCGTCGCCTTCCTGGGTG
CCCCTCGGGGAAACCATAGGTTTCGCGCTCGCCTTGCCAGAAACCACGGT
AGCTTCCCTTTGCGACCTACCATCGACCCCTGAGCCACGCCGAACCTCGG
TGACAGGGAGCGAGAACGGCGCGTATCCGTCAATTGCGTCGACTTCCTGG
GTGCCCCTCGGGGAAGCCGTAGGTTTCGCGCTCGCCTTGCCAGACACCAC
GGTAGCTCCCCTTTGCGACCTACCATCGATCCCTGAGCCAGGCCGAACCG
CGGTGACAGGGAGCGAAAATGGCGGGCATCCTTCAATTGCGTCGACTTTC
TGGGTGCCCCTCGGGGAAGCCGTAGGTTTCGCGCTCGCCTTGCCAGACAC
CACGGTAGCTCCCCTTTGCAAACTACCCACCGCAAGGCCCCTCAGGGTCC
CTTTACCCCCAG

Coding sequence (CDS) from alignment at Scaffold_499:425843..427354+

>EsuBft1232_4a-0001 ID=EsuBft1232_4a-0001|Name=EsuBft1232_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_499:425843..427354+ (Ectocarpus subulatus male Bft15b)
ATGGCACGTGCGGCGGTTGTTTTATGCCCGACTCAAACCTACCAGTCTCT
CTCGCGTAACATCTGTGGGGCATGTCTCCCATCAACTTCCTCCTTCGGCT
TCCTTGCGTATCAACACCGGAGTACTCGCCGTACTCTCTACTGCGTCTTT
GTCAGCAGTGATGTGGAGACGGGCGTCACCGGCCACATACCGTCCGCAAC
ATGCTCCATGCACCAAACTCTTGCCAGGGGTCATCCTTTTTCTCATCTCT
CGATATAG